GBrowse Details

Vigan.10G222400.01

Basic Information:
Name: Vigan.10G222400.01
Multiple alignment
Variant Information
Position: Chr10:26919891..26921736 (+ strand)
Length: 1846
Functional Information:
Description: Similar to Uncharacterized protein. [A9PA49, Populus trichocarpa]
InterPro: Glyoxalase-like domain (IPR025870)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.08,9.30,2.94,2.12,7.88,13.73,3.84,2.13
Arabidopsis thaliana homolog: AT1G64185.1
Automatic updates:
Name: NM_001248552 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max VOC domain-containing protein (LOC100500516), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:26919891..26920088 (+ strand)
Length: 198
Type: five_prime_UTR
Position: Chr10:26920089..26920249 (+ strand)
Length: 161
Type: CDS
Position: Chr10:26920539..26920674 (+ strand)
Length: 136
Type: CDS
Position: Chr10:26920749..26920805 (+ strand)
Length: 57
Type: CDS
Position: Chr10:26920806..26921736 (+ strand)
Length: 931
Type: three_prime_UTR

>Vigan.10G222400.01 class=Sequence position=Chr10:26919891..26921736 (+ strand)
GAATAACGTA AAATAGAAGC TAATTATGTA ATTAGATCGC AAATATGGAG GGGTTTTAGG TGAACCGAAG AGGTTCCGTT
CTGGTGATAT CCGTGAATAA AAAGAAATAG ATGGGCCAAA TTTGGCAGGC CCGAAACTTG AAATCCAATT GAGCGCACGT
GTGTCTGCGA GAAGAGCGAA ACGCAGACGG CGTCCCTGAT GGCAGCGTCG TTCAGGTGGA TATTACAACT ACACAGGGAT
GTTCCAAAAG CCGCACGCTT CTACTCCGAA GGCTTGGACT TCACCATCAA CGTCTGCTCT CTCCGGTGGG CCGAACTTCA
ATCCGGTTCT CTCAAGCTTG CCCTCATGCA TTCTTCCCAG TACTTCTCTC TTCTCTTCTC TTCTCATGCC CTCCATGTGT
TCGATGATTG TTCATTCCTA GTTGCCGTAG TTAATGACGA CCACAATGTG CATGGTTCTA TAATTAACTC TAACATGCTC
GAGAAACCTA CGAATAATAT CGTGATTAGT TTTTGATTTG TTATTCTTCT TTTTTTCTTG ATTTTCGACG GTTTTACTGG
TGGTCCAAAT TATTTTGTTT TGAAAGAAAT GTTTGGTTTT GAATATTGGA TGGAGTGGTG AGCTGCTGAT TCACTTTCAA
TTTCACAGTG ATCAAGCCAC CGCGCAGAAA GAGTACTCCT CCCTTTTGTC ATTTACGGTG ACTGACATGA ACAATACAGT
AAGTAAATTA ATGGCGTTAG GAGCTGAACT CGATGGGCCC ATCAAATATG AGATCCATGG AAAGGTATTG TGATTCACTC
ATAGCTTTCA TTCATCTGAG GACTTGCCCA ACGTCTGATG TAATTAACCT GTGATTAGGT TGCAGCTATG CGGTGTATTG
ATGGACATGT CTTAGGCCTG TATGAACCTC TCTAAGATGC ATAGCAGATT TAGTATCAAT AATACCCTCT CTTGTCATGG
TAACATTTTT TAGCCCGTCG TGATCTTGGA AAAGATAGGG TAAATATGTG ATACCTTTTG TTTTATGGAT TCCCTGCAAT
AATTGATAAT GTTATCTTGT CGAGCTCAAT AGCAACAGCA GGATATGGCG TGTGAAGCAA CAGACCTGAG AATAAGGTAA
AATGATTAGA AGATTGAAAA GAAGCTATTC AAATGCCTCC AAATTATCTG TCTTTTAGAA TGGGTTTTTT GGCACCATCC
ATATATAATT GACAGCAAAT CACCTCTTGA TTTCTTTTTT TCTCTTTAAG GAAGACAGCT TCTCTTTCCT CCCTGTTGAA
TTTTGGTTGA GTTATAATAT CTTGTCTTCT ACTTCTATCC GAGGATTGAT TTTTTTTTTT TTGGTGAAAC ATTTAAACTT
TAAAGCTTTC AATTATACCA CTAATTGTAG CCTTCGACCA TGCAATCATT CAATCATCCA TGGAATATTT TTTTGCCCAA
ATCCTAATTG GATTAATGCA TTTTTCTATT TCTCGTGCAT ACATGATATG GCGTCAGATA AAATTCTATA CAATCACTTG
AAAATATTAT CCATGTGTAG TATTTTAATG TGATACATGA AGGTGCTGTG TGCTCTTACT TGAAACATGA TGTTTTGTAT
CACTTGAAAA GATTCATATG TAGCACGGCC AAGGGAGAGA GCAATAAATT TATTCAACTG TTGCACTTTC TTCCTTAAGC
AAAAACTTAA GATCACCAAG ACAGAAAAAC AAACAACTTT ACGGGCACTA AAGAACTTAC ATTTGTTATA GAGCTGTTAA
AGTAGTTATC CGGTCCACTC TGGGTTAGCC ATTTTGTATG TTCACTCGAC CTACACTAAA TTTCAAATTC GTGAAATAAT
CATGAC

>Vigan.10G222400.01
GAATAACGTA AAATAGAAGC TAATTATGTA ATTAGATCGC AAATATGGAG GGGTTTTAGG TGAACCGAAG AGGTTCCGTT
CTGGTGATAT CCGTGAATAA AAAGAAATAG ATGGGCCAAA TTTGGCAGGC CCGAAACTTG AAATCCAATT GAGCGCACGT
GTGTCTGCGA GAAGAGCGAA ACGCAGACGG CGTCCCTGAT GGCAGCGTCG TTCAGGTGGA TATTACAACT ACACAGGGAT
GTTCCAAAAG CCGCACGCTT CTACTCCGAA GGCTTGGACT TCACCATCAA CGTCTGCTCT CTCCGGTGGG CCGAACTTCA
ATCCGGTTCT CTCAAGCTTG CCCTCATGCA TTCTTCCCAT GATCAAGCCA CCGCGCAGAA AGAGTACTCC TCCCTTTTGT
CATTTACGGT GACTGACATG AACAATACAG TAAGTAAATT AATGGCGTTA GGAGCTGAAC TCGATGGGCC CATCAAATAT
GAGATCCATG GAAAGGTTGC AGCTATGCGG TGTATTGATG GACATGTCTT AGGCCTGTAT GAACCTCTCT AAGATGCATA
GCAGATTTAG TATCAATAAT ACCCTCTCTT GTCATGGTAA CATTTTTTAG CCCGTCGTGA TCTTGGAAAA GATAGGGTAA
ATATGTGATA CCTTTTGTTT TATGGATTCC CTGCAATAAT TGATAATGTT ATCTTGTCGA GCTCAATAGC AACAGCAGGA
TATGGCGTGT GAAGCAACAG ACCTGAGAAT AAGGTAAAAT GATTAGAAGA TTGAAAAGAA GCTATTCAAA TGCCTCCAAA
TTATCTGTCT TTTAGAATGG GTTTTTTGGC ACCATCCATA TATAATTGAC AGCAAATCAC CTCTTGATTT CTTTTTTTCT
CTTTAAGGAA GACAGCTTCT CTTTCCTCCC TGTTGAATTT TGGTTGAGTT ATAATATCTT GTCTTCTACT TCTATCCGAG
GATTGATTTT TTTTTTTTTG GTGAAACATT TAAACTTTAA AGCTTTCAAT TATACCACTA ATTGTAGCCT TCGACCATGC
AATCATTCAA TCATCCATGG AATATTTTTT TGCCCAAATC CTAATTGGAT TAATGCATTT TTCTATTTCT CGTGCATACA
TGATATGGCG TCAGATAAAA TTCTATACAA TCACTTGAAA ATATTATCCA TGTGTAGTAT TTTAATGTGA TACATGAAGG
TGCTGTGTGC TCTTACTTGA AACATGATGT TTTGTATCAC TTGAAAAGAT TCATATGTAG CACGGCCAAG GGAGAGAGCA
ATAAATTTAT TCAACTGTTG CACTTTCTTC CTTAAGCAAA AACTTAAGAT CACCAAGACA GAAAAACAAA CAACTTTACG
GGCACTAAAG AACTTACATT TGTTATAGAG CTGTTAAAGT AGTTATCCGG TCCACTCTGG GTTAGCCATT TTGTATGTTC
ACTCGACCTA CACTAAATTT CAAATTCGTG AAATAATCAT GAC

>Vigan.10G222400.01
ATGGCAGCGT CGTTCAGGTG GATATTACAA CTACACAGGG ATGTTCCAAA AGCCGCACGC TTCTACTCCG AAGGCTTGGA
CTTCACCATC AACGTCTGCT CTCTCCGGTG GGCCGAACTT CAATCCGGTT CTCTCAAGCT TGCCCTCATG CATTCTTCCC
ATGATCAAGC CACCGCGCAG AAAGAGTACT CCTCCCTTTT GTCATTTACG GTGACTGACA TGAACAATAC AGTAAGTAAA
TTAATGGCGT TAGGAGCTGA ACTCGATGGG CCCATCAAAT ATGAGATCCA TGGAAAGGTT GCAGCTATGC GGTGTATTGA
TGGACATGTC TTAGGCCTGT ATGAACCTCT CTAA

>Vigan.10G222400.01
MAASFRWILQ LHRDVPKAAR FYSEGLDFTI NVCSLRWAEL QSGSLKLALM HSSHDQATAQ KEYSSLLSFT VTDMNNTVSK
LMALGAELDG PIKYEIHGKV AAMRCIDGHV LGLYEPL*