GBrowse Details

Vigan.11G252700.01

Basic Information:
Name: Vigan.11G252700.01
Multiple alignment
Variant Information
Position: Chr11:37507961..37510363 (+ strand)
Length: 2403
Functional Information:
Description: Similar to Uncharacterized protein. [I1J4J0, Glycine max]
GO: Molecular Function: heme binding (GO:0020037)
InterPro: Cytochrome b5-like heme/steroid binding domain (IPR001199)
Cytochrome b5, heme-binding site (IPR018506)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.49,8.49,2.83,27.94,6.56,7.09,5.99
Arabidopsis thaliana homolog: AT1G60660.1
Automatic updates:
Name: NM_001251021 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527821 (LOC100527821), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:37507961..37508275 (+ strand)
Length: 315
Type: five_prime_UTR
Position: Chr11:37508276..37508357 (+ strand)
Length: 82
Type: CDS
Position: Chr11:37508469..37508509 (+ strand)
Length: 41
Type: CDS
Position: Chr11:37508997..37509074 (+ strand)
Length: 78
Type: CDS
Position: Chr11:37509390..37509481 (+ strand)
Length: 92
Type: CDS
Position: Chr11:37509933..37509999 (+ strand)
Length: 67
Type: CDS
Position: Chr11:37510000..37510363 (+ strand)
Length: 364
Type: three_prime_UTR

>Vigan.11G252700.01 class=Sequence position=Chr11:37507961..37510363 (+ strand)
TTTTTTTCTG TGAGCTTGTG AGACTGTGTT ACTTTATTGT CTTCACTCGC AGCTTGTTCA TCATTGGTGA GTGCTGACAT
TAACATTTTT GCCTGCGTTT TGTTTTTTGT TCCTGTGCAA TGCTTTCAAC TTCTCATTGG TGAGTTCAGA TTGTGCCATG
ATTCTGTTTT TTTTGTTTCC CTCTCTCTCT TCTGAAAGTG CTTGTGAGTA TTTATGAACA CGAAGAGTGC CCAATATGTT
TGCATTATCG CATGCCCTTT TCTTGTTTTC GCCATTTCAG ATTGGATTAA GAGGCAAAGT TTCCGACTTT GAATTATGGT
ATTGCTGGTT GCACTTGCAT TGCTTCTGGG TCTCTTCCTC GCTGTTCTTC TTTTCAACCC ACGACACCGC AAATCTGGTT
CTGTTCATTA TTATGCTGTG ATCTATTATG TCACGCTGTG TGTTTTTGAA ATTTTGTACG CATGTGCTTA CTGTGTGTAT
TTACGATAAT TCTTTGCATC TATTTCAGGG CACAAGGGAA AAGCTCAAAC CAGTTTAAAC AATGATAAGG TATTTTACTT
ATTGGAGCTC GGTACTTTTT CTGGCATTTT GTTATGGGTT CTGCTGTGAA TTCTGCTCCT ATTTCTGTAG ATGATTGAGT
AGGATAATTA ATGAGCTTTG TTCAAGTAAC ATTTCGGATC TAGTTGAAAT TAAGATAAAT AAGTATTGTA ATGTCTTGGT
TTCGGTTACT CAAGCACTGG GTGAGGTGGG TTTCTTATGA TTTGTTGTCA TTGGGTGTTT TGCTCAATGC TCATATCATA
CTCTATAAGA AAGAAGGTTT GGGTTGATGA TGACGAAGAA TGCTCGCAAA ATATTCGTTT AAAGTTACTT TTATCTTTTC
GACTGGAAGT AAATGTAGCT ATTGCTGGGG CTCATACTAA CTAGTAAACA ATATTGGGAG GGTTGATTCA AACATAAAAT
TGTGTGTTGT TTAGTTGCGT AATGGTTTTT TTTATCTAAT TGGTATCACG CACTGTATTC TGTATTCTGC TTGTAGACAT
CAAAATCCTA CAGTAAAACG GAAGTTTCAT TGCATAACAA GAGAACAGAT TGTTGGATAA TCATCAAGAA AAAGGTATGA
GCTTTTTATT GATTTTCACT TTGGCACCTT ATGAATGTGC TACTCCTTTG GTTTAGAACC CAATAGTATT TCCATATCAA
ATCTTATGTT CTGAATTCAA TCCTATATAT TCTACATTAT CTGTTTTTGG TACAGTAGTG TTAATGGGGT TTGAAGTTTA
AACCTATAAC CTCATACAAA GTATCCAAAC CCGTCATTGC TAGCTCAATC CTAATGATTT AACTGAATTA GCTGATAATG
TTGTGATTGC CATTTTTACC TCTTGGACAG ATTCGTAGTT TGCATTTATT GGGTTTCTTC ACACTGTAGG TATATGATGT
TACCTCTTAT GTGGAAGAAC ATCCAGGTGG TGATGCCATT CTAGCACATG CTGGAGATGA TTCAACTGAA GGATTTTTTG
GGTATGCATT CATTCCTTTT CATGCATTGC TTATCTGTAA TGAAGATATT GCCTTAATTT ATCTATATTT ATTATTTGTT
TTCTTACTTC ACATTTCTTT TTGTATTTCA ATATTGAATA CAATATAGCA TTTCCTGTTT ATTTCATCAC ATTATTCTGT
TATACCAATA ATCTTGGTAA TCTCTGTTGA AGGTTACAAG AGACACTGCT TTTCACTGTT AATAAATTAA TAAACCATGC
TATATAAGTA GATTACAGCT ACAAACAAAA CATCATAGTT GTAACTTTTA TGTGTCAAAT TCAACATCAA CCCATTCCTC
ATCATCGAAA ATATGTACTT CACATGATTT TATCTTTGAC AGCTTTACCA CCTGTTGATC ATAAAAGGCT TCTGACATTT
TGTGATCAGT TTGCTGCTAC CAATTGTAAC TTTTTTTACA TTTTCTTTGC AGACCACAGC ATGCAACTCG AGTCTTTGAC
ATGATTGAAG ACTTCTACAT TGGAGATTTG GAACAATAGC CTAGTCAGTA ACTCTACAGT TTTAATGTTC AAGAGATGTA
TGATTTGAGA ATTTCAACAT TTTACTCCTT GTTATCTCCT CAAATTTTCA CTCCTTGTCT GATCATTCAT CTTCATTAGA
CAGTAATTCA GTTGTTGCTG TTGGAATGCA TGATTTTGAT ATAATTGGGC ATGAAATCAT TTGTATTCTC TGGCCTTTGT
GCGCGCAGTA ACAGCAAAAA CTGAGCCTTC CCCTTCTTTT CATCATTATT TTATCTTAGT TTCTTACCTT TAGCAATTTC
CTTTTCCCTG ATTTACATTA TTCATAGTTT ATTGATATAA ACAAATCTCA TCATACAAAA ATATTAAGCT AAATTAAAAT
ATT

>Vigan.11G252700.01
TTTTTTTCTG TGAGCTTGTG AGACTGTGTT ACTTTATTGT CTTCACTCGC AGCTTGTTCA TCATTGGTGA GTGCTGACAT
TAACATTTTT GCCTGCGTTT TGTTTTTTGT TCCTGTGCAA TGCTTTCAAC TTCTCATTGG TGAGTTCAGA TTGTGCCATG
ATTCTGTTTT TTTTGTTTCC CTCTCTCTCT TCTGAAAGTG CTTGTGAGTA TTTATGAACA CGAAGAGTGC CCAATATGTT
TGCATTATCG CATGCCCTTT TCTTGTTTTC GCCATTTCAG ATTGGATTAA GAGGCAAAGT TTCCGACTTT GAATTATGGT
ATTGCTGGTT GCACTTGCAT TGCTTCTGGG TCTCTTCCTC GCTGTTCTTC TTTTCAACCC ACGACACCGC AAATCTGGGC
ACAAGGGAAA AGCTCAAACC AGTTTAAACA ATGATAAGAC ATCAAAATCC TACAGTAAAA CGGAAGTTTC ATTGCATAAC
AAGAGAACAG ATTGTTGGAT AATCATCAAG AAAAAGGTAT ATGATGTTAC CTCTTATGTG GAAGAACATC CAGGTGGTGA
TGCCATTCTA GCACATGCTG GAGATGATTC AACTGAAGGA TTTTTTGGAC CACAGCATGC AACTCGAGTC TTTGACATGA
TTGAAGACTT CTACATTGGA GATTTGGAAC AATAGCCTAG TCAGTAACTC TACAGTTTTA ATGTTCAAGA GATGTATGAT
TTGAGAATTT CAACATTTTA CTCCTTGTTA TCTCCTCAAA TTTTCACTCC TTGTCTGATC ATTCATCTTC ATTAGACAGT
AATTCAGTTG TTGCTGTTGG AATGCATGAT TTTGATATAA TTGGGCATGA AATCATTTGT ATTCTCTGGC CTTTGTGCGC
GCAGTAACAG CAAAAACTGA GCCTTCCCCT TCTTTTCATC ATTATTTTAT CTTAGTTTCT TACCTTTAGC AATTTCCTTT
TCCCTGATTT ACATTATTCA TAGTTTATTG ATATAAACAA ATCTCATCAT ACAAAAATAT TAAGCTAAAT TAAAATATT

>Vigan.11G252700.01
ATGGTATTGC TGGTTGCACT TGCATTGCTT CTGGGTCTCT TCCTCGCTGT TCTTCTTTTC AACCCACGAC ACCGCAAATC
TGGGCACAAG GGAAAAGCTC AAACCAGTTT AAACAATGAT AAGACATCAA AATCCTACAG TAAAACGGAA GTTTCATTGC
ATAACAAGAG AACAGATTGT TGGATAATCA TCAAGAAAAA GGTATATGAT GTTACCTCTT ATGTGGAAGA ACATCCAGGT
GGTGATGCCA TTCTAGCACA TGCTGGAGAT GATTCAACTG AAGGATTTTT TGGACCACAG CATGCAACTC GAGTCTTTGA
CATGATTGAA GACTTCTACA TTGGAGATTT GGAACAATAG 

>Vigan.11G252700.01
MVLLVALALL LGLFLAVLLF NPRHRKSGHK GKAQTSLNND KTSKSYSKTE VSLHNKRTDC WIIIKKKVYD VTSYVEEHPG
GDAILAHAGD DSTEGFFGPQ HATRVFDMIE DFYIGDLEQ*