VIGGS:GBrowse

Vigan.10G243500.01

Basic Information:

Name:	Vigan.10G243500.01 Multiple alignment Variant Information
Position:	Chr10:28406732..28408672 (- strand)
Length:	1941

Functional Information:

Description:	Similar to uncharacterized GPI-anchored protein At3g06035-like. [XP_004511342.1, Cicer arietinum]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,19.47,1.80,7.27,22.30,18.15,15.90
Arabidopsis thaliana homolog:	AT3G06035.1

Automatic updates:

Name:	NM_001251787 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306685 (LOC100306685), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001254680 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100814074 (LOC100814074), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:28406732..28407104 (- strand)
Length:	373
Type:	three_prime_UTR

Position:	Chr10:28407105..28407613 (- strand)
Length:	509
Type:	CDS

Position:	Chr10:28408487..28408571 (- strand)
Length:	85
Type:	CDS

Position:	Chr10:28408572..28408672 (- strand)
Length:	101
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.10G243500.01 class=Sequence position=Chr10:28406732..28408672 (- strand)
CTTTTACTTA ACAAGGAAAC AGAAGAGATT CTTCACCATT TCAACTCTCT CTCTCTCTCT CTCTCTTTCT CTCTCTCTCC
GTGCTTTTCA AATTACAAAC AATGGCGTTA GTTCGCTTCC CTCTGATTTT CACACTCATC CTTTCTTCCA TTCTCTTGTC
GAATCACTCA GTAAAATGCG ACCACGGTCA GTACTATAAT GCTCTCAATT TTTCCAGCTC TTGTTTTTCT GCTTACCCTC
AAATGGGTTT CTCTCGTTAT TCTCAAACAT CTATTGTATG AGTATTTTCT CTAACTGTCT TTTACTGAAT TTTCTTAACT
ATCATAAAGT TTACGATTTT AAGCGTTTTC TCTCTGGGTA TATGTTTTTA TCTGTCCTTA TTTTTCACCC TTTTCTTGTG
CCTGAGTTTC TCAATGGACA GTCTTAGATC TGTATGGGAG AACGATTGAT CTGACATCAC CGAATCGTTA GGGGTAGTTT
ATATATTCTT TCTACATTGA CCTTGAAAAG ATCTGCTCAT TTGAGTTGGT ACCTACTGAA TAACGAAATT TGAAATTGCA
TAATGCGGTT GCTTGTCAAT GCAGAATGAT TTGAATTTTT ATATTCTGAT TTATGGATCA GTAGGTTGAC TAGATGGTCA
TTGAGTAGCT TAATCGTTTG CTACCATAGG GTTCCATGTT ACTAGTGATG AGGTTTTTCA TTAATCTTGT CGGTAAAGCT
TTCTGCGGTT GCTGCTGAAG GTCAGGAAAT CTTCTTCCAC ACAATTCACG TATAATGGAA GGAATTAAAA GAACATGTAA
ATCGAAGAGC TATATTTCAT ATAGATTTGA ATGCAACTTA TATAAATACA GGATTATACC ATGTTATAGA ATCTATGTTA
TAGAAGTTGA ATTAGATTTG TGTTATATAA AACAATAATT TTTAGATATT TGAATGCCTT AGTCTTCAAT GTAGTTTGTG
TTATAGAGTT GAATTAGATT TAAAGTACAT AACACCAAAC ATCCACACAC ACACTGAAGT TTACATTTTG AGGTTGCACT
GATCTTAATC CACTTGCAGG TGAGGAGGAT GATCTTTATC AGGAAATCAA CAACTATAGG AAAACTTTAA ACTTGACATC
TCTGACAAAG AATGAAAATG CAAATTGCTT TGCTGATGAA ATGGCTGACC AGTTCAAGAA TCAACCTTGT ACAAATACCA
CAGGTGCTAA CACAGTCCCA GGTACAGAGC CTCGGTTCTC CAACTACCCA GACCTTTTAA ACAAATGTCA CTTGAATATT
TCTAACACAA GGGATGGAGC TGTAATGCCT GTTTGTGTTC CTGGCCTGGT TTCAAGCGTT GTCCTTACAA ATTTCACACA
ATCTCTCTAC TCTGGTAATC TCAACGACTC CAAGTTTACA GGAATTGGTA TTGGTTCAGA AGATAACTGG ATTGTAGTCG
TACTGACCAC AAACACTCCC GAAGGAAGCT TTGTTCCTGA TACTTCTAAT GGTGCTAATT TGATTTCTAA ATTTGGTTTG
ATTTACTGCT CAATTTTCCT ATTAGTCGGT AACTTTTTCC TGTTGTAAAC AAGAGGATGC CACTGTTCCC GTTTTTTTCA
GTATTGTCAA TTTGGAGGCA TTGTACTAAT CTGTGTCTGG AGAAACTGAA AATAATGTAG AAAGGTGCTT TTCTAGTGAA
ACAGACAGCG GTTCAGGTTA AGTGTTGTAT GAATACTGCA AATGTCTGTA GGATGCTAGC GAAGAGGAAT AGGGGGAACA
GCATTTTTAG ACCAGGGTTG TTGTATTACT CTTACCATAA TCAACATATT GTTTTTCTTT CCTTTCGTTC TGTTTTTGAA
TGCTTTACAT TTGCCAAATC CGAATAGGAG GCAATAAACT GTAGCATTGA TGAGCACACC AGTGCTTTGG TTTCGAAATG
GAAATTCTGT TGCTTATTTG A

[show][hide][copy]TRANSCRIPT

>Vigan.10G243500.01
CTTTTACTTA ACAAGGAAAC AGAAGAGATT CTTCACCATT TCAACTCTCT CTCTCTCTCT CTCTCTTTCT CTCTCTCTCC
GTGCTTTTCA AATTACAAAC AATGGCGTTA GTTCGCTTCC CTCTGATTTT CACACTCATC CTTTCTTCCA TTCTCTTGTC
GAATCACTCA GTAAAATGCG ACCACGGTGA GGAGGATGAT CTTTATCAGG AAATCAACAA CTATAGGAAA ACTTTAAACT
TGACATCTCT GACAAAGAAT GAAAATGCAA ATTGCTTTGC TGATGAAATG GCTGACCAGT TCAAGAATCA ACCTTGTACA
AATACCACAG GTGCTAACAC AGTCCCAGGT ACAGAGCCTC GGTTCTCCAA CTACCCAGAC CTTTTAAACA AATGTCACTT
GAATATTTCT AACACAAGGG ATGGAGCTGT AATGCCTGTT TGTGTTCCTG GCCTGGTTTC AAGCGTTGTC CTTACAAATT
TCACACAATC TCTCTACTCT GGTAATCTCA ACGACTCCAA GTTTACAGGA ATTGGTATTG GTTCAGAAGA TAACTGGATT
GTAGTCGTAC TGACCACAAA CACTCCCGAA GGAAGCTTTG TTCCTGATAC TTCTAATGGT GCTAATTTGA TTTCTAAATT
TGGTTTGATT TACTGCTCAA TTTTCCTATT AGTCGGTAAC TTTTTCCTGT TGTAAACAAG AGGATGCCAC TGTTCCCGTT
TTTTTCAGTA TTGTCAATTT GGAGGCATTG TACTAATCTG TGTCTGGAGA AACTGAAAAT AATGTAGAAA GGTGCTTTTC
TAGTGAAACA GACAGCGGTT CAGGTTAAGT GTTGTATGAA TACTGCAAAT GTCTGTAGGA TGCTAGCGAA GAGGAATAGG
GGGAACAGCA TTTTTAGACC AGGGTTGTTG TATTACTCTT ACCATAATCA ACATATTGTT TTTCTTTCCT TTCGTTCTGT
TTTTGAATGC TTTACATTTG CCAAATCCGA ATAGGAGGCA ATAAACTGTA GCATTGATGA GCACACCAGT GCTTTGGTTT
CGAAATGGAA ATTCTGTTGC TTATTTGA

[show][hide][copy]CDS

>Vigan.10G243500.01
ATGGCGTTAG TTCGCTTCCC TCTGATTTTC ACACTCATCC TTTCTTCCAT TCTCTTGTCG AATCACTCAG TAAAATGCGA
CCACGGTGAG GAGGATGATC TTTATCAGGA AATCAACAAC TATAGGAAAA CTTTAAACTT GACATCTCTG ACAAAGAATG
AAAATGCAAA TTGCTTTGCT GATGAAATGG CTGACCAGTT CAAGAATCAA CCTTGTACAA ATACCACAGG TGCTAACACA
GTCCCAGGTA CAGAGCCTCG GTTCTCCAAC TACCCAGACC TTTTAAACAA ATGTCACTTG AATATTTCTA ACACAAGGGA
TGGAGCTGTA ATGCCTGTTT GTGTTCCTGG CCTGGTTTCA AGCGTTGTCC TTACAAATTT CACACAATCT CTCTACTCTG
GTAATCTCAA CGACTCCAAG TTTACAGGAA TTGGTATTGG TTCAGAAGAT AACTGGATTG TAGTCGTACT GACCACAAAC
ACTCCCGAAG GAAGCTTTGT TCCTGATACT TCTAATGGTG CTAATTTGAT TTCTAAATTT GGTTTGATTT ACTGCTCAAT
TTTCCTATTA GTCGGTAACT TTTTCCTGTT GTAA

[show][hide][copy]PROTEIN

>Vigan.10G243500.01
MALVRFPLIF TLILSSILLS NHSVKCDHGE EDDLYQEINN YRKTLNLTSL TKNENANCFA DEMADQFKNQ PCTNTTGANT
VPGTEPRFSN YPDLLNKCHL NISNTRDGAV MPVCVPGLVS SVVLTNFTQS LYSGNLNDSK FTGIGIGSED NWIVVVLTTN
TPEGSFVPDT SNGANLISKF GLIYCSIFLL VGNFFLL*