GBrowse Details

Vigan.10G235100.01

Basic Information:
Name: Vigan.10G235100.01
Multiple alignment
Variant Information
Position: Chr10:27764702..27768262 (- strand)
Length: 3561
Functional Information:
Description: Similar to 4-coumarate:coenzyme A ligase 1. [U3PLI8, Phaseolus vulgaris]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: catalytic activity (GO:0003824)
InterPro: AMP-dependent synthetase/ligase (IPR000873)
AMP-binding, conserved site (IPR020845)
AMP-binding enzyme C-terminal domain (IPR025110)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.27,0.22,12.82,68.22,32.64,13.07,42.62,14.70
Arabidopsis thaliana homolog: AT1G51680.1, AT1G65060.1, AT3G21230.1, AT3G21240.1
Automatic updates:
Name: NM_001249307 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 4-coumarate:Coenzyme A ligase isoenzyme 4 (4CL4), mRNA.
PubMed ID: 8278545 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:27764702..27764970 (- strand)
Length: 269
Type: three_prime_UTR
Position: Chr10:27764971..27765108 (- strand)
Length: 138
Type: CDS
Position: Chr10:27765221..27765323 (- strand)
Length: 103
Type: CDS
Position: Chr10:27765407..27765620 (- strand)
Length: 214
Type: CDS
Position: Chr10:27765821..27766019 (- strand)
Length: 199
Type: CDS
Position: Chr10:27766858..27767925 (- strand)
Length: 1068
Type: CDS
Position: Chr10:27767926..27768262 (- strand)
Length: 337
Type: five_prime_UTR

>Vigan.10G235100.01 class=Sequence position=Chr10:27764702..27768262 (- strand)
TTGGGTGAGG CATGGAATTG AAAATTGAAT AGAATAGTTT TGGTAGAGAA TCCACAAAGG TAGGCTGAAA GAAAATGACA
GAAAAGGGGG TAGGTAGGTA AGTAAGAGTG GCTGGAAGAA GAACGCTTGT TCTCAAAACG TGATCCAATG CGTGGCTGCC
CCTTCTCCAT CTACTGATTC ATTCATTCAT TCATTCATTC ATTCATTCAT TCATTCTCAC CTAACACCCT TCCCCTTCCC
TATATTACTT CATTCTCATA TTTCCTTCTG CATCACTCTT TCTCTCTCTC TGTCTTTATC TCTTCCCACC ATAGTAACCT
TTCAATCCAA CAACACCATG TTAAGTGTAG CTCCTTCTGT TGATACCAAT ACTACCAAAG AGATGCCTGC AGCAAAAACA
GAGCAGAACC AAATTCCTCA GACTACCCAT GTATTCAAAT CAAAATTACC AGACATACCA ATCTCCAACC ACATGCCCCT
CCATGCCTAC TGCTTCCAAA ACCTCTCCAA ATTCGCCGAC CGTCCTTGCC TCATCGTCGG CTCCGCCGCC AAAACCTACA
CTTACGCAGA GACTCACCTT ATATCACGCA AGATTGCAGC CGGATTCTCG AACCTCGGCA TCCGAAAGGG CGACGTCGTC
ATGATCCTCC TCCAGAACTC CGCCGAGTTC GTCCTCTCCT TCCTCGCCGC CTCCATGATC GGTGCCGTTG CCACCACCGC
CAACCCGTTC TACACCGCCG CCGAGATCTT CAAGCAGTTC AGCGCCTCCA AGGCGAAGCT CATCATAACT CAGGCAATGT
ACGTTGACAA GCTCCGCAAC CACGACGGCG GATGGAGCCT CGGCGAGGAC TTCAAGGTCG TGACCGTGGA CGATCCGCCG
GAGAATTGCC TCCACTTCTC GGTACTCTCG GAGGCGAACG AGAACGACGT TCCGGAGGTG GAGATCCATC CGGACGATGC
GGTGGCGCTT CCGTTCTCCT CCGGCACCAC GGGGTTACCG AAAGGAGTGA TTCTGACTCA CAAGAGTTTA ACCACGAGCG
TGGCGCAACA GGTGGACGGG GAGAACCCTA ACCTCTACCT CACTACCGAG GACGTACTCC TCTGCGTGCT CCCGCTCTTT
CACATATTCT CGCTCAACAG TGTGCTGTTA TGCGCGCTGA GAGCCGGGAG TGGCGTTTTG CTGATGCAGA AGTTCGAGAT
TGGGACGCTG CTGGAGCTCA TACAGCGCTA CCGCGTGTCG GTGGCCATGG TGGTGCCTCC CTTGGTGCTG GCGCTGGCAA
AGAATCCGAT GGTCGCGAAT TTTGATCTCA GTTCAATACG GTTAGTTCTC TCCGGTGCCG CTCCCTTGGG TAAGGAGCTC
GAAGACGCCC TCCACAGCAG GGTGCCTCAC GCTGTTTTGG GACAGGTAAC TAATTACCGT ACACATTCCC TTAATTTTAT
TAATTATTAT AATTATTATG GACGTAAAAC TCTAATTCTA GCATTATAAA AAAATAAATA AATAAAAATT AACGTAAAAG
TTATAAGAAG ACAAAGGATC ATGTGGATAT ATAATAATAA TAACATTTAA TTATGCCACC CATATTTTCC GCGGGTACTT
ATTTCTTATA AAGCTTTTGC ATGCGATGAT AATTACGAAT GGTCACACCA AAGAGAAGGA AATATATTTG GAGCATGTGA
GGATACCTTA AACACTTGTT ATTGATACAT ACATATATTG AGTAGTACAG ATAGATCAAT AAATTTTATA ACTAGCTGTG
ATATAATTAT AATAAGGAGG AGAGTATTTA TTATTAAGAA TATATATACG TCTAAATAAA TGATTAAGAT AAAATAATCA
GGGTTTTTAC TCGATTAAAA AATAAATATA GTATGTGCAT GACAACCGGT CATGCATTAT TTCAAATGCA GCTCACCGCA
CCAACCCCCA AAATAGTGTG AAATAGGTAC ACAAGCTTCC ACACAAGACT TTTAGTGTCG TGTCATGTTT GATTTGGTCA
ATGACGTAAG CCAAACAAAC AATAGACCAG TCAAAAATTC ACTGCCACCT CGGTTTACGC CACTCCACTG CAACCCAATT
CCTTTAATTT TAAACATTTT CATAATAATA ATAGTAATAA CAACAAGAAA ACTAACTTAT CTTACCAAAT TAAATTTACC
ATTAAATTTA TAATATACTC CATTTTTTAA TAATTTAATA AATAAACAAC AAAATTGTAA AGTGGGGACG TGGTGTATTA
CAGGGTTACG GGATGACAGA AGCAGGGCCA GTCCTTTCCA TGTGCTTGGG CTTTGCAAAA CAACCATTCC CAACAAAATC
GGGATCTTGT GGAACCGTTG TCAGAAATGC AGAGCTAAAG GTGGTTGACC CTGAAACTGG TCGTTCTCTT GGCTACAATC
AACCCGGTGA AATTTGCATC CGAGGGCTAC AGATCATGAA AGGTATATAT ATATATATAT ATATATATAT ATATATATAT
ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATAATA
ATATTCCTTG CGTTTTTCTA TTTATTAATT TTTTTTTTCA AGTGTTAATT GGCTTACTGA CACTCAAATT CATATACGTC
AGGATATCTG AACGACGACC AAGCGACGGC ATCGACCATC GACGCAGAGG GTTGGCTTCA CACCGGTGAT GTTGGCTATG
TAGATGATGA TGACGAAATT TTCATTGTTG ACAGGGTGAA AGAACTCATT AAGTTTAAAG GCTTCCAGGT GCCCCCTGCA
GAACTCGAAG GGCTTCTTGT AAGCCATCCC TCCATTGCAG ACGCCGCAGT TGTCCCGTAA GCTTCTTAAT CTTCTGCATT
TTAACGGCTC ACTACATATA GTACAGATCA CTGAACTTTC ATTTTATCGA TGTTAACAGA CAAAAGGATG TTGTTGCCGG
TGAACTTCCC GTTGCTTTCG TTGTCAGATC TAACGGCTTT GATCTAACAG AAGAGGCTGT GAAAGAGTAT ATAGCTAAAC
AGGTATGCGG CATTGAAAAT AATTGTGTGT TAATATATAA AACCTAACTT CATTTACATG ATCATGTCGT TGAAGTGCAT
GCATAAATTT GAAGATGGTT TTGATTATGA ACAGGTGGTG TTTTACAAAA GACTGCACAA AGTTTATTTT GTTCATGCTA
TTCCCAAGTC TCCGTCGGGG AAGATATTAA GGAAAGATCT GAGAGCAAAG CTTGAAGCAG CCGCCGCCGC CGCCGTCACT
CCGACGCCTT AAGGCCAGAA TCTGCCTCTT TTTTTGACGA GTTTTTCAGA TTTTTTTTTT AAATTATTGA TTTGACACGT
GTAATTTACG TGTGAATGCT TGAAGCATAA AGTGAATCCG AGAAGCAGTT GCACTTGCAT ATAATCACTG TATTCTCATG
TCCATTACCT GAGCTTCTCC GGTATTGTAA TTTTAGATAA CTGTTTCGGT TCTTATATAT TCATGTTATC AGATCTTGCT
ATCCTTTTTC TGCATTCCTT TCGCTAGAGA TTTTTTATAT T

>Vigan.10G235100.01
TTGGGTGAGG CATGGAATTG AAAATTGAAT AGAATAGTTT TGGTAGAGAA TCCACAAAGG TAGGCTGAAA GAAAATGACA
GAAAAGGGGG TAGGTAGGTA AGTAAGAGTG GCTGGAAGAA GAACGCTTGT TCTCAAAACG TGATCCAATG CGTGGCTGCC
CCTTCTCCAT CTACTGATTC ATTCATTCAT TCATTCATTC ATTCATTCAT TCATTCTCAC CTAACACCCT TCCCCTTCCC
TATATTACTT CATTCTCATA TTTCCTTCTG CATCACTCTT TCTCTCTCTC TGTCTTTATC TCTTCCCACC ATAGTAACCT
TTCAATCCAA CAACACCATG TTAAGTGTAG CTCCTTCTGT TGATACCAAT ACTACCAAAG AGATGCCTGC AGCAAAAACA
GAGCAGAACC AAATTCCTCA GACTACCCAT GTATTCAAAT CAAAATTACC AGACATACCA ATCTCCAACC ACATGCCCCT
CCATGCCTAC TGCTTCCAAA ACCTCTCCAA ATTCGCCGAC CGTCCTTGCC TCATCGTCGG CTCCGCCGCC AAAACCTACA
CTTACGCAGA GACTCACCTT ATATCACGCA AGATTGCAGC CGGATTCTCG AACCTCGGCA TCCGAAAGGG CGACGTCGTC
ATGATCCTCC TCCAGAACTC CGCCGAGTTC GTCCTCTCCT TCCTCGCCGC CTCCATGATC GGTGCCGTTG CCACCACCGC
CAACCCGTTC TACACCGCCG CCGAGATCTT CAAGCAGTTC AGCGCCTCCA AGGCGAAGCT CATCATAACT CAGGCAATGT
ACGTTGACAA GCTCCGCAAC CACGACGGCG GATGGAGCCT CGGCGAGGAC TTCAAGGTCG TGACCGTGGA CGATCCGCCG
GAGAATTGCC TCCACTTCTC GGTACTCTCG GAGGCGAACG AGAACGACGT TCCGGAGGTG GAGATCCATC CGGACGATGC
GGTGGCGCTT CCGTTCTCCT CCGGCACCAC GGGGTTACCG AAAGGAGTGA TTCTGACTCA CAAGAGTTTA ACCACGAGCG
TGGCGCAACA GGTGGACGGG GAGAACCCTA ACCTCTACCT CACTACCGAG GACGTACTCC TCTGCGTGCT CCCGCTCTTT
CACATATTCT CGCTCAACAG TGTGCTGTTA TGCGCGCTGA GAGCCGGGAG TGGCGTTTTG CTGATGCAGA AGTTCGAGAT
TGGGACGCTG CTGGAGCTCA TACAGCGCTA CCGCGTGTCG GTGGCCATGG TGGTGCCTCC CTTGGTGCTG GCGCTGGCAA
AGAATCCGAT GGTCGCGAAT TTTGATCTCA GTTCAATACG GTTAGTTCTC TCCGGTGCCG CTCCCTTGGG TAAGGAGCTC
GAAGACGCCC TCCACAGCAG GGTGCCTCAC GCTGTTTTGG GACAGGGTTA CGGGATGACA GAAGCAGGGC CAGTCCTTTC
CATGTGCTTG GGCTTTGCAA AACAACCATT CCCAACAAAA TCGGGATCTT GTGGAACCGT TGTCAGAAAT GCAGAGCTAA
AGGTGGTTGA CCCTGAAACT GGTCGTTCTC TTGGCTACAA TCAACCCGGT GAAATTTGCA TCCGAGGGCT ACAGATCATG
AAAGGATATC TGAACGACGA CCAAGCGACG GCATCGACCA TCGACGCAGA GGGTTGGCTT CACACCGGTG ATGTTGGCTA
TGTAGATGAT GATGACGAAA TTTTCATTGT TGACAGGGTG AAAGAACTCA TTAAGTTTAA AGGCTTCCAG GTGCCCCCTG
CAGAACTCGA AGGGCTTCTT GTAAGCCATC CCTCCATTGC AGACGCCGCA GTTGTCCCAC AAAAGGATGT TGTTGCCGGT
GAACTTCCCG TTGCTTTCGT TGTCAGATCT AACGGCTTTG ATCTAACAGA AGAGGCTGTG AAAGAGTATA TAGCTAAACA
GGTGGTGTTT TACAAAAGAC TGCACAAAGT TTATTTTGTT CATGCTATTC CCAAGTCTCC GTCGGGGAAG ATATTAAGGA
AAGATCTGAG AGCAAAGCTT GAAGCAGCCG CCGCCGCCGC CGTCACTCCG ACGCCTTAAG GCCAGAATCT GCCTCTTTTT
TTGACGAGTT TTTCAGATTT TTTTTTTAAA TTATTGATTT GACACGTGTA ATTTACGTGT GAATGCTTGA AGCATAAAGT
GAATCCGAGA AGCAGTTGCA CTTGCATATA ATCACTGTAT TCTCATGTCC ATTACCTGAG CTTCTCCGGT ATTGTAATTT
TAGATAACTG TTTCGGTTCT TATATATTCA TGTTATCAGA TCTTGCTATC CTTTTTCTGC ATTCCTTTCG CTAGAGATTT
TTTATATT

>Vigan.10G235100.01
ATGTTAAGTG TAGCTCCTTC TGTTGATACC AATACTACCA AAGAGATGCC TGCAGCAAAA ACAGAGCAGA ACCAAATTCC
TCAGACTACC CATGTATTCA AATCAAAATT ACCAGACATA CCAATCTCCA ACCACATGCC CCTCCATGCC TACTGCTTCC
AAAACCTCTC CAAATTCGCC GACCGTCCTT GCCTCATCGT CGGCTCCGCC GCCAAAACCT ACACTTACGC AGAGACTCAC
CTTATATCAC GCAAGATTGC AGCCGGATTC TCGAACCTCG GCATCCGAAA GGGCGACGTC GTCATGATCC TCCTCCAGAA
CTCCGCCGAG TTCGTCCTCT CCTTCCTCGC CGCCTCCATG ATCGGTGCCG TTGCCACCAC CGCCAACCCG TTCTACACCG
CCGCCGAGAT CTTCAAGCAG TTCAGCGCCT CCAAGGCGAA GCTCATCATA ACTCAGGCAA TGTACGTTGA CAAGCTCCGC
AACCACGACG GCGGATGGAG CCTCGGCGAG GACTTCAAGG TCGTGACCGT GGACGATCCG CCGGAGAATT GCCTCCACTT
CTCGGTACTC TCGGAGGCGA ACGAGAACGA CGTTCCGGAG GTGGAGATCC ATCCGGACGA TGCGGTGGCG CTTCCGTTCT
CCTCCGGCAC CACGGGGTTA CCGAAAGGAG TGATTCTGAC TCACAAGAGT TTAACCACGA GCGTGGCGCA ACAGGTGGAC
GGGGAGAACC CTAACCTCTA CCTCACTACC GAGGACGTAC TCCTCTGCGT GCTCCCGCTC TTTCACATAT TCTCGCTCAA
CAGTGTGCTG TTATGCGCGC TGAGAGCCGG GAGTGGCGTT TTGCTGATGC AGAAGTTCGA GATTGGGACG CTGCTGGAGC
TCATACAGCG CTACCGCGTG TCGGTGGCCA TGGTGGTGCC TCCCTTGGTG CTGGCGCTGG CAAAGAATCC GATGGTCGCG
AATTTTGATC TCAGTTCAAT ACGGTTAGTT CTCTCCGGTG CCGCTCCCTT GGGTAAGGAG CTCGAAGACG CCCTCCACAG
CAGGGTGCCT CACGCTGTTT TGGGACAGGG TTACGGGATG ACAGAAGCAG GGCCAGTCCT TTCCATGTGC TTGGGCTTTG
CAAAACAACC ATTCCCAACA AAATCGGGAT CTTGTGGAAC CGTTGTCAGA AATGCAGAGC TAAAGGTGGT TGACCCTGAA
ACTGGTCGTT CTCTTGGCTA CAATCAACCC GGTGAAATTT GCATCCGAGG GCTACAGATC ATGAAAGGAT ATCTGAACGA
CGACCAAGCG ACGGCATCGA CCATCGACGC AGAGGGTTGG CTTCACACCG GTGATGTTGG CTATGTAGAT GATGATGACG
AAATTTTCAT TGTTGACAGG GTGAAAGAAC TCATTAAGTT TAAAGGCTTC CAGGTGCCCC CTGCAGAACT CGAAGGGCTT
CTTGTAAGCC ATCCCTCCAT TGCAGACGCC GCAGTTGTCC CACAAAAGGA TGTTGTTGCC GGTGAACTTC CCGTTGCTTT
CGTTGTCAGA TCTAACGGCT TTGATCTAAC AGAAGAGGCT GTGAAAGAGT ATATAGCTAA ACAGGTGGTG TTTTACAAAA
GACTGCACAA AGTTTATTTT GTTCATGCTA TTCCCAAGTC TCCGTCGGGG AAGATATTAA GGAAAGATCT GAGAGCAAAG
CTTGAAGCAG CCGCCGCCGC CGCCGTCACT CCGACGCCTT AA

>Vigan.10G235100.01
MLSVAPSVDT NTTKEMPAAK TEQNQIPQTT HVFKSKLPDI PISNHMPLHA YCFQNLSKFA DRPCLIVGSA AKTYTYAETH
LISRKIAAGF SNLGIRKGDV VMILLQNSAE FVLSFLAASM IGAVATTANP FYTAAEIFKQ FSASKAKLII TQAMYVDKLR
NHDGGWSLGE DFKVVTVDDP PENCLHFSVL SEANENDVPE VEIHPDDAVA LPFSSGTTGL PKGVILTHKS LTTSVAQQVD
GENPNLYLTT EDVLLCVLPL FHIFSLNSVL LCALRAGSGV LLMQKFEIGT LLELIQRYRV SVAMVVPPLV LALAKNPMVA
NFDLSSIRLV LSGAAPLGKE LEDALHSRVP HAVLGQGYGM TEAGPVLSMC LGFAKQPFPT KSGSCGTVVR NAELKVVDPE
TGRSLGYNQP GEICIRGLQI MKGYLNDDQA TASTIDAEGW LHTGDVGYVD DDDEIFIVDR VKELIKFKGF QVPPAELEGL
LVSHPSIADA AVVPQKDVVA GELPVAFVVR SNGFDLTEEA VKEYIAKQVV FYKRLHKVYF VHAIPKSPSG KILRKDLRAK
LEAAAAAAVT PTP*