GBrowse Details

Vigan.11G016700.01

Basic Information:
Name: Vigan.11G016700.01
Multiple alignment
Variant Information
Position: Chr11:1642203..1647574 (- strand)
Length: 5372
Functional Information:
Description: Similar to Serine-type peptidase. [D2DWB6, Phaseolus vulgaris]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: serine-type endopeptidase activity (GO:0004252)
Molecular Function: protein binding (GO:0005515)
InterPro: PDZ domain (IPR001478)
Peptidase S1C (IPR001940)
Trypsin-like cysteine/serine peptidase domain (IPR009003)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:20.20,5.19,20.68,130.02,7.31,20.60,10.34,26.24
Arabidopsis thaliana homolog: AT3G27925.1
Automatic updates:
Name: NM_001255763 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protease Do-like 1, chloroplastic-like (LOC100783304), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:1642203..1642418 (- strand)
Length: 216
Type: three_prime_UTR
Position: Chr11:1642419..1642496 (- strand)
Length: 78
Type: CDS
Position: Chr11:1643648..1643782 (- strand)
Length: 135
Type: CDS
Position: Chr11:1644046..1644198 (- strand)
Length: 153
Type: CDS
Position: Chr11:1644326..1644524 (- strand)
Length: 199
Type: CDS
Position: Chr11:1644909..1644946 (- strand)
Length: 38
Type: CDS
Position: Chr11:1645443..1645614 (- strand)
Length: 172
Type: CDS
Position: Chr11:1646871..1646993 (- strand)
Length: 123
Type: CDS
Position: Chr11:1647100..1647476 (- strand)
Length: 377
Type: CDS
Position: Chr11:1647477..1647574 (- strand)
Length: 98
Type: five_prime_UTR

>Vigan.11G016700.01 class=Sequence position=Chr11:1642203..1647574 (- strand)
ACCGAAGCTC CTTCACACGT TGACAACACT AGAGCAGACC CAAACTGATC CAACCATTTA GCATAAACAG AGACCATTCC
TCTGTCCAAG CAAAAACCAT GGCCACTTGT TCACTCATTT CCACACGCTT CCATTCTCCT TCTTCTTCAC TCTTTCGTTC
TTCAACCATC AAACCCACCA CAACAATTCA CCTTTCCAAA ACCCTTCATC TTCACACTCC CAACCTTTTC CTCCTTCGCC
TCCCATCACC AAAACTCACA ATACCCCTTT TACCCAAACT CTCCATTCCC AAACCTCTTC TCCTTCTCTG CACTTCCCTC
GCCCTCTCCT TCACTCTCCT CGTTTCCAAC GCCGACTCCG CCGCCGCCTT CGTCGTCACC TCGCCGCGGA AGCTCCAGTC
CGACGAACTC GCCACCGTTC GCCTCTTCCA AGAGAACACT CCCTCTGTTG TCTACATAAC CAACCTTGCT GTCAAGTAGC
TACCCCTTTT ATCGATCCTC TTCAAAAGTT GTCTTTGAAT GGTTTTTCGT TGACCCTTTT GCTTTGTCTT TGGGTTTCTC
AACGTGGGGT GTTGTGTTTA GGCAGGATGC ATTCACGCTG GACGTCTTGG AGGTTCCCCA GGGATCCGGG TCTGGCTTTG
TTTGGGATAA GGATGGTCAT ATTGTGACCA ATTATCACGT TATTCGTGGT GCCTCTGATC TCAAGTGGGT ATTCTTTTTC
TTTTGATTAT TTTGTTTTTT TTATTAGTGG TCAATGTACA GATTTTTTTT TTCAATTTCA ACTAATGAAA AATCGTCCTA
GAGGTATTTG GAGCGTTAAT CAATTTTACT AAATTTAAGA AATTGTAATT GGATAACAGG GAAGGAAATA AATATGAGAG
TTTGTTATGT ATGTATTGTG TCAATGTATT CGTTTTTACA ATTTTAACTA AATAGGAATC ATCCTAAATA CGGTCTTTAA
AGTAATTAAC TAATCTTACT GTATATGAGA ATTTGTAATT GGATGACAGA GTAAGAATAA ACTTTACAAT GTCTTTGTTT
TCTAATGAAA TTCTTTTTTT TTTGGGTTAA TTTTCTTGCA CGGTTAGTGT AAAGATTTTT ACACTTTTAG CCAATAAAAA
GTCATTCTAG ATGTCATTTT AAAAATAATT ATGACAAAGG GCAACAATCT TACCATATAC ATGGGAATTC TTTTTTATCC
TATCAGTGTA TTTTAATTAA ATTCTTTTTA CTTTTGGCAT CTTTTGATCC AGTTTCTCAG GCTTGTACCT TTTCTTTTCC
GCCGCTTCTA GTCTGGTCTT GACCTTTGAG TGGTATTATG CTGACAAATA GGAACTTTTT AGTTATGCGG CCAAATATTT
TAATATTATG TGCAATGTGA CATATATCTA TTGCTAAACG AATTATATTC CTAAATATGA AACTTTGATA ACTAATTCAC
AATTATTAAG AAAGTTGGTT AATTTAGGTA GTGACATTAA GTTGGCAGTA ATTAAGTTTT TTCAAACTTT CTCTTGAACA
ATTAATCAAT TGAGAGAGAG TGAAGCCTTA AATTATGAAA TTAACCCTCC AATTCTTCTA TCTTGATAAG AGAGAAGTAG
ACAATTCATA ACATTTATTA TTTATTTGTG AACAAAATTT TTAAGGATAT TATGGTAAAA CAATAATTGA TGCTTGGGAT
GATTAGAAAA CGACAGAGAA ATTTCAAGAC AATTTGTTGT AATCAGGGAC CGAGGGTGTA TAAGTAACCT TGTATTAAAA
CAAAAGGGAG GTGATAATTG TGTGTTACTT TGTACATTTA CACCTCCTTC AACACGTTTG GGTGTGTTTG CATTGCAACT
TTTCCTGGCA TTGAGAAGTG AATTCATAAC ATAGAAAGTT TGCTGATAGA TTGATGTATG TGTTGTGATG ACTTCAGTGA
AGTGATTACT CCTATTCAAA GACATGCTAG TTATGTGCAG GGTCACTCTA GCTGACCAGT CAACTTATGA TGCCAAAGTT
GTTGGTTTTG ACCAAGACAA GGATGTTGCT GTGCTGCGTG TCGAGGCACC AAGTGACAAG CTCAGGCCTA TACCTATTGG
GGTCTCTGCT GACTTGCTTG TTGGTCAGAA GGTTTATGCC ATTGGGAACC CGGTGCGTTG TCCATACCGA TCAATGCATA
TTGTGTTGTA AATATTCATT ATCTATGAAT TTTCCAATAT AAAGAAATGA TGGCAATCCT GGTTGAATCT AATATTAATT
GGAGCTTTAG CTAGAATTTT TATAAGCAGG TGGATTTTGT TCTACTTAAA TCATACTTTT AACATTTGTC TCATTTAATC
TATTATGTAG TTTGTATAAT TATATAATTA TTTAGTCAGC ATTTCCTGCT CCAGTTGTAA ATGTGTATGC AAAATATCAT
GTTAAAAAAT GCATTGGAGA TCTGAGTTAT GAATGCCTGT GATGTAAAGG CAGACTTGTT TTCGAAAGAT AAGAAGAAAA
TTACTAAATT TGTAAATTGT ACCTTGTAAT TGCTGCCAAA CTGCTTTATG GAGCTGTATT CATGGCTCAA ATGCTATTTT
CTGTTGATGA TTGACACCAC GAACTCTTCT TGAATATGCC AATATGATTC CTCATTCTCA TCTTGCAGTT TGGACTAGAT
CACACACTCA CAACAGGGGT CATCAGGTAT GAAAACTTAA AACTGTGAAG TGAATATTTT GATGTAACTC CCATTACCTA
GAAAAACAGT TTCTACTTTG CTATTCCTTT TTATTTCCTC GTGCCAGATT ATACATTTGT GAATCAAACC TTTTATATTA
AGGAGTCTAG AAGTGGGATG CCATTAATCC CTTTCAAGAA TAAATGTGTT ATAGTTAATA CAACATCTTC CCATCTCTTT
CCCTCGAAAT CTCAACTTTT TAAGCATGGT ATTCTTTAGG TTAATACTGT TTTTCAAATG TTCACATCAT TGTGCTGATA
CTTGATAACT TGAAAGGTGG TTACTCTGTC TTTCCTTTTT ATGTTTCTTT TGTGTTGATT GTGTTTCACT GATACATATG
TCTTCAACAG TGGTCTTAGG CGAGAAATTA GTTCTGCTGC AACCGGTCGT CCAATTCAAG ATGTTATTCA GACAGATGCA
GCAATTAATC CTGGTAACAG CGGAGGGCCT CTCTTAGATA GTTCTGGAAA CCTCATTGGG ATAAATACAG CCATATATTC
TCCATCTGGC GCATCCTCTG GTGTTGGATT TTCTATTCCA GTGGACACTG TGAGTTCTTA CTTTGACTTG TTTTTAATTT
ATATATCCAA TTCTTTCTTC AGGGGACAAC TTTTTATGGA AACATAGTAA TCCTCTGAAT AAAATTGCTA ATGTGCTTGT
TGTTCTATAT ATTCAGGTAA ATGGTATTGT TGACCAATTG GTGAAGTTTG GGAAGGTTAC AAGACCTATT TTAGGGATTA
AGTTTGCTCC AGATCAGTCT GTGGAGCAGT TGGGTGTAAG TGGAGTGCTT GTGTTAGATG CTCCTGCCAA TGGTCCTGCT
GGGAAAGCAG TAAGTTTGAT CAAAGATTAT TTTTATACGA AAGGGGAAAT TCATTACGAA ATTTCAGCTA TATGCGCCGA
ATAGGGTCAT AGATTTCATG TTAATATAAA CTTGGCCTCT TTACTTCCAC TAAAGCTAGT CACTAAAAAT GTTAATGCCA
CTAACACATC CTAAGCTTCA TTATCACATA TTAAAACTAA TACTGATTTG CTTTATCTTA ATTTACTAAA CTACAATCTT
TCAATGGAGC CTGGCTAATT TCTAGTTTTC AGGGCCTGCA ATCAACAAAG CGTGACTCGT ATGGTAGACT CATTTTAGGT
GACATCATAA CGTCTGTGAA TGACAAGAAG GTTACTAATG GAAGTGATTT GTACAGAATT CTTGACCAGT GTAAAGTAGG
TGAAAAGGTA TGATGCTGAT TCAACTGTTC TATTGTTTCT TCAAAAATGT ATAACTTTTC TATTTTCAAA ACTATTACTA
GATCCTGGAT TTCTAAAGCA AATAAAAATA TGATGCAAGA ACATTTACAA ATTTACCTTC AATGTGTGTT TAAGCATATG
TTTGACATGG CAGCATATTT ATGGTTATTC TTAATCTATG TAAAAAAACC TTAAATTATA GTCCCGGAGG TAGTATATAA
TACACCCTTT TAATATTTGG TCAGTCTGGA AAGATTCAAA TCAAAACATC GTATTCTCTC TTGTCCGTAC AAACTTTTAT
TGTAACATGT GTATCATAAT AACATATAAG TTCGTCTGAA TAGTAATAAT CAACAGAAAA ATGAAAATCT TGGAAGAATG
GAACGAAAGG GCTATCTAGT TTTATGGCTG TTTAATACTG TTCTGTCTCA CTAACCACAG TCAAAGCTAA TTTTAACAGG
TTCAGATTTT AGAAATTAGA CCAAGTTGTT TCAAGGATGA GTTTGGATTA TACTTCAATC ATCCCAAACC TGACTGATGC
ACATATTCTG AATATACTTT TTTTAACCAA TATTGGTCAT AATACTTCTT GACTTATGTT TTATGAATTT GATTAGAATG
CACTACAGTG TAAAGGTTCT TCATACTGTT ATCAATCACA TCTTGTTATG GAATATAAAT CTGTTTACTT ATATAATAAC
TATTTTTAAA GATCATATTT GGCATAGTAT TTTATTGACT AACAGTAAAA AATATTTATT AATAGTGCAT AGAAATTCAA
CTTATATATC AGGTCATACT TTAATTTTAC GATTTACCTA CTTATAATGT TAAAAGTGTG ATATATTATG TCTCAACAGA
AAGTCCTGAC TCGGTCCTCT TCCATACATC ACTGAATCTT GAGTCTTGTT CAGAACAAAT TCTAATCAAA TGACCTTATC
GAAAGTTCAT GCTGAGTGGG ATACCCAAGG GAAATCCAGC GTATAAGACC TATGTATTTT CTTAATCTGT TTTTAAACTT
GGTGTTGAAT TGCTTCTATG TAAAACATCT CACCCTGTGC TAAATAACTT GCATTGAGAG ACTCAATTTG AAGCTACTTT
ATTTTCCTAG TTTAATGGTT AATGGTGTTG CTATTCAGGT GATTGTTGAG GTTTTGAGAG GTGATCACAA GGAGAAGATC
CCTGTCATTC TGGAGCCAAA ACCTGATGAA TCATGATCAC AAGGATTATG TATATATACA ATTCACATGC GATTACCAGA
GAGTGAATGA AGCTGTTTTA TGGGTATTCT TTAGTTGTTG TATCTTGCTT CATAAACAGC TCCAATTGTA CATATATATA
TATATATACA TACTATGGAA CTGAAAGCTC ATCATCCTTT AACTTTTTCA CTCTTAAACA TAATATAATT TGGCAGTTCT
ATTTTGCCCC CA

>Vigan.11G016700.01
ACCGAAGCTC CTTCACACGT TGACAACACT AGAGCAGACC CAAACTGATC CAACCATTTA GCATAAACAG AGACCATTCC
TCTGTCCAAG CAAAAACCAT GGCCACTTGT TCACTCATTT CCACACGCTT CCATTCTCCT TCTTCTTCAC TCTTTCGTTC
TTCAACCATC AAACCCACCA CAACAATTCA CCTTTCCAAA ACCCTTCATC TTCACACTCC CAACCTTTTC CTCCTTCGCC
TCCCATCACC AAAACTCACA ATACCCCTTT TACCCAAACT CTCCATTCCC AAACCTCTTC TCCTTCTCTG CACTTCCCTC
GCCCTCTCCT TCACTCTCCT CGTTTCCAAC GCCGACTCCG CCGCCGCCTT CGTCGTCACC TCGCCGCGGA AGCTCCAGTC
CGACGAACTC GCCACCGTTC GCCTCTTCCA AGAGAACACT CCCTCTGTTG TCTACATAAC CAACCTTGCT GTCAAGCAGG
ATGCATTCAC GCTGGACGTC TTGGAGGTTC CCCAGGGATC CGGGTCTGGC TTTGTTTGGG ATAAGGATGG TCATATTGTG
ACCAATTATC ACGTTATTCG TGGTGCCTCT GATCTCAAGG TCACTCTAGC TGACCAGTCA ACTTATGATG CCAAAGTTGT
TGGTTTTGAC CAAGACAAGG ATGTTGCTGT GCTGCGTGTC GAGGCACCAA GTGACAAGCT CAGGCCTATA CCTATTGGGG
TCTCTGCTGA CTTGCTTGTT GGTCAGAAGG TTTATGCCAT TGGGAACCCG TTTGGACTAG ATCACACACT CACAACAGGG
GTCATCAGTG GTCTTAGGCG AGAAATTAGT TCTGCTGCAA CCGGTCGTCC AATTCAAGAT GTTATTCAGA CAGATGCAGC
AATTAATCCT GGTAACAGCG GAGGGCCTCT CTTAGATAGT TCTGGAAACC TCATTGGGAT AAATACAGCC ATATATTCTC
CATCTGGCGC ATCCTCTGGT GTTGGATTTT CTATTCCAGT GGACACTGTA AATGGTATTG TTGACCAATT GGTGAAGTTT
GGGAAGGTTA CAAGACCTAT TTTAGGGATT AAGTTTGCTC CAGATCAGTC TGTGGAGCAG TTGGGTGTAA GTGGAGTGCT
TGTGTTAGAT GCTCCTGCCA ATGGTCCTGC TGGGAAAGCA GGCCTGCAAT CAACAAAGCG TGACTCGTAT GGTAGACTCA
TTTTAGGTGA CATCATAACG TCTGTGAATG ACAAGAAGGT TACTAATGGA AGTGATTTGT ACAGAATTCT TGACCAGTGT
AAAGTAGGTG AAAAGGTGAT TGTTGAGGTT TTGAGAGGTG ATCACAAGGA GAAGATCCCT GTCATTCTGG AGCCAAAACC
TGATGAATCA TGATCACAAG GATTATGTAT ATATACAATT CACATGCGAT TACCAGAGAG TGAATGAAGC TGTTTTATGG
GTATTCTTTA GTTGTTGTAT CTTGCTTCAT AAACAGCTCC AATTGTACAT ATATATATAT ATATACATAC TATGGAACTG
AAAGCTCATC ATCCTTTAAC TTTTTCACTC TTAAACATAA TATAATTTGG CAGTTCTATT TTGCCCCCA

>Vigan.11G016700.01
ATGGCCACTT GTTCACTCAT TTCCACACGC TTCCATTCTC CTTCTTCTTC ACTCTTTCGT TCTTCAACCA TCAAACCCAC
CACAACAATT CACCTTTCCA AAACCCTTCA TCTTCACACT CCCAACCTTT TCCTCCTTCG CCTCCCATCA CCAAAACTCA
CAATACCCCT TTTACCCAAA CTCTCCATTC CCAAACCTCT TCTCCTTCTC TGCACTTCCC TCGCCCTCTC CTTCACTCTC
CTCGTTTCCA ACGCCGACTC CGCCGCCGCC TTCGTCGTCA CCTCGCCGCG GAAGCTCCAG TCCGACGAAC TCGCCACCGT
TCGCCTCTTC CAAGAGAACA CTCCCTCTGT TGTCTACATA ACCAACCTTG CTGTCAAGCA GGATGCATTC ACGCTGGACG
TCTTGGAGGT TCCCCAGGGA TCCGGGTCTG GCTTTGTTTG GGATAAGGAT GGTCATATTG TGACCAATTA TCACGTTATT
CGTGGTGCCT CTGATCTCAA GGTCACTCTA GCTGACCAGT CAACTTATGA TGCCAAAGTT GTTGGTTTTG ACCAAGACAA
GGATGTTGCT GTGCTGCGTG TCGAGGCACC AAGTGACAAG CTCAGGCCTA TACCTATTGG GGTCTCTGCT GACTTGCTTG
TTGGTCAGAA GGTTTATGCC ATTGGGAACC CGTTTGGACT AGATCACACA CTCACAACAG GGGTCATCAG TGGTCTTAGG
CGAGAAATTA GTTCTGCTGC AACCGGTCGT CCAATTCAAG ATGTTATTCA GACAGATGCA GCAATTAATC CTGGTAACAG
CGGAGGGCCT CTCTTAGATA GTTCTGGAAA CCTCATTGGG ATAAATACAG CCATATATTC TCCATCTGGC GCATCCTCTG
GTGTTGGATT TTCTATTCCA GTGGACACTG TAAATGGTAT TGTTGACCAA TTGGTGAAGT TTGGGAAGGT TACAAGACCT
ATTTTAGGGA TTAAGTTTGC TCCAGATCAG TCTGTGGAGC AGTTGGGTGT AAGTGGAGTG CTTGTGTTAG ATGCTCCTGC
CAATGGTCCT GCTGGGAAAG CAGGCCTGCA ATCAACAAAG CGTGACTCGT ATGGTAGACT CATTTTAGGT GACATCATAA
CGTCTGTGAA TGACAAGAAG GTTACTAATG GAAGTGATTT GTACAGAATT CTTGACCAGT GTAAAGTAGG TGAAAAGGTG
ATTGTTGAGG TTTTGAGAGG TGATCACAAG GAGAAGATCC CTGTCATTCT GGAGCCAAAA CCTGATGAAT CATGA

>Vigan.11G016700.01
MATCSLISTR FHSPSSSLFR SSTIKPTTTI HLSKTLHLHT PNLFLLRLPS PKLTIPLLPK LSIPKPLLLL CTSLALSFTL
LVSNADSAAA FVVTSPRKLQ SDELATVRLF QENTPSVVYI TNLAVKQDAF TLDVLEVPQG SGSGFVWDKD GHIVTNYHVI
RGASDLKVTL ADQSTYDAKV VGFDQDKDVA VLRVEAPSDK LRPIPIGVSA DLLVGQKVYA IGNPFGLDHT LTTGVISGLR
REISSAATGR PIQDVIQTDA AINPGNSGGP LLDSSGNLIG INTAIYSPSG ASSGVGFSIP VDTVNGIVDQ LVKFGKVTRP
ILGIKFAPDQ SVEQLGVSGV LVLDAPANGP AGKAGLQSTK RDSYGRLILG DIITSVNDKK VTNGSDLYRI LDQCKVGEKV
IVEVLRGDHK EKIPVILEPK PDES*