GBrowse Details

Vigan.11G079900.01

Basic Information:
Name: Vigan.11G079900.01
Multiple alignment
Variant Information
Position: Chr11:9445082..9448166 (- strand)
Length: 3085
Functional Information:
Description: Similar to protein. [F2D1Y1, Hordeum vulgare var. distichum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.97,13.02,12.14,30.90,12.30,10.42,12.69,23.55
Automatic updates:
Name: NM_001248476 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306206 (LOC100306206), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:9445082..9445196 (- strand)
Length: 115
Type: three_prime_UTR
Position: Chr11:9445197..9445612 (- strand)
Length: 416
Type: CDS
Position: Chr11:9446003..9446083 (- strand)
Length: 81
Type: CDS
Position: Chr11:9447620..9447782 (- strand)
Length: 163
Type: CDS
Position: Chr11:9447783..9448166 (- strand)
Length: 384
Type: five_prime_UTR

>Vigan.11G079900.01 class=Sequence position=Chr11:9445082..9448166 (- strand)
CAATTGTTGT AATAAGAGAG TCATCTTTCT CCAACTCCAA CAAACCATTC ATTTTCCCAT GGGACCCATC TCTCAAAATC
CACATCCTCG TTACATTATG CACATCATCC CTTACCATAA CATGACACTC TTGGTAGGAT CACATAATAC AACAAAATGT
TGTTCACATA ACTTCACTTT CAAGGCCAAT CCTCTTTAAC TTCCATTTTT CTCACAAACA CAACTTTTCC CTACCCTTTA
AGTATAACAC CAAAAACCCA CACATATTCA CACGCTTTAC ACATACTTCT TCCCTTTCTA TCTCTCAAGC AAGTGCAGAG
CATTAACTCT GGTTTTCTGT CACCCAGTGA CCGTGATGAT CATAAAGTTT TTGTCTTTTC AGTGATGGGT TCGTGTTCTT
CGGTCCCCAG AAAGGCTAAC GCAGACATGA AGCTCAAACT CTCGTTGGGT TCCAAATCTC AGAGGCTTGT CATTCCTCCA
TCACCCATTA AGGGACAGCC CCAAAATGGG GATTTTAAGT GGTCAACGAC CAACTTCACG GACCATGGTA AGCTCGTTTT
TTTTTTTTGT TTCTGCAGAT GTTGTGTTCA TTGGTTGTTT TTCTCTGTTT TTGTGTCCAA AATTTTAAAT CCGTTATTCT
TGATGTTGTG GGGGGATTGC CCGTAAAGGT GACACAATTG TGGCTACAGT GATTTTAAAA ACCTTGATGT TGTGGTCAAA
ATTGCAGAGG AAGATTTTTC TTAACTTTCT CGTGACTTCT GTTGCTATTA ATGTGTGAAT GTTCCTGGCT ATTTCGTTGA
ATGTGTGATC CTAAGATTAT TGAAAAAAAG TTTTTTTTTT CTTCCTTTTA AATTTCTTTT GGCAAAGTTA TATGATCTTT
TTCAGTGTTG ATGCTTGATT TTATTGAAGC ACGGTTCTCT TTTATTCTTC TGCCCTTTCG TTTCTGGTGA TCTGTTTTGC
ATCTTTGTTT GTGATTTTTG GTCCAATTGA TTTATAAATT GAATTTAATA TCTGTTGTAC TTAGCTATGA TTTGGTCATG
ATACCCAAGT GGAAAATTAT TGGATCCTCT TTAGTCGGTT GTATTCTCCA ATTGGAGGAA GACACGTGTT GTAAATGGCC
CCATCCATCT GTGATGTCTC TCACTGGTTT CATGATTTGT ATTGTGCATA TATGAATATG ACAAGAGAGT TCCAATTAAA
AAAGTATGAA GATTTTTTCT TCATGTTCCA GAAATACTGT ATATTCAATG TGTATACATT ATTGTTTATG TCTTACAATG
AATATAGAAA ATTGCTGATT TATTTGATGA GCCGTTCTTA CACCATAATC TAATTGGGAT AAATCATCAT TGTTTTCTTG
TTTGTTTTGA TTGAGACATC CTTGGATAGT ATTCATTCTT CTCCTTCAAT GTCTACTGCA CGAGAAATGT GATCAATATT
TTTGCTGTAC ATGAATTTTC TGATAGTTTA CCTATTGAAC ATGATTTCTC CTTTTGCTAA ACAATACTTT ATCTTGCCAG
ATTCAATCTG GGCTTAGGAT TAACCTTACA TTACAAACAT CATTTGAAAA CAAGAACAGT ATATTTGTAA ACAGGTTTTA
GAATTTCATG CACCGTGCTT ATTCCAGGGA AACTGCTGGT TGAATTTATC ACATCTTGAT ATTTTATTTG TTGCTTCTTG
TTGATTTAAT TTCATACATT GATACTTTTA ACTGTACCGG CTATTGTTTC ATGGTGATGC TTATTACAAG TGAGAGTGGT
CACTGTCTTT GAATCTTCCA GACTTTTGGT AACAGTAACT CTAATTTTCT TACAGTAAAA AAGAGATGAA GACTAAAGTA
TTGGGTGTCC AAGAATTGTT AATCTGTCTT TTCTGATAAA CTTTACACTC TGCTGCTTGT GTTGATCTGG ATCTATGTGC
GTGATTGTTG TTGACATGTT GCTCTAAAAT GATTGGTTCA AGTGCTTGCT TGTACAGGAA TCAATGAGGT GTTTGGGAGT
ATGAGTTTGT TTCATTTGTT AAAATACTCT CATAGGTTTC ATATCTATGT TTGCAATTCA CAAGCCATTA TTTTCCTGAA
CAGGCAGCAA AGAGGAAGCA TTTTTTGATT CCAAGCCCTG GTTAGACTCA GACTGTGAAG ATGATTTCTA TAGTGTCAAT
GGTGGTAAGG ATATCCTGTA ACTCTCTTTC TTTTGGTGTC CTTTTCTGGC TGAATTAGTT TACTTGGTCA TTTTCTGTGT
ATACACTTGT GAAAACAATT TCATATCTAA CTGTTATATA TAATGTGTTC AATAACTCCT TTAAAAGTCA TACATGGTTG
ATAAAACTGC ATCAAAATTA ATGTCATCAT AATATATGCT GGTGAACAGC ACACTGTCAT GATTTATAGC ATGACATTTA
GCTTGCATGG ACAGTTTATG GAGGAAGAAC TCATTGGTCA TGACAAATTT TGGATATGTT GTTTTACCAT TTTTTTTGTA
ACTTTTCTTT TCACTTGATT TTCATTACTC TCTCCAACCA CCTTCAGCTC TATAGTCTAT TTCATTTTAT GCAGACTTCA
CACCATCTAG AGGGACAACA CCAGTTCACC ACACTTTTGG GACCCCTTCT AGGAGTAGAA TTCCTGGTTC TATTTCTGTT
GCTGAAACAT CCCCAGAGAA GAAAAAGAAA CTGTTGGAAC TGTTTCGTGA AAGTGTGAAA GATGAGAAAG TTGATGATTG
CCATGGACAC AAAGCAGTGA AACCAACCAC ACAACATGTT ATGGCAAAAT CTGCAAATTG CACTCCTTTT ATCTCAGGGG
CTAACTCTAC ATGTAGTAGT GAAAGAACCA TGAGTGAGGA TCGTGCTTCC ATTAGAGAGA AACCAGTTAA GTCTTCGTCA
TGGTGCATTC CGAGCTTGTC CTCATGCAGA AGCTTTAGGG AGAGAAGTAG GAAGACAAGT CCTGCAATAG AATTAAATGG
AAAACATTGA GTTACCCTGC AATCTGATGA ACCAAACTTT CTCTTATGTG TTTAATTTAT ACTCACTATG TTAATGTAAA
ACAATTGTAC ACCAATATTC AATAAAATTT TGTCATCTTA TCTCC

>Vigan.11G079900.01
CAATTGTTGT AATAAGAGAG TCATCTTTCT CCAACTCCAA CAAACCATTC ATTTTCCCAT GGGACCCATC TCTCAAAATC
CACATCCTCG TTACATTATG CACATCATCC CTTACCATAA CATGACACTC TTGGTAGGAT CACATAATAC AACAAAATGT
TGTTCACATA ACTTCACTTT CAAGGCCAAT CCTCTTTAAC TTCCATTTTT CTCACAAACA CAACTTTTCC CTACCCTTTA
AGTATAACAC CAAAAACCCA CACATATTCA CACGCTTTAC ACATACTTCT TCCCTTTCTA TCTCTCAAGC AAGTGCAGAG
CATTAACTCT GGTTTTCTGT CACCCAGTGA CCGTGATGAT CATAAAGTTT TTGTCTTTTC AGTGATGGGT TCGTGTTCTT
CGGTCCCCAG AAAGGCTAAC GCAGACATGA AGCTCAAACT CTCGTTGGGT TCCAAATCTC AGAGGCTTGT CATTCCTCCA
TCACCCATTA AGGGACAGCC CCAAAATGGG GATTTTAAGT GGTCAACGAC CAACTTCACG GACCATGGCA GCAAAGAGGA
AGCATTTTTT GATTCCAAGC CCTGGTTAGA CTCAGACTGT GAAGATGATT TCTATAGTGT CAATGGTGAC TTCACACCAT
CTAGAGGGAC AACACCAGTT CACCACACTT TTGGGACCCC TTCTAGGAGT AGAATTCCTG GTTCTATTTC TGTTGCTGAA
ACATCCCCAG AGAAGAAAAA GAAACTGTTG GAACTGTTTC GTGAAAGTGT GAAAGATGAG AAAGTTGATG ATTGCCATGG
ACACAAAGCA GTGAAACCAA CCACACAACA TGTTATGGCA AAATCTGCAA ATTGCACTCC TTTTATCTCA GGGGCTAACT
CTACATGTAG TAGTGAAAGA ACCATGAGTG AGGATCGTGC TTCCATTAGA GAGAAACCAG TTAAGTCTTC GTCATGGTGC
ATTCCGAGCT TGTCCTCATG CAGAAGCTTT AGGGAGAGAA GTAGGAAGAC AAGTCCTGCA ATAGAATTAA ATGGAAAACA
TTGAGTTACC CTGCAATCTG ATGAACCAAA CTTTCTCTTA TGTGTTTAAT TTATACTCAC TATGTTAATG TAAAACAATT
GTACACCAAT ATTCAATAAA ATTTTGTCAT CTTATCTCC

>Vigan.11G079900.01
ATGGGTTCGT GTTCTTCGGT CCCCAGAAAG GCTAACGCAG ACATGAAGCT CAAACTCTCG TTGGGTTCCA AATCTCAGAG
GCTTGTCATT CCTCCATCAC CCATTAAGGG ACAGCCCCAA AATGGGGATT TTAAGTGGTC AACGACCAAC TTCACGGACC
ATGGCAGCAA AGAGGAAGCA TTTTTTGATT CCAAGCCCTG GTTAGACTCA GACTGTGAAG ATGATTTCTA TAGTGTCAAT
GGTGACTTCA CACCATCTAG AGGGACAACA CCAGTTCACC ACACTTTTGG GACCCCTTCT AGGAGTAGAA TTCCTGGTTC
TATTTCTGTT GCTGAAACAT CCCCAGAGAA GAAAAAGAAA CTGTTGGAAC TGTTTCGTGA AAGTGTGAAA GATGAGAAAG
TTGATGATTG CCATGGACAC AAAGCAGTGA AACCAACCAC ACAACATGTT ATGGCAAAAT CTGCAAATTG CACTCCTTTT
ATCTCAGGGG CTAACTCTAC ATGTAGTAGT GAAAGAACCA TGAGTGAGGA TCGTGCTTCC ATTAGAGAGA AACCAGTTAA
GTCTTCGTCA TGGTGCATTC CGAGCTTGTC CTCATGCAGA AGCTTTAGGG AGAGAAGTAG GAAGACAAGT CCTGCAATAG
AATTAAATGG AAAACATTGA 

>Vigan.11G079900.01
MGSCSSVPRK ANADMKLKLS LGSKSQRLVI PPSPIKGQPQ NGDFKWSTTN FTDHGSKEEA FFDSKPWLDS DCEDDFYSVN
GDFTPSRGTT PVHHTFGTPS RSRIPGSISV AETSPEKKKK LLELFRESVK DEKVDDCHGH KAVKPTTQHV MAKSANCTPF
ISGANSTCSS ERTMSEDRAS IREKPVKSSS WCIPSLSSCR SFRERSRKTS PAIELNGKH*