GBrowse Details

Vigan.11G011400.01

Basic Information:
Name: Vigan.11G011400.01
Multiple alignment
Variant Information
Position: Chr11:1140441..1142612 (+ strand)
Length: 2172
Functional Information:
Description: Similar to Uncharacterized protein. [M4EDC8, Brassica rapa subsp. pekinensis]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.04,28.36,11.24,11.64,12.28,14.15,10.13,11.11
Arabidopsis thaliana homolog: AT1G14990.2
Automatic updates:
Name: NM_001248389 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306456 (LOC100306456), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:1140441..1140865 (+ strand)
Length: 425
Type: five_prime_UTR
Position: Chr11:1140866..1141066 (+ strand)
Length: 201
Type: CDS
Position: Chr11:1141158..1141274 (+ strand)
Length: 117
Type: CDS
Position: Chr11:1142232..1142282 (+ strand)
Length: 51
Type: CDS
Position: Chr11:1142283..1142612 (+ strand)
Length: 330
Type: three_prime_UTR

>Vigan.11G011400.01 class=Sequence position=Chr11:1140441..1142612 (+ strand)
CACCAGTTGC TCTAGGGATA CAAGAATGAT TGACAGACTG CACTTTCTTT CGGTGAGTGG CCGGTGGGGT GGGAGGTTTC
TGCCGTGTAA GAGAGGTTTT CTTTGATTTT TGCAATTCCT GGTTAAATTT ATCTTTTTTA TCCTTCTTGC ACCATTTATG
CTTTTTTACT CTGTATTTTA CGATTTCTGC GTCTTCATTC CTGAACTTGT TATAGACTTC TTTTATGCTG TTCTAGTGAT
TAGATAGGTT ACTTGTTGAA ATCTGTTTGT AGTTTTCTTT GAATTGCTTG TGTGCCATAA GTTAATAGGA ATTTATGCTT
AACCTTTTAG TTGTTTCCCT CTCATGAATA TAATTTTTGA GATCCTTTTT CATATTTGCT AATATAATAA TAATAATAAT
TGTTGTTTAC TTAGAACAAC TCGCCATGAG GATCTATGAA AAGTTAAGAG AGATAGTGAA GATTCAAAAG TTCCGCAGAT
TGGTGTCATA TACTGGGTTT TACTGTTTTG CCACACTCAT AAGCTACGCT TATGTCAACA ATACGACAAG AGCTGGTTAC
TCTAGAGCCG ATCAATTCTA TGCATCATAC CCTGCTGGTA CCGAGCTTTT GACGGACACT ACCAAGGTAT TTTCTTTTGT
ATGATGTAAT CAATTTGAAG ATTAGAGCAT ATTATTTTGA CCTAAAGTGT GATTTTGGTG TTTGAAATTT GGTTCAGTTG
TACAAAGCTG CTCTTGAAAA CTGCTTTGAA GCTGAAGAGT GGGGTCCGTT TGAGTTCTGC ATCATGGCAA AACACTTTAA
TCGTCAAGGG AATTCGCCAT ATGCTTATCA TGCGGTATGA TGCCAAACGG CGGGTTATTA ATTGCATTAA TGTTGCTGGA
AAGAAAAGGA TACTTAGTCC ATTGGGGTTT TGATTTTTTA ATGAAATGTT GGGAGAAAAT ATTGTATAGG ATTATTGGCC
CACCCCTTTG TAAGTGGTGA ACAGTGGAAT GATTTCTGAA TTGTGAGAGT GACATAGAGT GGTCTTCTCT TGAATGACAT
GGAGGTCCTT GATTAGAAAA TTTTGAAAAA ATTCTATAAA AACTGTCTTC TGATATGATC ATTTCTACAT GTGAGATAAG
TAGAAGTTCT GTTTGCTGGG TTTGATGTAT TTCTAAACTT TTCTTCTAGT GTGTCAAAGG AAGATCCTGA AGTTTTTACC
TGTTATATGC TAGGGGCAAG GCTTAAAAAA AAAACTCTTT GATGACAATT TTGACTGCAA CATAAGGTTT TTGGAGTTTT
TGTGACTGCA GCAGTTTCAA TTGCATTTTT GTAATTTCCT GCAATATCAA GAAGTGCAAT AAAACTATGA CTGCAATTAA
AATCTTGGGT AGGGACAAAT CTAGTTTCGA GAAACTGAGG ATGATAAGCA CTGTTTCCGT GTATTTCTCA TGACCTGAAA
CTAGTTTAAA ACTGTAGTAT AATGCCCAGG TTGATGACTT TCTCAGTCAA AGTAGACAGA CCTTCATTTG GCAGGAGGAA
TTTTTCTCTA CGTTTTGTAT AATCAAGCAA TAACAGATAT GGAAGAACTG ATACAAATAT TTTTCATAAT TGATCTTGCT
GAAAGCTATG ACTAATAAAT TTATCAAACA TTAATAGAAT ACTGTTATTT TATTTTTTGG ATAAAATCTT ACATAAAATT
TCAACCATGC TTCTGTGTTT GTTTAATTTT GTTACATTGT TCCGTTTCTT TTGGATCTCT ACAGTGTTTA TGGAATTAAC
AAAAGAATAT GACGTGTTTG GCTTCTTTCA GCAATACTTG GCACACCTCC TTTCTCTTGG ACAACTTGAT GGAAGTGGTT
GATCAGAGTG ATTTACATAT AAACTATGAT GAAGTATGAC AGTAGAAACT TTTGCAATAT ATGAAGACAT GTAAAGACAA
ATGAGAAAAC AATGAGGTTT GAGTACTTAC TGAGATTTGA ACTCCCTGTG CATTCTACAG CACTCTTAGG AATAAGGAAC
AAAATATGTG TAGCATTTTG TCTCTTTCGG GTAGGGTAAC AACAGATACT CAGCTTTCTT CCTGTTCTTT GATATTCAAA
CTCAATCAGT CTCAAATGTT TCTGATTGAG TTGTTTACAG TACTAATTGT CTAATGCTAT CCTAATTAAG ACTATTTTAA
TAAATGTTGG CA

>Vigan.11G011400.01
CACCAGTTGC TCTAGGGATA CAAGAATGAT TGACAGACTG CACTTTCTTT CGGTGAGTGG CCGGTGGGGT GGGAGGTTTC
TGCCGTGTAA GAGAGGTTTT CTTTGATTTT TGCAATTCCT GGTTAAATTT ATCTTTTTTA TCCTTCTTGC ACCATTTATG
CTTTTTTACT CTGTATTTTA CGATTTCTGC GTCTTCATTC CTGAACTTGT TATAGACTTC TTTTATGCTG TTCTAGTGAT
TAGATAGGTT ACTTGTTGAA ATCTGTTTGT AGTTTTCTTT GAATTGCTTG TGTGCCATAA GTTAATAGGA ATTTATGCTT
AACCTTTTAG TTGTTTCCCT CTCATGAATA TAATTTTTGA GATCCTTTTT CATATTTGCT AATATAATAA TAATAATAAT
TGTTGTTTAC TTAGAACAAC TCGCCATGAG GATCTATGAA AAGTTAAGAG AGATAGTGAA GATTCAAAAG TTCCGCAGAT
TGGTGTCATA TACTGGGTTT TACTGTTTTG CCACACTCAT AAGCTACGCT TATGTCAACA ATACGACAAG AGCTGGTTAC
TCTAGAGCCG ATCAATTCTA TGCATCATAC CCTGCTGGTA CCGAGCTTTT GACGGACACT ACCAAGTTGT ACAAAGCTGC
TCTTGAAAAC TGCTTTGAAG CTGAAGAGTG GGGTCCGTTT GAGTTCTGCA TCATGGCAAA ACACTTTAAT CGTCAAGGGA
ATTCGCCATA TGCTTATCAT GCGCAATACT TGGCACACCT CCTTTCTCTT GGACAACTTG ATGGAAGTGG TTGATCAGAG
TGATTTACAT ATAAACTATG ATGAAGTATG ACAGTAGAAA CTTTTGCAAT ATATGAAGAC ATGTAAAGAC AAATGAGAAA
ACAATGAGGT TTGAGTACTT ACTGAGATTT GAACTCCCTG TGCATTCTAC AGCACTCTTA GGAATAAGGA ACAAAATATG
TGTAGCATTT TGTCTCTTTC GGGTAGGGTA ACAACAGATA CTCAGCTTTC TTCCTGTTCT TTGATATTCA AACTCAATCA
GTCTCAAATG TTTCTGATTG AGTTGTTTAC AGTACTAATT GTCTAATGCT ATCCTAATTA AGACTATTTT AATAAATGTT
GGCA

>Vigan.11G011400.01
ATGAGGATCT ATGAAAAGTT AAGAGAGATA GTGAAGATTC AAAAGTTCCG CAGATTGGTG TCATATACTG GGTTTTACTG
TTTTGCCACA CTCATAAGCT ACGCTTATGT CAACAATACG ACAAGAGCTG GTTACTCTAG AGCCGATCAA TTCTATGCAT
CATACCCTGC TGGTACCGAG CTTTTGACGG ACACTACCAA GTTGTACAAA GCTGCTCTTG AAAACTGCTT TGAAGCTGAA
GAGTGGGGTC CGTTTGAGTT CTGCATCATG GCAAAACACT TTAATCGTCA AGGGAATTCG CCATATGCTT ATCATGCGCA
ATACTTGGCA CACCTCCTTT CTCTTGGACA ACTTGATGGA AGTGGTTGA

>Vigan.11G011400.01
MRIYEKLREI VKIQKFRRLV SYTGFYCFAT LISYAYVNNT TRAGYSRADQ FYASYPAGTE LLTDTTKLYK AALENCFEAE
EWGPFEFCIM AKHFNRQGNS PYAYHAQYLA HLLSLGQLDG SG*