GBrowse Details

Vigan.11G016600.01

Basic Information:
Name: Vigan.11G016600.01
Multiple alignment
Variant Information
Position: Chr11:1635208..1639886 (+ strand)
Length: 4679
Functional Information:
Description: Similar to Carbonic anhydrase. [H9CXY5, Vigna unguiculata]
GO: Biological Process: carbon utilization (GO:0015976)
Molecular Function: carbonate dehydratase activity (GO:0004089)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Carbonic anhydrase (IPR001765)
Carbonic anhydrase, prokaryotic-like, conserved site (IPR015892)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.85,0.52,10.76,3236.13,0.51,14.58,5.86,72.77
Arabidopsis thaliana homolog: AT3G01500.2
Automatic updates:
Name: NM_001317298 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata carbonic anhydrase, chloroplastic (LOC106771342), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354786 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max carbonic anhydrase, chloroplastic (LOC100500448), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001360396 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max carbonic anhydrase, chloroplastic (LOC100781868), transcript variant 1, mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:1635208..1635640 (+ strand)
Length: 433
Type: five_prime_UTR
Position: Chr11:1635641..1635841 (+ strand)
Length: 201
Type: CDS
Position: Chr11:1636998..1637056 (+ strand)
Length: 59
Type: CDS
Position: Chr11:1637165..1637314 (+ strand)
Length: 150
Type: CDS
Position: Chr11:1637408..1637456 (+ strand)
Length: 49
Type: CDS
Position: Chr11:1637733..1637849 (+ strand)
Length: 117
Type: CDS
Position: Chr11:1638122..1638175 (+ strand)
Length: 54
Type: CDS
Position: Chr11:1638313..1638398 (+ strand)
Length: 86
Type: CDS
Position: Chr11:1638619..1638724 (+ strand)
Length: 106
Type: CDS
Position: Chr11:1639155..1639319 (+ strand)
Length: 165
Type: CDS
Position: Chr11:1639320..1639886 (+ strand)
Length: 567
Type: three_prime_UTR

>Vigan.11G016600.01 class=Sequence position=Chr11:1635208..1639886 (+ strand)
CTTTCTTTTT CATTTTATCT CATAAATGCA GACCCTCATA AGAATTAACG TGAATCTCAT AGATAATATC TACAAACAAT
GTTATGGTCC ATAGCTGACA AAGTGCTAAT CAAGCACCTC ATGATCAGAA GTCAAGAAAA CCAATTTTAA TTAGTGCACA
CCGAAAATCT ATGGCCATTT TGTGTGTTTG TGAAGGTGAA TGGCAAAAGG GGTGTGTGTG ATCCAAAGTG AGAAAGGGTT
ATGGTCATTC TCTCACAGTT AATCTCCAAC ATTCAAACCT CATCTACAAG GATAGGAATG AAGCTCTCAT TTGTTTGGCT
TTCGTTTTCA TTATCTGCCA AAGGTCACAT AAAATGGGGA TACCCTATTG ACATGCCACA CCAGATTGCA TCAAAGGGCT
ATATAGCATA AAGTTTTGAG TCCTCATTGC ACCATGTCGT CCTCTTCCAT AAACGGTTGG TGCCTCTCTT CAATCTCCCC
AGCCAAAACC TCTCTTAAGA AGGCCACATT ACGACCTTCT GTCTTTGCAA CCCTCACCAC TCCTTCTTCT CCTTCGTCTT
CCTCTTCTTT CCCTTCTCTC ATTCAAGACA AGCCTGTCTT TGCTGCACCT TCCCACATCA TCACCCCAAC TGTGGTATAT
ATGCACTACT CTTTCATCAT TCATGCATTC AAGTTCATCA CATGAAAAAT GATTATTTGA CACACCTAAA TTTTTTACAT
TCGTGATATA TATATTACTG TTGTTGTTGT GACTGTTATT TATCATGCAT GACAGTTTAT GTTTATGGTT AGACTACACT
TCAAAATTTA CACTCTTGCT GCATGAATAA ATACTTTGTT GTTTTCTTTT GTATGCTTTC TTCTGTAGTT TTCAAGTTCC
AAGACACATA CTGATCAGTT TTCAATTTTG GAACACAATG TGTGTTAGTT GTTATAATTA TTCGTTAGAG TTTGACTTTT
CTACCTAGTT CGTGTGAAAA AACATTTCTT GCATCAAACA ATCAGACATC ATTAAAGTCA ACCAAACTTA CTCAGTTTGT
GATGGAATAA TGGTGATGTA AAATTTCTAT TATGGGTTAT TTTTACTGTT TTGTTTTTGT GTGCTTTACA ATTTAAGGGA
CGCAAATTCT TATCCTTGGT TTGCAGATTT GGATCACAAC GAATGTGTTT TTGACTAGTC ACTTGTCACG TATATTAATT
GGCCTAGCTA GGTCTTCATG TGCTTAATAA TCTAACATAG TCCACGTATA TGGGGTTGCC ACTATGAAGA AAAATGTTTA
AGTGTGCTGT TTAAAGTTTA GTTTTCACGT GGAAACACCG TTTGATCTTT CTTTGGCACC TACCACATAT GCACATTGTT
AGCTTGGTTA GGTGACAGAG ACAGGTGTGT GGCATGGATT TGCTCATGAA CTACTGGCAT GTGTCAGCAT CCACCACCAT
AAAATTATCA AATTTATTTT ATTAGAACTA CATATAACAC GAATTAGCGT TGTATTGGGG GAAGTGTGTG TTAGTTGGAT
GATTCTAAGG CCAACAAAGC AGCAAATCCA AACTACTATA TATAGAAGAA AAAGTCCATT CAAAATTAAA CAGCTTTCCC
AACCAAGTTA GCAACTAATT AATCATCTGA CAGTGTAAAA CCAATTTTCA ACTTTTCTGA GGTTTGACAC TATTTCCTTA
CAAATATATT TGAATTTTGG TTTCTCATTT CTTTATTAAG GTAATTTTGC TACTAACTAT TAGTTTTTTG TTTGGTCTTT
TAACTGACAC GTATTTATTC ATTTTTGGAG AGAGAGGATA TGGCAAAGGA CTATGAGCAA GCTATTGAAG AACTCCAGAA
ATTGTTGAGG TGAGTCTCAA CCACACTCTA AGATGTGTGA AACTTATATA ATTAAAGTAC GCAAATTTTC AAGTATATAT
GTGTCTTCCA TGGAAATTGA CTTGTGTTGA AATGTAGGGA GAAGACTGAA CTGAAGGCCA CAGCAGCTGA AAAAGTGGAG
CAGATAACAG CTTCACTGGG GACATCATCA TCTGATACCA TCCCGTCATC AGAAGCCTCT GACAGGATCA AATCTGGTTT
CCTTTACTTC AAGAAGGAGA AATATGAGTT AGTCATCACT ACCACCTTAT TTTCACTGCT TTAGTTTAAT CTTAAGTTTT
CTCTAATTCC TGTTATTGTT CTTCAATTAC CATCCCTCAG CAAGAACCCA GCTTTGTATG GTGAACTTGC CAAAGGCCAG
AGCCCCAAGG TACCTTTTTT TCTGATGTTT TCATGAGTTT AATTTCTACA CACAAAGTAA AAAAGATTAA ACTGTCAACT
CAGCTTATAG GTGTTGTTTT TAAAGTCAAC CAACTCATTA TATACTATAT TTAAACATAA GTAAAAAGAT TACACATAGA
TGGACTTTAA TATATAAGTG AATTCAAGCT AACTTAACTC TATTTAATGT GATTAATTAT TTGTTACAAA ATAAAAAAAT
TGTGGACTAA CTAATATTTT CTACTTTATG TGTTTGTTTT TTCAGTTTAT GGTGTTTGCT TGCTCAGACT CAAGAGTTTG
CCCCTCCCAT GTGCTAGATT TCCAACCTGG AGAGGCTTTT GTGGTCAGAA ATGTTGCTAA CATTGTCCCA CCATATGACC
AGGCATGTTT CCAACACAGC AAAAGAAATT CCTGTAAAAA CGATACTTTT GACACATAAT TTTTTTACAT TCATTTGACA
CTACTTTTTC TTACTTTTTA CTTTTTTCTT TTTCAAAAAA CTATAAAAAT TCATTCTTTT ATGACTATTT TATGCGTGTT
AGGTGTGTCA AATGAACGTA AATGTGTATG ATCTTACTAT TACTCAAACT CCTATTGACA TGTCTTAACA CAAAAGTGCT
CAAACTTACT TTGTTTTACT CTGCTGTGCA CCAGTCAAAA TACTCTGGAA CTGGGGCAGC CATTGAGTAT GCTGTTTTGC
ATCTCAAGGT ATGTTATCAA TCATTGGAAG ATAAATGACA TGCACAGAAT TTCAGGCACA GTGTTCTCTC TGTGTGTTAC
TAATATGAAA ATTAATAATG GTGAGAAAAT GTCAAGAATT TTTAATCCAT ATGATTTTTC TACAGGTGTC CAACATTGTG
GTCATTGGAC ACAGTGCTTG TGGTGGTATC AAGGGGCTTT TATCTTTCCC TTTTGATGGA ACCTACTCTA CGTAAGCCAT
TTTTCTCTGC ATAAAAATTA CACTTTCTCA ATTATAATTT GATGCACAAA TTTCACCTAC TTCTTAATTC CTAGACCATC
ATGACATTCA ACATTCCTCA TTAAACAGTG TATATGAAAA TTTTATGTTT ACCTTTCTGT ACATTTATTT AATTTACAAA
AAGTCTCACA TGACTCCATA AGAAAAATTA CTTTTGATTT GTTGTATTCA GTGATTTTAT TGAGGAGTGG GTCAAAGTTG
GCTTACCTGC AAAGGCAAAG GTGAAGACAC AGCATGGGGA TGCACCTTTT GCTGAGTTGT GCACACACTG TGAGAAGGTA
AGGAACATTA ATGCAAGCCA CATGGTTGAT AAATATTTTC ATAAAACTCA TTGAATTAAC TTGTACATAT AAGGACAAAA
CTTATATGTA GTTCAATAAG TGTTTTTTAG TACTATACAT TCTTCAGTCA GAATTAAAAT TTTACTTCAT TTATCTATGT
TAGCCTTCAG TATAAATCTT GATTATTCAA ATTAAAGTGA AATGGTTTGG CAGTTCAGAT TCTCTACTGG GTTTTTTGGT
GCTGTCCTCT GCTGAACATT AATAATATAC TGTTGTTGGT ACTTTAAAAA TCTTTATAAT ATATTTTAAG ACATCAAAAT
CAATATCAAT CAATGTATTT TGAAGACAAC ACTACTAAAT TCATGATTTA GAAGCAAACT AAAGTGATGT AGGTGATGCT
TACAAGTTAA ATTGGAATGA TGTGCAGGAA GCTGTTAATG TTTCCCTTGG AAACCTGCTA ACCTACCCAT TTGTGAGAGA
TGGCTTGGTG AACAAAACAT TGGCTCTGAA AGGAGGATAC TATGACTTTG TTAAGGGATC TTTTGAGCTC TGGAGCCTTA
ACTTTGGCCT TGCATCCTCT TTCTCCGTAT GAACATCAAC CATTATCAAT GACCTCATCT TGGTTCCCTA AGTATTCTCC
TATCTAAAAT GTACTCTGTA ATTGCCCTTG TTATATATAA CGTGCATGTG CTGAATTTCC TAATAAAAGC TGCATTGAGA
TTATCCATAG ATCACTCTCT CTCTCTCTCT CTCTCTCTCT CCTTCTCTCT CCAAATTGAA GTTCTTCAAG TAAGAAAAAT
GTAATGTTTT ATGGTCTTTC ACCACTGCAT TTTTCTTCTT TGTTAGGTTA AAGATGTGGC CACCATTCTG CATTGGAAGC
TATAGGCCAT GCTTAGAGGT CGTGTGTCTG CAATGAAGAG GCCTAGCCAC CTTTATCATA TGATATTTTA TAAATATATA
TATGAAACTA TGAACTGCGT TTATGCATGT CGGAAAATCT TCTTTTAATA GGAGTTGGAA ATCCTCTTAT GTAACAAAAT
CTTCTTTGTT CAACCTTCAT CTTTCTATAT GCACAAAATC ATGAGAGGTG AGAGAAATCA ATCTTAGTTA ATTACACTAT
TCTCTCTGTT ATAAAATAAC TTCAGTTTAA AGTTTTTAA

>Vigan.11G016600.01
CTTTCTTTTT CATTTTATCT CATAAATGCA GACCCTCATA AGAATTAACG TGAATCTCAT AGATAATATC TACAAACAAT
GTTATGGTCC ATAGCTGACA AAGTGCTAAT CAAGCACCTC ATGATCAGAA GTCAAGAAAA CCAATTTTAA TTAGTGCACA
CCGAAAATCT ATGGCCATTT TGTGTGTTTG TGAAGGTGAA TGGCAAAAGG GGTGTGTGTG ATCCAAAGTG AGAAAGGGTT
ATGGTCATTC TCTCACAGTT AATCTCCAAC ATTCAAACCT CATCTACAAG GATAGGAATG AAGCTCTCAT TTGTTTGGCT
TTCGTTTTCA TTATCTGCCA AAGGTCACAT AAAATGGGGA TACCCTATTG ACATGCCACA CCAGATTGCA TCAAAGGGCT
ATATAGCATA AAGTTTTGAG TCCTCATTGC ACCATGTCGT CCTCTTCCAT AAACGGTTGG TGCCTCTCTT CAATCTCCCC
AGCCAAAACC TCTCTTAAGA AGGCCACATT ACGACCTTCT GTCTTTGCAA CCCTCACCAC TCCTTCTTCT CCTTCGTCTT
CCTCTTCTTT CCCTTCTCTC ATTCAAGACA AGCCTGTCTT TGCTGCACCT TCCCACATCA TCACCCCAAC TGTGAGAGAG
GATATGGCAA AGGACTATGA GCAAGCTATT GAAGAACTCC AGAAATTGTT GAGGGAGAAG ACTGAACTGA AGGCCACAGC
AGCTGAAAAA GTGGAGCAGA TAACAGCTTC ACTGGGGACA TCATCATCTG ATACCATCCC GTCATCAGAA GCCTCTGACA
GGATCAAATC TGGTTTCCTT TACTTCAAGA AGGAGAAATA TGACAAGAAC CCAGCTTTGT ATGGTGAACT TGCCAAAGGC
CAGAGCCCCA AGTTTATGGT GTTTGCTTGC TCAGACTCAA GAGTTTGCCC CTCCCATGTG CTAGATTTCC AACCTGGAGA
GGCTTTTGTG GTCAGAAATG TTGCTAACAT TGTCCCACCA TATGACCAGT CAAAATACTC TGGAACTGGG GCAGCCATTG
AGTATGCTGT TTTGCATCTC AAGGTGTCCA ACATTGTGGT CATTGGACAC AGTGCTTGTG GTGGTATCAA GGGGCTTTTA
TCTTTCCCTT TTGATGGAAC CTACTCTACT GATTTTATTG AGGAGTGGGT CAAAGTTGGC TTACCTGCAA AGGCAAAGGT
GAAGACACAG CATGGGGATG CACCTTTTGC TGAGTTGTGC ACACACTGTG AGAAGGAAGC TGTTAATGTT TCCCTTGGAA
ACCTGCTAAC CTACCCATTT GTGAGAGATG GCTTGGTGAA CAAAACATTG GCTCTGAAAG GAGGATACTA TGACTTTGTT
AAGGGATCTT TTGAGCTCTG GAGCCTTAAC TTTGGCCTTG CATCCTCTTT CTCCGTATGA ACATCAACCA TTATCAATGA
CCTCATCTTG GTTCCCTAAG TATTCTCCTA TCTAAAATGT ACTCTGTAAT TGCCCTTGTT ATATATAACG TGCATGTGCT
GAATTTCCTA ATAAAAGCTG CATTGAGATT ATCCATAGAT CACTCTCTCT CTCTCTCTCT CTCTCTCTCC TTCTCTCTCC
AAATTGAAGT TCTTCAAGTA AGAAAAATGT AATGTTTTAT GGTCTTTCAC CACTGCATTT TTCTTCTTTG TTAGGTTAAA
GATGTGGCCA CCATTCTGCA TTGGAAGCTA TAGGCCATGC TTAGAGGTCG TGTGTCTGCA ATGAAGAGGC CTAGCCACCT
TTATCATATG ATATTTTATA AATATATATA TGAAACTATG AACTGCGTTT ATGCATGTCG GAAAATCTTC TTTTAATAGG
AGTTGGAAAT CCTCTTATGT AACAAAATCT TCTTTGTTCA ACCTTCATCT TTCTATATGC ACAAAATCAT GAGAGGTGAG
AGAAATCAAT CTTAGTTAAT TACACTATTC TCTCTGTTAT AAAATAACTT CAGTTTAAAG TTTTTAA

>Vigan.11G016600.01
ATGTCGTCCT CTTCCATAAA CGGTTGGTGC CTCTCTTCAA TCTCCCCAGC CAAAACCTCT CTTAAGAAGG CCACATTACG
ACCTTCTGTC TTTGCAACCC TCACCACTCC TTCTTCTCCT TCGTCTTCCT CTTCTTTCCC TTCTCTCATT CAAGACAAGC
CTGTCTTTGC TGCACCTTCC CACATCATCA CCCCAACTGT GAGAGAGGAT ATGGCAAAGG ACTATGAGCA AGCTATTGAA
GAACTCCAGA AATTGTTGAG GGAGAAGACT GAACTGAAGG CCACAGCAGC TGAAAAAGTG GAGCAGATAA CAGCTTCACT
GGGGACATCA TCATCTGATA CCATCCCGTC ATCAGAAGCC TCTGACAGGA TCAAATCTGG TTTCCTTTAC TTCAAGAAGG
AGAAATATGA CAAGAACCCA GCTTTGTATG GTGAACTTGC CAAAGGCCAG AGCCCCAAGT TTATGGTGTT TGCTTGCTCA
GACTCAAGAG TTTGCCCCTC CCATGTGCTA GATTTCCAAC CTGGAGAGGC TTTTGTGGTC AGAAATGTTG CTAACATTGT
CCCACCATAT GACCAGTCAA AATACTCTGG AACTGGGGCA GCCATTGAGT ATGCTGTTTT GCATCTCAAG GTGTCCAACA
TTGTGGTCAT TGGACACAGT GCTTGTGGTG GTATCAAGGG GCTTTTATCT TTCCCTTTTG ATGGAACCTA CTCTACTGAT
TTTATTGAGG AGTGGGTCAA AGTTGGCTTA CCTGCAAAGG CAAAGGTGAA GACACAGCAT GGGGATGCAC CTTTTGCTGA
GTTGTGCACA CACTGTGAGA AGGAAGCTGT TAATGTTTCC CTTGGAAACC TGCTAACCTA CCCATTTGTG AGAGATGGCT
TGGTGAACAA AACATTGGCT CTGAAAGGAG GATACTATGA CTTTGTTAAG GGATCTTTTG AGCTCTGGAG CCTTAACTTT
GGCCTTGCAT CCTCTTTCTC CGTATGA

>Vigan.11G016600.01
MSSSSINGWC LSSISPAKTS LKKATLRPSV FATLTTPSSP SSSSSFPSLI QDKPVFAAPS HIITPTVRED MAKDYEQAIE
ELQKLLREKT ELKATAAEKV EQITASLGTS SSDTIPSSEA SDRIKSGFLY FKKEKYDKNP ALYGELAKGQ SPKFMVFACS
DSRVCPSHVL DFQPGEAFVV RNVANIVPPY DQSKYSGTGA AIEYAVLHLK VSNIVVIGHS ACGGIKGLLS FPFDGTYSTD
FIEEWVKVGL PAKAKVKTQH GDAPFAELCT HCEKEAVNVS LGNLLTYPFV RDGLVNKTLA LKGGYYDFVK GSFELWSLNF
GLASSFSV*