Variant information

Chr10:27764702 - 27768262

Filter



 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
27764716CT662633.771.00UPSTREAM(|3130||None|Vigan.10G234800.01), UTR_3_PRIME(|255||None|Vigan.10G235100.01)Vigna nepalensis
27764826GA491995.771.00UPSTREAM(|3240||None|Vigan.10G234800.01), UTR_3_PRIME(|145||None|Vigan.10G235100.01)Vigna nepalensis
27764932AT471765.771.00UPSTREAM(|3346||None|Vigan.10G234800.01), UTR_3_PRIME(|39||None|Vigan.10G235100.01)Vigna nepalensis
27766041CA522080.771.00INTRON(|||None|Vigan.10G235100.01), UPSTREAM(|4455||None|Vigan.10G234800.01)Vigna nepalensis
27766125AT381674.771.00INTRON(|||None|Vigan.10G235100.01), UPSTREAM(|4539||None|Vigan.10G234800.01)Vigna nepalensis
27766149CT421813.771.00INTRON(|||None|Vigan.10G235100.01), UPSTREAM(|4563||None|Vigan.10G234800.01)Vigna nepalensis
27766246TA512045.771.00INTRON(|||None|Vigan.10G235100.01), UPSTREAM(|4660||None|Vigan.10G234800.01)Vigna nepalensis
27766262TC532028.771.00INTRON(|||None|Vigan.10G235100.01), UPSTREAM(|4676||None|Vigan.10G234800.01)Vigna nepalensis
27766314TC441931.771.00INTRON(|||None|Vigan.10G235100.01), UPSTREAM(|4728||None|Vigan.10G234800.01)Vigna nepalensis
27766315AG431931.771.00INTRON(|||None|Vigan.10G235100.01), UPSTREAM(|4729||None|Vigan.10G234800.01)Vigna nepalensis
27766591TC522106.771.00INTRON(|||None|Vigan.10G235100.01)Vigna nepalensis
27766769TA552232.771.00INTRON(|||None|Vigan.10G235100.01)Vigna nepalensis
27767458AC391474.771.00SYNONYMOUS_CODING(SILENT|gtT/gtG|V156|None|Vigan.10G235100.01)Vigna nepalensis
27767835GC401569.771.00NON_SYNONYMOUS_CODING(MISSENSE|Cat/Gat|H31D|None|Vigan.10G235100.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
27764987AACGG321496.731.00CODON_INSERTION(|gtc/gCCGtc|V569AV|None|Vigan.10G235100.01), UPSTREAM(|3402||None|Vigan.10G234800.01)Vigna nepalensis
27766070TTG451819.731.00INTRON(|||None|Vigan.10G235100.01), UPSTREAM(|4485||None|Vigan.10G234800.01)Vigna nepalensis
27766400AAT461366.731.00INTRON(|||None|Vigan.10G235100.01), UPSTREAM(|4815||None|Vigan.10G234800.01)Vigna nepalensis
27766483CCCTCCTTATTATAATT392191.731.00INTRON(|||None|Vigan.10G235100.01), UPSTREAM(|4898||None|Vigan.10G234800.01)Vigna nepalensis
27767971CCAGAG512243.731.00UTR_5_PRIME(|47||None|Vigan.10G235100.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
27765708(TA)57(TA)5521619.731.00INTRON(|||None|Vigan.10G235100.01), UPSTREAM(|4123||None|Vigan.10G234800.01)Vigna nepalensis
27768046(GAAT)10(GAAT)8311349.731.00UTR_5_PRIME(|122||None|Vigan.10G235100.01)Vigna nepalensis