GBrowse Details

Vigan.11G212900.01

Basic Information:
Name: Vigan.11G212900.01
Multiple alignment
Variant Information
Position: Chr11:33853426..33857425 (+ strand)
Length: 4000
Functional Information:
Description: Similar to Uncharacterized protein. [I1MQH3, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: ATP citrate synthase activity (GO:0003878)
Molecular Function: succinate-CoA ligase (ADP-forming) activity (GO:0004775)
Molecular Function: cofactor binding (GO:0048037)
InterPro: CoA-binding (IPR003781)
Succinyl-CoA ligase, alpha subunit (IPR005810)
ATP-citrate lyase/succinyl-CoA ligase (IPR005811)
NAD(P)-binding domain (IPR016040)
Succinyl-CoA synthetase-like (IPR016102)
ATP-citrate lyase/succinyl-CoA ligase, active site (IPR017440)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.35,33.01,71.54,34.39,73.30,108.98,65.90,45.04
Arabidopsis thaliana homolog: AT5G08300.1, AT5G23250.1
Automatic updates:
Name: NM_001254276 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial-like (LOC100782001), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:33853426..33853500 (+ strand)
Length: 75
Type: five_prime_UTR
Position: Chr11:33853501..33853686 (+ strand)
Length: 186
Type: CDS
Position: Chr11:33853812..33854021 (+ strand)
Length: 210
Type: CDS
Position: Chr11:33854476..33854646 (+ strand)
Length: 171
Type: CDS
Position: Chr11:33855170..33855293 (+ strand)
Length: 124
Type: CDS
Position: Chr11:33855453..33855514 (+ strand)
Length: 62
Type: CDS
Position: Chr11:33856043..33856124 (+ strand)
Length: 82
Type: CDS
Position: Chr11:33856892..33857031 (+ strand)
Length: 140
Type: CDS
Position: Chr11:33857032..33857425 (+ strand)
Length: 394
Type: three_prime_UTR

>Vigan.11G212900.01 class=Sequence position=Chr11:33853426..33857425 (+ strand)
TGGGTTTTGA TCTGTGAAAC AGCAGCAATA GTAGTACAGG AATTCACATT CTCCACTCAA AATACAGAGA CAAAAATGGG
AAGACAAGCC GTCACCAGAT TGCTGTCCTC TATCGCCTCG CGCCGCCATG GCCTCCGCCA ATTCTCGGCG GCCACGCCGG
CTGTGTTCGT CGACAAGAGC ACACGCGTGA TCTGCCAAGG CATCACCGGC AAGAACGGCA CCTTTCACAC CGAACAAGCC
ATCGAATACG GCACCAACAT GGTTCCCTTT CTCTCTCTCC ATTTCGATTT CGATTTCGAT CCATTCGTTT TTTCATTATT
TTCTCGTTAA TCCGCCATCG TATGCACACT TTTTGCGTCT GCTAACCCTA ACTACTGACA CGACAGGTTG GTGGTGTAAC
TCCTAAGAAG GGTGGAACCG AACACCTGGG CCTTCCCGTC TTCAACACTG TCGCTGAAGC GAAGGCGGAA ACCAAGGCCA
ACGCCTCCGT CATCTACGTT CCTCCGCCGT TCGCTGCCGC CGCCATCATG GAAGCCATGG AGGCTGAGCT GGATCTTGTC
GTCTGCATCA CCGAGGGCAT TCCTCAACAC GACATGGTAA GTCGTTTCTC GCAAATTCTG AATTCATAAT TTGCAATTTG
TGAAATAAAC ATTGCACTTT AAGGTTTGTG TTTTCGTGAT CGTGATTGCC TTTTGATTTT GGTATATAGT CTGTCTCCTA
AGTTAAAATT AGTGTCTACA TATAAACTAA TATATAGAAG TTCTTTCATT TTAGTTTTTC TAGAAACTGG TTTTAACTTA
TGCATAGACT GATTTCGTCT TTTAGAAGTT TATTTCATTT TTGTTTTATA TTATTTTCTC TCAAGTTTTC ATGGAGAAGT
TTATTCGAAC ATGTTGAGAT TACATACCTT ACCCTTTAAT GTGAGTTGCT TGCTTTAGAC AAATCAGATC CAACAATGGG
CTAGTTTGAA ATGCCTTGTG TACTTTACTT TTGGATCAAT GCTGCTGAGT TGAGTATAAT GACTGTAGTT GATATTTTTT
TCTATTGCAG GTGCGAGTTA AGGCAGCACT TAACAGGCAG TCCAAGACTC GTCTGATAGG ACCAAACTGC CCTGGTATTA
TCAAGCCTGG GGAATGTAAA ATTGGAATCA TGCCAGGATA TATTCACAAG CCCGGTCGCA TAGGAATTGT CTCTCGTTCT
GGTACCTTGA CGTATGAAGC AGTGAGTATT TGTTTTCATG CAGGGAGAGT ATTTCTTTTA TTGCAACAGT GTGGGATATT
GATTATGCTG TATGTATGGT GATTAGAATA AAAACTATAA ATTGATGCAC CCCTGCTGAT GAATAATGAT GTGTTGGTGA
CATATAAAAA ATATAGAACC ATTGTACTAG AATAATTTCT GTCTATTATT CTACTTTTCA CTGACTGCGT TCTGTGAATC
TTTTGTTCCA CTTGTGATGT TATTATAATT CATGTCTTGA TTATTTCCCT CAGGTGTGTT TGGCATAATA AGCAACTTGC
TTATTTTCTC TGGAACATTT TACTGTCATT ATGACGAGTT TGAAGAAATT CCAACCTTTC AAACATCTTT TCAAATTTTA
ATTGTGTAGC ATTTAGATAA TGAAAAAAAT GATGCTTGTC TATTACTGAG TAATATAATT GTGCCTGGGA TTTACTACCA
TTTGAAAATT GAATTTCCTT TTATTACCGG TGGATAAACC ATATATTTGT TCTTAACTAT TCAGGTTTTC CAAACAACTG
CTGTTGGCCT TGGACAATCC ACTTGTGTGG GTATAGGAGG AGACCCCTTT AATGGAACAA ACTTCGTTGA CTGCCTTAGG
AAGTTTCTAG CTGATCCTCA AACAGAAGGT ATTTTGTCAT AATTTATCTT GTCAAAATAT TAACGTGTGT TCTGTTTATA
AACTACTTTT GTCTTCTGTC CATCCATAGT TTATTTTCCT ATCAAGTGTT CTAGTAAGGT TAATGGGACA TTGTAATTTA
TCGTTACTCT TTGTTTGTGC AAGTCAGGTA TAATTCTTAT AGGAGAGATA GGAGGAACTG CGGAAGAGGA TGCTGCTGCA
CTAATTAAGG TTCCTTTTTA ACTGTTACTG ATGCATAGAT TCATTTCTTT TAGTACTTAT CTGTATCCTA TAAATCAAAA
TAACTTTGTC TGTCTTGTGG GGAAGGGACC CGACCCTCAA TCAATTCAAC TGTCATTAGG TATAAAATTA TTTATTTGAT
CATATATTGT GGACAATGTA AGTCGAGATG ATGGAGCATA TTAAAAATAT TTAACTGTAC ATGGATGGAT AAAGCTACAC
CTGGGCAAAG AGATCATTAG AGGATATGCA TTGATTCCAT GTACCATTTC TATGTAAAGA AAAAAAAAAT CAAATTTGCT
TATTAAAAAA AGCTCAAATT CTTATCTTGG TAGATGTGAA TCTCCTATTT TGGGTGACAA GATGTTAAAT GGTTATTACT
TACTAGTAGT TACTTGGTGA TATTTATGTT AAATACCCCA TTTTATAGAG AAAGCAGTAA AACGTGCTCC TTGTTATCTT
TTTTGTCTAA AGGGCTATTT GTGAGTTTTT AAATTGATTT TATGAATGGC TGAACAGGAA AGCGGCACTG AGAAGCCTGT
TGTTGCATTT ATTGCTGGTT TGACTGCCCC TCCTGGCCGT CGAATGGGTC ATGCTGGAGG TAAGATTTCA TTTTTGGAAT
TGATAGCTTC TGAGAGAAAA TATCATTCTG GCATGTTGCT TTACTCATCA TGATTAGGCG ACAAGCTTTT TGGACATGTT
TTGTTTCTTG CTCATTTGGT TTCCAATTTT TCAGTTTGTA GTTTGGGTTG GTATTTTCAA ATAATCAAAT AATGCTGACT
AAAATTGTAT TGTAACTTTT TATTGTATTT TTTGAGTGTT TCCATTAGCT TTATGCCGTG AGCGGTAGAT AGTATTTTGT
GAACTAATTG GGAGTTTTGT CCACTCTTTT AATCACCTTG GGGCCTGCGA TAGTTCTGGA ATGCAAATCA AAGAGATGGC
TAATTATCCA ATTTAAATAC ACACATATTG TATAATTCAA ATATTAAAAT TGTAATTCTC ACGCTACTTT TATTCTATCT
AAATTTCAAT TTGAAATCCC AATTTTTTGG TTCTAACTGA TGGAAAGTAG ATCTAATTGT TAGATAATGT GGCATTTGTT
AGTTTGGTAT GCAAGCAACT GTTTTTGTTG ATAGTAACCT TCTTTCTGTT TCACTTGTTC GAAAAACTGT GTTTGATATG
TCACGAGTGG CAGCATGATA ACCATGTAGG TTGAATGGTC CTCGAGTGAT TAATCGTCTC TAGGTCTCGT TAAAAATATC
ATTACATTTT GAAAGTGAAA TTAGCATGGG AAATTACATG TTTAGTGGAA CCGTTAAGCA GTATCACCTT TTAATTTATT
CTGTGTTTCA TTTCTATGAC AAATAGCTAT TGTGTCGGGC GGCAAGGGCA CTGCACAAGA CAAAATTAAA ACCCTCAGAG
AAGCTGGGGT GACAGTCGTG GAATCCCCCG CCAAAATTGG AGCTGCCATG CTAGACGTTT TCAAGCAGAG GGGCTTGGTG
CAATAGTTTG GGTTGATTTA ATTTCATCAA ATCATTTTGG GGCACATTAT TTATAACATG TTCAAAATTT CTTGATTCCC
ATTGGTAATG ATGGGCTATT TTTCCCTTTT TTAGTTTTGG AAGTTACGAA GAGGTGCACC AAAATAAAAT TCAAGATGCT
TTATATTTGC GGAAGTTTGA AACGTCCTCT TTGAATTCCG GTTTTCGTTG CTTTGATTTG TAAACGCGTA CCCTCTGCCA
ATGAATTTCG GGCAACTAAA TTGACTTAAA ATTAAATGTC TAGTCTATAA CCTGGGGGTC AGTTATGTCC TATGATAAAA
TTGTGTGAAT TTGTGGTAGC GTTGTTATAG AGACACTTTT GTTACGATGA CAGACATTAG AGTTAGACTT AAATATCCAC

>Vigan.11G212900.01
TGGGTTTTGA TCTGTGAAAC AGCAGCAATA GTAGTACAGG AATTCACATT CTCCACTCAA AATACAGAGA CAAAAATGGG
AAGACAAGCC GTCACCAGAT TGCTGTCCTC TATCGCCTCG CGCCGCCATG GCCTCCGCCA ATTCTCGGCG GCCACGCCGG
CTGTGTTCGT CGACAAGAGC ACACGCGTGA TCTGCCAAGG CATCACCGGC AAGAACGGCA CCTTTCACAC CGAACAAGCC
ATCGAATACG GCACCAACAT GGTTGGTGGT GTAACTCCTA AGAAGGGTGG AACCGAACAC CTGGGCCTTC CCGTCTTCAA
CACTGTCGCT GAAGCGAAGG CGGAAACCAA GGCCAACGCC TCCGTCATCT ACGTTCCTCC GCCGTTCGCT GCCGCCGCCA
TCATGGAAGC CATGGAGGCT GAGCTGGATC TTGTCGTCTG CATCACCGAG GGCATTCCTC AACACGACAT GGTGCGAGTT
AAGGCAGCAC TTAACAGGCA GTCCAAGACT CGTCTGATAG GACCAAACTG CCCTGGTATT ATCAAGCCTG GGGAATGTAA
AATTGGAATC ATGCCAGGAT ATATTCACAA GCCCGGTCGC ATAGGAATTG TCTCTCGTTC TGGTACCTTG ACGTATGAAG
CAGTTTTCCA AACAACTGCT GTTGGCCTTG GACAATCCAC TTGTGTGGGT ATAGGAGGAG ACCCCTTTAA TGGAACAAAC
TTCGTTGACT GCCTTAGGAA GTTTCTAGCT GATCCTCAAA CAGAAGGTAT AATTCTTATA GGAGAGATAG GAGGAACTGC
GGAAGAGGAT GCTGCTGCAC TAATTAAGGA AAGCGGCACT GAGAAGCCTG TTGTTGCATT TATTGCTGGT TTGACTGCCC
CTCCTGGCCG TCGAATGGGT CATGCTGGAG CTATTGTGTC GGGCGGCAAG GGCACTGCAC AAGACAAAAT TAAAACCCTC
AGAGAAGCTG GGGTGACAGT CGTGGAATCC CCCGCCAAAA TTGGAGCTGC CATGCTAGAC GTTTTCAAGC AGAGGGGCTT
GGTGCAATAG TTTGGGTTGA TTTAATTTCA TCAAATCATT TTGGGGCACA TTATTTATAA CATGTTCAAA ATTTCTTGAT
TCCCATTGGT AATGATGGGC TATTTTTCCC TTTTTTAGTT TTGGAAGTTA CGAAGAGGTG CACCAAAATA AAATTCAAGA
TGCTTTATAT TTGCGGAAGT TTGAAACGTC CTCTTTGAAT TCCGGTTTTC GTTGCTTTGA TTTGTAAACG CGTACCCTCT
GCCAATGAAT TTCGGGCAAC TAAATTGACT TAAAATTAAA TGTCTAGTCT ATAACCTGGG GGTCAGTTAT GTCCTATGAT
AAAATTGTGT GAATTTGTGG TAGCGTTGTT ATAGAGACAC TTTTGTTACG ATGACAGACA TTAGAGTTAG ACTTAAATAT
CCAC

>Vigan.11G212900.01
ATGGGAAGAC AAGCCGTCAC CAGATTGCTG TCCTCTATCG CCTCGCGCCG CCATGGCCTC CGCCAATTCT CGGCGGCCAC
GCCGGCTGTG TTCGTCGACA AGAGCACACG CGTGATCTGC CAAGGCATCA CCGGCAAGAA CGGCACCTTT CACACCGAAC
AAGCCATCGA ATACGGCACC AACATGGTTG GTGGTGTAAC TCCTAAGAAG GGTGGAACCG AACACCTGGG CCTTCCCGTC
TTCAACACTG TCGCTGAAGC GAAGGCGGAA ACCAAGGCCA ACGCCTCCGT CATCTACGTT CCTCCGCCGT TCGCTGCCGC
CGCCATCATG GAAGCCATGG AGGCTGAGCT GGATCTTGTC GTCTGCATCA CCGAGGGCAT TCCTCAACAC GACATGGTGC
GAGTTAAGGC AGCACTTAAC AGGCAGTCCA AGACTCGTCT GATAGGACCA AACTGCCCTG GTATTATCAA GCCTGGGGAA
TGTAAAATTG GAATCATGCC AGGATATATT CACAAGCCCG GTCGCATAGG AATTGTCTCT CGTTCTGGTA CCTTGACGTA
TGAAGCAGTT TTCCAAACAA CTGCTGTTGG CCTTGGACAA TCCACTTGTG TGGGTATAGG AGGAGACCCC TTTAATGGAA
CAAACTTCGT TGACTGCCTT AGGAAGTTTC TAGCTGATCC TCAAACAGAA GGTATAATTC TTATAGGAGA GATAGGAGGA
ACTGCGGAAG AGGATGCTGC TGCACTAATT AAGGAAAGCG GCACTGAGAA GCCTGTTGTT GCATTTATTG CTGGTTTGAC
TGCCCCTCCT GGCCGTCGAA TGGGTCATGC TGGAGCTATT GTGTCGGGCG GCAAGGGCAC TGCACAAGAC AAAATTAAAA
CCCTCAGAGA AGCTGGGGTG ACAGTCGTGG AATCCCCCGC CAAAATTGGA GCTGCCATGC TAGACGTTTT CAAGCAGAGG
GGCTTGGTGC AATAG

>Vigan.11G212900.01
MGRQAVTRLL SSIASRRHGL RQFSAATPAV FVDKSTRVIC QGITGKNGTF HTEQAIEYGT NMVGGVTPKK GGTEHLGLPV
FNTVAEAKAE TKANASVIYV PPPFAAAAIM EAMEAELDLV VCITEGIPQH DMVRVKAALN RQSKTRLIGP NCPGIIKPGE
CKIGIMPGYI HKPGRIGIVS RSGTLTYEAV FQTTAVGLGQ STCVGIGGDP FNGTNFVDCL RKFLADPQTE GIILIGEIGG
TAEEDAAALI KESGTEKPVV AFIAGLTAPP GRRMGHAGAI VSGGKGTAQD KIKTLREAGV TVVESPAKIG AAMLDVFKQR
GLVQ*