Variant information

Chr11:1140441 - 1142612

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
1140473AG431806.771.00UPSTREAM(|4578||None|Vigan.11G011500.01), UPSTREAM(|839||None|Vigan.11G011300.01), UTR_5_PRIME(|393||None|Vigan.11G011400.01)Vigna nepalensis
1140592CT712890.771.00UPSTREAM(|4459||None|Vigan.11G011500.01), UPSTREAM(|958||None|Vigan.11G011300.01), UTR_5_PRIME(|274||None|Vigan.11G011400.01)Vigna nepalensis
1140635TG732837.771.00START_GAINED(|||None|Vigan.11G011400.01), UPSTREAM(|1001||None|Vigan.11G011300.01), UPSTREAM(|4416||None|Vigan.11G011500.01), UTR_5_PRIME(|231||None|Vigan.11G011400.01)Vigna nepalensis
1140730GT682760.771.00START_GAINED(|||None|Vigan.11G011400.01), UPSTREAM(|1096||None|Vigan.11G011300.01), UPSTREAM(|4321||None|Vigan.11G011500.01), UTR_5_PRIME(|136||None|Vigan.11G011400.01)Vigna nepalensis
1140783CG702913.771.00START_GAINED(|||None|Vigan.11G011400.01), UPSTREAM(|1149||None|Vigan.11G011300.01), UPSTREAM(|4268||None|Vigan.11G011500.01), UTR_5_PRIME(|83||None|Vigan.11G011400.01)Vigna nepalensis
1140946TC391691.771.00SYNONYMOUS_CODING(SILENT|tgT/tgC|C27|None|Vigan.11G011400.01), UPSTREAM(|1312||None|Vigan.11G011300.01), UPSTREAM(|4105||None|Vigan.11G011500.01)Vigna nepalensis
1140949TC391730.771.00SYNONYMOUS_CODING(SILENT|ttT/ttC|F28|None|Vigan.11G011400.01), UPSTREAM(|1315||None|Vigan.11G011300.01), UPSTREAM(|4102||None|Vigan.11G011500.01)Vigna nepalensis
1141288CG532392.771.00INTRON(|||None|Vigan.11G011400.01), UPSTREAM(|1654||None|Vigan.11G011300.01), UPSTREAM(|3763||None|Vigan.11G011500.01)Vigna nepalensis
1141293GT552460.771.00INTRON(|||None|Vigan.11G011400.01), UPSTREAM(|1659||None|Vigan.11G011300.01), UPSTREAM(|3758||None|Vigan.11G011500.01)Vigna nepalensis
1141319GA602388.771.00INTRON(|||None|Vigan.11G011400.01), UPSTREAM(|1685||None|Vigan.11G011300.01), UPSTREAM(|3732||None|Vigan.11G011500.01)Vigna nepalensis
1141332AT562143.771.00INTRON(|||None|Vigan.11G011400.01), UPSTREAM(|1698||None|Vigan.11G011300.01), UPSTREAM(|3719||None|Vigan.11G011500.01)Vigna nepalensis
1141344GT542411.771.00INTRON(|||None|Vigan.11G011400.01), UPSTREAM(|1710||None|Vigan.11G011300.01), UPSTREAM(|3707||None|Vigan.11G011500.01)Vigna nepalensis
1141353AC562535.771.00INTRON(|||None|Vigan.11G011400.01), UPSTREAM(|1719||None|Vigan.11G011300.01), UPSTREAM(|3698||None|Vigan.11G011500.01)Vigna nepalensis
1141362TG612667.771.00INTRON(|||None|Vigan.11G011400.01), UPSTREAM(|1728||None|Vigan.11G011300.01), UPSTREAM(|3689||None|Vigan.11G011500.01)Vigna nepalensis
1141385TC572269.771.00INTRON(|||None|Vigan.11G011400.01), UPSTREAM(|1751||None|Vigan.11G011300.01), UPSTREAM(|3666||None|Vigan.11G011500.01)Vigna nepalensis
1141397GC542178.771.00INTRON(|||None|Vigan.11G011400.01), UPSTREAM(|1763||None|Vigan.11G011300.01), UPSTREAM(|3654||None|Vigan.11G011500.01)Vigna nepalensis
1141809GT612319.771.00INTRON(|||None|Vigan.11G011400.01), UPSTREAM(|2175||None|Vigan.11G011300.01), UPSTREAM(|3242||None|Vigan.11G011500.01)Vigna nepalensis
1141840GA552232.771.00INTRON(|||None|Vigan.11G011400.01), UPSTREAM(|2206||None|Vigan.11G011300.01), UPSTREAM(|3211||None|Vigan.11G011500.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
1140546AAT561774.731.00UPSTREAM(|4504||None|Vigan.11G011500.01), UPSTREAM(|913||None|Vigan.11G011300.01), UTR_5_PRIME(|319||None|Vigan.11G011400.01)Vigna nepalensis
1140823TTATA522285.731.00UPSTREAM(|1190||None|Vigan.11G011300.01), UPSTREAM(|4227||None|Vigan.11G011500.01), UTR_5_PRIME(|42||None|Vigan.11G011400.01)Vigna nepalensis
1141664TTA431210.730.98INTRON(|||None|Vigan.11G011400.01), UPSTREAM(|2031||None|Vigan.11G011300.01), UPSTREAM(|3386||None|Vigan.11G011500.01)Vigna nepalensis