GBrowse Details

Vigan.11G174100.01

Basic Information:
Name: Vigan.11G174100.01
Multiple alignment
Variant Information
Position: Chr11:28834220..28838593 (- strand)
Length: 4374
Functional Information:
Description: Similar to SNARE family protein. [B9HAR1, Populus trichocarpa]
GO: Biological Process: transport (GO:0006810)
Biological Process: vesicle-mediated transport (GO:0016192)
Cellular Component: integral to membrane (GO:0016021)
InterPro: Synaptobrevin (IPR001388)
Longin domain (IPR010908)
Longin-like domain (IPR011012)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:58.05,53.11,68.82,54.46,66.88,65.78,74.70,71.61
Arabidopsis thaliana homolog: AT5G58060.2
Automatic updates:
Name: NM_001250290 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative vesicle-associated membrane protein (LOC100306336), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251163 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499670 (LOC100499670), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:28834220..28834663 (- strand)
Length: 444
Type: three_prime_UTR
Position: Chr11:28834664..28834714 (- strand)
Length: 51
Type: CDS
Position: Chr11:28836656..28836742 (- strand)
Length: 87
Type: CDS
Position: Chr11:28837288..28837353 (- strand)
Length: 66
Type: CDS
Position: Chr11:28837508..28837612 (- strand)
Length: 105
Type: CDS
Position: Chr11:28837801..28837898 (- strand)
Length: 98
Type: CDS
Position: Chr11:28838207..28838399 (- strand)
Length: 193
Type: CDS
Position: Chr11:28838400..28838593 (- strand)
Length: 194
Type: five_prime_UTR

>Vigan.11G174100.01 class=Sequence position=Chr11:28834220..28838593 (- strand)
ATAATAATTA GTTATAATTA TGGTTAGTGT TGTTATTATA TAAATAAAAT TATGCAACTA CACACGTCAA TATTTTTTGT
AATAGAGAGA GCCATTTTTT CTGTTTCCGA TCTGCTGTCT TTCTTTCTCG TTGTAGTGTT ACAATTTTTC AGAGATAGAG
AGAGAGAAAA TCTAGAGCGA GAGATAGAGA AAAGATGAAG ATCACAGCGT TGTTGGTGCT TAAATGCACA GGTGAAGGTT
CCGATCCCGT GATTCTCGCG AACGCTTCCG ATGTTAGCCA CTTCGGCTAC TTTCAACGCC ATAGCGTCAG GGAGTTCATC
GTCTTTGTCG GTCGTACCGT CGCCAAACGC ACCCCTCAAG GCCAACGCCA ATCTGTACAA CACGAAGGTT CTTGTCCTTT
AGATTCCGTT TTTTAGGGTT TCTTTCTTTT CCCACCTTGT TGCTTACCGA CACCGATCGC GCGTTTGGGT CATTGCGCGG
TCGTTTTTGT TGACCCGTAT TCGGTTTATC ATATATTTCC CTCTTTGCTC CCCTTCAGAG TAATAGAAAT CGTAATTTTT
AAAATTGGCG ATGTGATATA ACCGTATTCT TTGATCTGCG GTGATTTCTT TGGTTTTCTG GAGGGTTCGA TTTTAATTTT
TTTTTTGCCG AATTGTGAAT GATTGAAAAC GTGTTCTTTT CTTTTTTGAT TGCAGAATAT AAGGTGCACA CCTATAACAG
AAATGGTCTT TGTGCGTTGG GATTTATGGA TGATCATTAC CCGATTCGAA GTGCCTTTTC TCTTCTAAAC CAGGTGAGAG
TCAGAGCATC GCGTGTGTGT TCAGTGTTGT GTTTTATTGA CGGATTTTTG CTGCTTCCTT TGTTAGGATG AGACATGATA
ACTATTCTGA GGATGTTATA ATTGTGTAAG GGGTTTGTGT TTTATTTATT TATTTTGTGG AGATTCTATA GGAAGAGCTG
ACTGTAACTA TAAAAATGCA GGTGATAGAT GAATATCAAA AAGCTTTTGG TGAGTCATGG AGAACTGTAC AGGAAGACGG
TACTCAACCA TGGCCCTATT TGAATGAAGC TCTGACAAAA TTCCAGGCAT GTAAATTCCT CGTCTATATT TTGTGAGCTG
CAGCTAAAGG ACTCGTTGAT TCTTTTTTTT CTGTTTAATA AATTGTTACA TTTTGGTATC CTTTTAACAC CATTACTTAT
GCCTCAAACC CCCTTTTATC TGTTCCTGTC AAATCATCAG GATCCTGCAG AGGCTGACAA ATTGTTGAAA ATCCAGAGAG
AGTTAGATGA AACAAAAATC ATCCTTGTAA GCATACATTG ATTTATATTT GCAAATCAGT ATACCGATTC CCTGCATCTC
TTGTCTTCCA AAGTTACGTA AGATATTTTT GTCATGTAGT TGTTCAATTA TAGACGTGAT ATATGTCTGT ATTTTTTGTT
TGAAATTCGT TTGAGAAACT GGCACTTTTA ACCAAATACA TTTAGGTTTA GATTACAATA CCAGCAGCAT GTGAGTTAAG
TATCATTTAA ATGAACTCAA ATGCAACGAA GTAACGCTAA TTTGTCTCTT TCTAGCATTG TGATAAGATG CCCTCGATTT
TACATTATGT CTATCAGTGG TTCATCAATA ATTTAGTTGC TATTAGTTAT TTCTTCCTGA TTAGTTGCTG TTTCTTATTG
ATGTGCATTT ACTTGGTTAT GTTACTATAA ATGGGTAGTT GAGAGTTGGG CCTTCTAGGT GGGTTGTGAG GTTTTGTTAG
TTTCTTCCTA CATAATAGGT TTGTTTAGAT TCTCCAGTTT TCTGGCATGT AGATTTCTTT GACCATATGA TTGCTTCCTG
TTTATGAACA GCATAAGACT ATTGATAGTG TGCTGGCTAG AGGGGAGAAG CTGGACAGTT TAGTTGAGAA GAGTTCTGAT
CTGAGTGCCG CATCCCAGGT ACATCTAAAC AACTTGTGTT ACACAAATTT TCATTTGGGA CTAGTACAGC AATGCTACAT
ATAGTCAGGC ATCTATTATT GTCTGACATA TTTTTTGTCT TGTCTACATG TTTGTGGTCA TCATTGAGTA TGCGTGCATG
ATAAATGTAT TATGTAGCTT TGTGATTAAT CTCTTTTCTT GCTGTTCAAA ACTTCTCTAT ATGCTTTTCC AGTAGATACA
AAATGCATTA ATATGGAAGA TGTGTAATAA ATAACATGCC AGTTCGGAAC TTAAGATTTT TATTTATTGC AAGTAAATAA
AAATAAACTG TGAAAAAAAA TTAAAGTATA ATACAAAATA AAATCTAGAC TTATAAGTAT ATGAGTGTAC GCAAGTTCAA
ATCATTCATA ATTGATGACA GTACAACTTG ATAGTTGAAC TCGCACATGC ATTGATAAAT TCTTTTGTGC AATCAATTAT
CAACAAAAAA TGTACTAATA TTTTATGAAA TAGGGAATGT AAATATTTAG TCATATTCAA CATACAGACA ATTTTATATA
TCTATGGATA ATTAAGAAAA CCTATTGAGT TATGCGGGAT ATGCCTATAC AAGCCAGTGG GTTGACATGT GCAGCCTGCT
CTGTTTGTTG CAAACTGAGG GATGCTGCTA ATAAGATTAT TGGCAAGGTC GTGGTGTTCA AAATATTTCT TAGGATGTGC
ATTTTTGTCT TAAAACACTG TTGTCACGGC TGCCTAGTGT GTTTTTACCA TTATATAAAG GGGACACGTT TTATTTTAAT
TGTTTTTGGT GTTAATTTTA ACTAGGCTAA AAGTCATTAT TTGATAAAGA TATAAATTGG TCGCCTTACA AATATTTTTA
TTTTACCACA CAATCCTTTC GAAACCACTT TTACAAAATT ATACGTTTTT TGTTTTGTTA TTTTTAATTG TGTTATTTTA
GTATAATAAA ATTGTGGGTA TTTGTGTCTC CGCTACTGTA TTATTTTAGA AGGAAGAATA GAATCTCTTG GTGAGGGTAT
GTTTTATTGA CTTTTATAAT TAATATATTT TTATTGTAAC TAAGGTTCTG CAAGGATAAA TTTTTCATAA GCACTGGTCG
GACAACAAAA TAAGAAAGAT AAAATAAGCT TCTCCATAAA ATAAAATTAG CCTTGTGCAA AAGTTAAAAG AATTAGATTT
TGGGGAAGCT AATACTGAAG AGTTTGTACA TCTTAATTTA TGAATAAACT AATTTTATTT AATTGAGAAA CTTATTTCAT
TTTTCGTTTG GTATTTTTTC TCTTGAAAGT ACTTGTGAAG AAGTCCATCC AGACCCTAAG TCAGCACAAT CTTTAGATGA
AATTTTATTT CTTCACTTGT TCTTTTGAAT AGTTTTACAG TCTATTTAGA TGATATATTT TTTTCTCATT TTTTTAGCTT
TAGGAACTGA ACAAAATTAA AATGCAAAAG GTTCTTCAAT TATTTTTTCC TTTTTTCGCA TTGTTTCAAT CATTTCTTGC
AGAGTATATA TACTCTATAA AGTAGTAAAT TTATAAGGCT TGGTCCAATA TTTATGCTTG TAATTATTTC AATAATTTCT
TTTTTGTTAC TTATTTGCTA TTTAATTATT GAATTAAACA CCATTTTGGT GCCTAAAGAT TTGAGATGTC ACATTGGTTT
CTGAAAGGGA GAAAAGTGGC CATTTTCATC CTTTGAATAT TAAGATATCG ATTAATTTAA TTTCTGAGTC TAAATTGATG
TAAAAATGGT GTTTTTTTGG ACGTAATATG AATATGTGAG CTATATGGTT ATTTCATTTG CATAGAATAT GATTTCTTTA
TGCATTTGAA AGCACCATGT TTGGTTTATC CTTAGAAGAT AACTGTGTTA ATCATGAATG TATTATTTTT TCCTCTAGTT
CGTTTTACTG ATTCAATCTG ATGTTGACGT TTGAAACAGA TGTTCTATAA ACAAGCCAAG AAAACCAATC AGTGTTGTAC
TATATTGTAA GCTTTGACCA TCAATATGCT GCGAGCTTAC TTGAATCCTG TTCCGACATG GAGATTATTG TTGGACAGGA
GAAAATAGCT TCATATGTCT ATCACTTTAC ATTGTTTGGT TGGTGAAATT ATGATGTGAT TTACCTGATA TATGTATTGT
CTTACCGTGT GACAAATTCA AATACCCATT TACCTTGTGA TGTTCACTAT GATAATTTAT AGTATCCATA AGTTATTGTT
CTGGTTGAGT CATTCCATGT TAGTTTGTTG TTAGATATTG ACATTGACAC CCTCTTTCGC GTTTTTTTTT CTTGACCTTG
GGGTGGTTTT TGCCATCCTA TTCAGACAAG AAGATGCTCC ATTTAATTAG AATTTACATT TGGTTTGTAA AAGATGGAAA
TTGAGATGCT GATTGGTAGG CTGGTGAATA AACTTTTATA TAAATGAGTC TTCG

>Vigan.11G174100.01
ATAATAATTA GTTATAATTA TGGTTAGTGT TGTTATTATA TAAATAAAAT TATGCAACTA CACACGTCAA TATTTTTTGT
AATAGAGAGA GCCATTTTTT CTGTTTCCGA TCTGCTGTCT TTCTTTCTCG TTGTAGTGTT ACAATTTTTC AGAGATAGAG
AGAGAGAAAA TCTAGAGCGA GAGATAGAGA AAAGATGAAG ATCACAGCGT TGTTGGTGCT TAAATGCACA GGTGAAGGTT
CCGATCCCGT GATTCTCGCG AACGCTTCCG ATGTTAGCCA CTTCGGCTAC TTTCAACGCC ATAGCGTCAG GGAGTTCATC
GTCTTTGTCG GTCGTACCGT CGCCAAACGC ACCCCTCAAG GCCAACGCCA ATCTGTACAA CACGAAGAAT ATAAGGTGCA
CACCTATAAC AGAAATGGTC TTTGTGCGTT GGGATTTATG GATGATCATT ACCCGATTCG AAGTGCCTTT TCTCTTCTAA
ACCAGGTGAT AGATGAATAT CAAAAAGCTT TTGGTGAGTC ATGGAGAACT GTACAGGAAG ACGGTACTCA ACCATGGCCC
TATTTGAATG AAGCTCTGAC AAAATTCCAG GATCCTGCAG AGGCTGACAA ATTGTTGAAA ATCCAGAGAG AGTTAGATGA
AACAAAAATC ATCCTTCATA AGACTATTGA TAGTGTGCTG GCTAGAGGGG AGAAGCTGGA CAGTTTAGTT GAGAAGAGTT
CTGATCTGAG TGCCGCATCC CAGATGTTCT ATAAACAAGC CAAGAAAACC AATCAGTGTT GTACTATATT GTAAGCTTTG
ACCATCAATA TGCTGCGAGC TTACTTGAAT CCTGTTCCGA CATGGAGATT ATTGTTGGAC AGGAGAAAAT AGCTTCATAT
GTCTATCACT TTACATTGTT TGGTTGGTGA AATTATGATG TGATTTACCT GATATATGTA TTGTCTTACC GTGTGACAAA
TTCAAATACC CATTTACCTT GTGATGTTCA CTATGATAAT TTATAGTATC CATAAGTTAT TGTTCTGGTT GAGTCATTCC
ATGTTAGTTT GTTGTTAGAT ATTGACATTG ACACCCTCTT TCGCGTTTTT TTTTCTTGAC CTTGGGGTGG TTTTTGCCAT
CCTATTCAGA CAAGAAGATG CTCCATTTAA TTAGAATTTA CATTTGGTTT GTAAAAGATG GAAATTGAGA TGCTGATTGG
TAGGCTGGTG AATAAACTTT TATATAAATG AGTCTTCG

>Vigan.11G174100.01
ATGAAGATCA CAGCGTTGTT GGTGCTTAAA TGCACAGGTG AAGGTTCCGA TCCCGTGATT CTCGCGAACG CTTCCGATGT
TAGCCACTTC GGCTACTTTC AACGCCATAG CGTCAGGGAG TTCATCGTCT TTGTCGGTCG TACCGTCGCC AAACGCACCC
CTCAAGGCCA ACGCCAATCT GTACAACACG AAGAATATAA GGTGCACACC TATAACAGAA ATGGTCTTTG TGCGTTGGGA
TTTATGGATG ATCATTACCC GATTCGAAGT GCCTTTTCTC TTCTAAACCA GGTGATAGAT GAATATCAAA AAGCTTTTGG
TGAGTCATGG AGAACTGTAC AGGAAGACGG TACTCAACCA TGGCCCTATT TGAATGAAGC TCTGACAAAA TTCCAGGATC
CTGCAGAGGC TGACAAATTG TTGAAAATCC AGAGAGAGTT AGATGAAACA AAAATCATCC TTCATAAGAC TATTGATAGT
GTGCTGGCTA GAGGGGAGAA GCTGGACAGT TTAGTTGAGA AGAGTTCTGA TCTGAGTGCC GCATCCCAGA TGTTCTATAA
ACAAGCCAAG AAAACCAATC AGTGTTGTAC TATATTGTAA 

>Vigan.11G174100.01
MKITALLVLK CTGEGSDPVI LANASDVSHF GYFQRHSVRE FIVFVGRTVA KRTPQGQRQS VQHEEYKVHT YNRNGLCALG
FMDDHYPIRS AFSLLNQVID EYQKAFGESW RTVQEDGTQP WPYLNEALTK FQDPAEADKL LKIQRELDET KIILHKTIDS
VLARGEKLDS LVEKSSDLSA ASQMFYKQAK KTNQCCTIL*