GBrowse Details

Vigan.10G220600.01

Basic Information:
Name: Vigan.10G220600.01
Multiple alignment
Variant Information
Position: Chr10:26791317..26795986 (+ strand)
Length: 4670
Functional Information:
Description: Similar to protein SGT1 homolog. [XP_004511553.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: CS domain (IPR007052)
SGS (IPR007699)
HSP20-like chaperone (IPR008978)
Tetratricopeptide-like helical (IPR011990)
Tetratricopeptide repeat-containing domain (IPR013026)
Tetratricopeptide repeat (IPR019734)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:48.45,65.17,76.85,76.40,54.95,48.42,31.27,105.81
Automatic updates:
Name: NM_001249643 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SGT1-1 (LOC100194420), mRNA.
PubMed ID: 24763608 NCBI(pubmed)
19061405 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:26791317..26791436 (+ strand)
Length: 120
Type: five_prime_UTR
Position: Chr10:26791437..26791596 (+ strand)
Length: 160
Type: CDS
Position: Chr10:26791682..26791751 (+ strand)
Length: 70
Type: CDS
Position: Chr10:26791874..26791998 (+ strand)
Length: 125
Type: CDS
Position: Chr10:26792299..26792440 (+ strand)
Length: 142
Type: CDS
Position: Chr10:26792942..26793038 (+ strand)
Length: 97
Type: CDS
Position: Chr10:26793147..26793212 (+ strand)
Length: 66
Type: CDS
Position: Chr10:26794120..26794255 (+ strand)
Length: 136
Type: CDS
Position: Chr10:26794393..26794475 (+ strand)
Length: 83
Type: CDS
Position: Chr10:26795000..26795104 (+ strand)
Length: 105
Type: CDS
Position: Chr10:26795226..26795333 (+ strand)
Length: 108
Type: CDS
Position: Chr10:26795334..26795986 (+ strand)
Length: 653
Type: three_prime_UTR

>Vigan.10G220600.01 class=Sequence position=Chr10:26791317..26795986 (+ strand)
AAATACCATA GAGGGAGGGA GAAGTAAAGC AAATGAAAAG AAGGGTCTAG AAGAAAAATC CCTGCTTAGA AATAAATATT
ACTGTGGAAT CGCACGTCAA CGAGCTCACT CCAAATCGAA ATGGCGAAAG AACTTGAGAG GAAAGCGAAG GAAGCATTCT
TCGATGACGA CTTCGCTCTC GCCGTCGATT TCTACTCCGA AGCCATAAAA CTAGATCCAA AGGACGCTCA TCTCTTCGCT
GACAGAGCAC AAGCCCATAT TAAGCTCAAC GCTTTCACTG GTTCATACCT TCACTCTCTC TATTCCCTTC ATTAATTTCA
CTTTCTCGCT CTCTTCCTTA CTCAAACGTA TGTTTCCACC GCCAGAAGCA ATTTCCGATG CCAACAACGC CATCTTATTA
AACCCTTCCT TGTCCAAGGC CTATCTTCGT AAAGGGTTTG CTCTTTTTCT CTTTCAGTAA TTTAGATACA AATTCAAAAG
TTGTCATAAT TTTCACATCG AATCAGCGTA TCTATGTTTC TACGCTTCTT AGTTGCTGTT GGTATTTGTT TTTACAGGAC
TGCTTGTATA AAGCTAGAAG AATATCACAC TGCCAAGTTG GCACTTCAAA GCGGTGCCGC TTTTGCGCCA GACGATTTAA
GATTCTCCAA GTTGATTCAA GAATGTGACC GCTTTATTTC AGGTGACCAC ACATTACACT TAACCTTTTT TTAGGTTTGA
ACTGTGTGTG CCGATATACA GTGACTGATT GTTGACATTG GATGAATCAG TTTAACTTTA GTAGTAATTA ACCTTTTTAT
CGTATCCAAT GAGTATGATC TTTTTATTAG ATTTATAGAT AGTAGATAGT GAAGTGCGAA ATTCACATTT GTATTGTATT
GTATAATGGT ATAATGAGTG AGGGGTACTA ATATAACATT TTTTTGTGAT TGAGAAATTG TGCTTCTCTT CATTTGATGT
ATTATATCTC TTCATTTATC AGAGGAACCA AATGATTTTG TTAGCACCAT ATCGTCAAAT GGTTTCCACT TGAACAATAC
AAATGACGGG GTGACTAAAG AAGCTGAGGA AGACAGTTTG GTATCCCAAA TCAAGGAAAT CACAATAAAC AGGCCAAAAT
ACAGGTTCTC GCCGTTTTAT TTTTCTTTCC TCCATGCTGT TATTTTTTAC ATTATTAAGT TCTGTACAAA AACTATAACC
ACCATCATGA GTCACTACTC CCATGAAATC CGTTATTAAT TCTACCAGAT ATAAGAATCA AGAACATTTT ATATGGTATT
TTATGGTTTT TAAATCTTAT TATTACTAGG TTCATTTAAG CTTATTATGT ATATCATAAA AAATATTTAA TCAAAAGCCT
CCTGGGATGA TGTTTCTTTA ATGATTATTT CGTCTAAAAA AGTGCTTATC AAGCGTGCAC TAGGGTCTAG GAGTATGGGG
AGTGTTAATA CGTCATGCTA CAATTCTATA AACTTCCAAT AATTTGTTTT TTTGGCATTG TGTCTCTCGT GTTGTATCTA
TGGATATTTC ATTTTATGCT GAAATTTGTT TCTCAATGGA TATTTCATTT TATGCTGAAA TTTGTTTCTC AACTTACGGA
TAACATGTTG ATTATGCTTA ACCAGACATG AATACTACCA AAAGCCAGAA GAAGTGGTTG TGACAATATT TGCAAAAGGA
ATATCAGCAA AAGATTTGGT TGCTGACTTC GGTGAACAGA TTGTAGGTTT ATATAATGGG TGCTTAGTAT TTCCCCTGTA
CCGCTGTTTT ATTTCTTCAT GTGTTTCATA TATAACTCTT CAGATAACTT GAAGTACTTG AACATTACAG CTTAGTGTAA
CTATTGATGT TCCTGGCCAA GATGTCTATC GTTTCCAACC TCGATTGTTT GGGAAGGTAA CTGATTTATA TTAATAGTTT
ACTTGTCTAT ACTTGATGAT TTTCTATCTT TTTGGATACC ACATAAAATA GATACAATTT TCTGACAGTG CCATAACAAA
AAGATCCTGC TTTATCTACC TTGTGATTTT GTTCTAATTT CACCATTAAA TAGACTCAGG ATGACTATTT ATTTTTTGTT
TGGTGGGATC TGAGGGGTCT CTGATAATAT TCCTCTTGTT TTTTTCTAGA TTTGTTTTGG AATACTTCAA TTATAGAATT
TAAATGGATT CATTTGGAAT GAATTGGTGT AGAAGTCCTT AACCTTTTTA AAATTAATTA ATCTCTTAAA TTAATATTAT
TCTAAATAAA CTTGGTACAT TAATGTATTT ACTGATGAAA TTATGATTTT TTTTTTTTTT ATTTTGAACT ATGGCTAAAT
AATCATTATA GCAGTCACCA TACAGCTATA ATGTGGCTTC TTTGACCCCA TGGGCTTCCA CCATAGGCAA TTTATGTACA
GTGGCCCGAT TTGGTGGTAC CGTGTGCCAC AATGACATGT TTATTTGGTT GAATTTTGGC CATCTGCCAT TTATAGTGTT
GCAAATACTC AATTATGTAA CTTGGTTCAA TAATGATTTT ATTCCTTATA TTTATCTGTT TTTTAATAGC AAGGCATTCT
ATTTCTTTCT TTTGTTGAAT TATTTTATGT ATATTTGAAT ATTACTTTAT AATTCAGGAT GAAAGTCTTG GGGATGTGGG
CTGGTGCTAG TTTAATATCT GTGTTTGTTT ATCAGGGGAC AGCTACTTGA TTTTATTTTT CTAATTTTAA AATAAGCCAT
GTATTGCTTG GGCAAATAAT AGCAAATAAA TATTCAAGTT CACTATTCAT TCCGTACCTT TTCCTTTTGC TTGAGCAAAT
CAGATAATAC CCAACAACTG CAAAGTTGTG GTATTGTCAA CCAAAATTGA AATTCGTCTT GCAAAAGCTG AAGCTATTAA
TTGGACATCT CTGGAATATA GCAAGGATAC ACTACCCACT AAAATAAGCA TGCCTATAGG TGAGATGACT ATTTATTTAT
TTTATCCTTT TGTGATACCT TTGTGTCCTT CTAATTGTTA ATTGAATAAT TGAGAATGTA ACTTGAGGCA ACTACTTTCC
TGATTGTGAG CTTACTCCCA CTGTTAATGC ATGCAGTTCA ATCTCAAAGG CCTTCATATC CATCATCAAA AGCAAAGACA
AAAGATTGGG ATAAGTTGGA AGCTCTAGTG AAAAAAGAGG TTTGGAAGCT ATCCCTTTCT CCCTTCGGGA TAATTTAGGC
TTAATTTTTA GCGGCTCCAT ATAATTTCAA TTTCAATTTT TACTAGTTGC CCATGACTTA GGATAAGCAA TTAGCTTTCT
TTGTGTGATT GTTTGGCAGT ACATCGACAA AATATAGTTT TATGTTTGAC AGAATGACTA ATTGTGGCAC CATCTTAGTT
GATTTGATGA TATTTTTACT GATGTGGATT ACCTTGAAGA CATTGGAATC GTGTGTTTCA ATTCCTTACC AGCAATGAGA
ATCCAAATCA TTGACATGCT GATGGATGAG TGTAGAGTTT AATGTGAAAA CTTCAGATTT TAAATTGTAG ATGACCAAAT
TCAGATTTTT TGTTTAGCTG GAAGACCTGA ATTAAACCTA CTCCGTATTC GAATAATAAA AAATTAGAAG GTTGCAAATC
TAGATCAAAC AGAATCTGTA CCTCATCTTG TAAGATACGA GACTGTTGCA ACGATATTGA CAAAATTGTG GCCTGCCTTT
CAGGAGAAAG AAGAAAAGCT TGATGGTGAT GCTGGTTTGA ATAAATTGTT CCGTGATATT TACCAAAATG CAGATGAGGA
CATGAGGAGA GCAATGAGCA AGTCTTTCGT AAGATATCCA TTCTGTGCAT GCTTTGATAT TGACGTGTTT TATTTCCCCC
GATTGCGGCT AGTTTTATCT TAAATCATTA ACATTTACTC CCTTTTTTTG AACTGCTTTC TTTTTGTAGG TGGAGTCAAA
TGGAACAGTG CTATCAACTG ATTGGAAAGA AGTGGGATCA AAGAAGGTGG AAGGCAGTCC TCCAGATGGC TTGGAGCTGA
AAAAATGGGA GTATTAATCG GGTACTAAAA TATCCATATT TGAAGCTGAT GCTTGTGGGA ATGTAATCAT TGTTAATGCT
GTTTTATTTG TGTAAGGGAC GTTATTTTTC TGTGTGAACA ACTTAATTTG CTTTTTGCTG TAGGAGTGGA TTTAATTTTC
TTGGTATGTG TTCATATAAT GTCGGATTCC AAGTTTTTAT TTTCTTATGA ATTAAATATT GGAAATTAAG TTTGACTGTG
GAGATGATTA TGAGCAGTAA TCTTGTCCGA GCTTCGTCAT AAGATAAAAG TCATCATCCT TGGTTCAGAG AAGTAGGAGG
CAAAACGTAG TCTTTAGCTT TTGTATATAA CCTGTGCCAT GTGGGAACTG AGTCTCCTCA GTTTTCCTTA CCTATCAATA
ACACCATCAT AAACATAAAG GTAAGTTTTT TGCTAGTCAA ATCTGTAAAA ATGGAAGATT GCATTAGGTT CCCTCAAATG
ATTCAAACTG AACATCGAAT CAAAATAATC GTATATGAAT GCAACACAAC ATTAGAATTT GGGCAGTTAT TGAATCTCAT
AAACCGGAAA AAAGGTGATA ATGTACTGCA TGAGTTGGAT AGATCAAGAA ACTACCTGTT TGAGGATGCC TTTTTATTTT
ATAAATATAA CTTAATACAG AGTACAAAAG 

>Vigan.10G220600.01
AAATACCATA GAGGGAGGGA GAAGTAAAGC AAATGAAAAG AAGGGTCTAG AAGAAAAATC CCTGCTTAGA AATAAATATT
ACTGTGGAAT CGCACGTCAA CGAGCTCACT CCAAATCGAA ATGGCGAAAG AACTTGAGAG GAAAGCGAAG GAAGCATTCT
TCGATGACGA CTTCGCTCTC GCCGTCGATT TCTACTCCGA AGCCATAAAA CTAGATCCAA AGGACGCTCA TCTCTTCGCT
GACAGAGCAC AAGCCCATAT TAAGCTCAAC GCTTTCACTG AAGCAATTTC CGATGCCAAC AACGCCATCT TATTAAACCC
TTCCTTGTCC AAGGCCTATC TTCGTAAAGG GACTGCTTGT ATAAAGCTAG AAGAATATCA CACTGCCAAG TTGGCACTTC
AAAGCGGTGC CGCTTTTGCG CCAGACGATT TAAGATTCTC CAAGTTGATT CAAGAATGTG ACCGCTTTAT TTCAGAGGAA
CCAAATGATT TTGTTAGCAC CATATCGTCA AATGGTTTCC ACTTGAACAA TACAAATGAC GGGGTGACTA AAGAAGCTGA
GGAAGACAGT TTGGTATCCC AAATCAAGGA AATCACAATA AACAGGCCAA AATACAGACA TGAATACTAC CAAAAGCCAG
AAGAAGTGGT TGTGACAATA TTTGCAAAAG GAATATCAGC AAAAGATTTG GTTGCTGACT TCGGTGAACA GATTCTTAGT
GTAACTATTG ATGTTCCTGG CCAAGATGTC TATCGTTTCC AACCTCGATT GTTTGGGAAG ATAATACCCA ACAACTGCAA
AGTTGTGGTA TTGTCAACCA AAATTGAAAT TCGTCTTGCA AAAGCTGAAG CTATTAATTG GACATCTCTG GAATATAGCA
AGGATACACT ACCCACTAAA ATAAGCATGC CTATAGTTCA ATCTCAAAGG CCTTCATATC CATCATCAAA AGCAAAGACA
AAAGATTGGG ATAAGTTGGA AGCTCTAGTG AAAAAAGAGG AGAAAGAAGA AAAGCTTGAT GGTGATGCTG GTTTGAATAA
ATTGTTCCGT GATATTTACC AAAATGCAGA TGAGGACATG AGGAGAGCAA TGAGCAAGTC TTTCGTGGAG TCAAATGGAA
CAGTGCTATC AACTGATTGG AAAGAAGTGG GATCAAAGAA GGTGGAAGGC AGTCCTCCAG ATGGCTTGGA GCTGAAAAAA
TGGGAGTATT AATCGGGTAC TAAAATATCC ATATTTGAAG CTGATGCTTG TGGGAATGTA ATCATTGTTA ATGCTGTTTT
ATTTGTGTAA GGGACGTTAT TTTTCTGTGT GAACAACTTA ATTTGCTTTT TGCTGTAGGA GTGGATTTAA TTTTCTTGGT
ATGTGTTCAT ATAATGTCGG ATTCCAAGTT TTTATTTTCT TATGAATTAA ATATTGGAAA TTAAGTTTGA CTGTGGAGAT
GATTATGAGC AGTAATCTTG TCCGAGCTTC GTCATAAGAT AAAAGTCATC ATCCTTGGTT CAGAGAAGTA GGAGGCAAAA
CGTAGTCTTT AGCTTTTGTA TATAACCTGT GCCATGTGGG AACTGAGTCT CCTCAGTTTT CCTTACCTAT CAATAACACC
ATCATAAACA TAAAGGTAAG TTTTTTGCTA GTCAAATCTG TAAAAATGGA AGATTGCATT AGGTTCCCTC AAATGATTCA
AACTGAACAT CGAATCAAAA TAATCGTATA TGAATGCAAC ACAACATTAG AATTTGGGCA GTTATTGAAT CTCATAAACC
GGAAAAAAGG TGATAATGTA CTGCATGAGT TGGATAGATC AAGAAACTAC CTGTTTGAGG ATGCCTTTTT ATTTTATAAA
TATAACTTAA TACAGAGTAC AAAAG

>Vigan.10G220600.01
ATGGCGAAAG AACTTGAGAG GAAAGCGAAG GAAGCATTCT TCGATGACGA CTTCGCTCTC GCCGTCGATT TCTACTCCGA
AGCCATAAAA CTAGATCCAA AGGACGCTCA TCTCTTCGCT GACAGAGCAC AAGCCCATAT TAAGCTCAAC GCTTTCACTG
AAGCAATTTC CGATGCCAAC AACGCCATCT TATTAAACCC TTCCTTGTCC AAGGCCTATC TTCGTAAAGG GACTGCTTGT
ATAAAGCTAG AAGAATATCA CACTGCCAAG TTGGCACTTC AAAGCGGTGC CGCTTTTGCG CCAGACGATT TAAGATTCTC
CAAGTTGATT CAAGAATGTG ACCGCTTTAT TTCAGAGGAA CCAAATGATT TTGTTAGCAC CATATCGTCA AATGGTTTCC
ACTTGAACAA TACAAATGAC GGGGTGACTA AAGAAGCTGA GGAAGACAGT TTGGTATCCC AAATCAAGGA AATCACAATA
AACAGGCCAA AATACAGACA TGAATACTAC CAAAAGCCAG AAGAAGTGGT TGTGACAATA TTTGCAAAAG GAATATCAGC
AAAAGATTTG GTTGCTGACT TCGGTGAACA GATTCTTAGT GTAACTATTG ATGTTCCTGG CCAAGATGTC TATCGTTTCC
AACCTCGATT GTTTGGGAAG ATAATACCCA ACAACTGCAA AGTTGTGGTA TTGTCAACCA AAATTGAAAT TCGTCTTGCA
AAAGCTGAAG CTATTAATTG GACATCTCTG GAATATAGCA AGGATACACT ACCCACTAAA ATAAGCATGC CTATAGTTCA
ATCTCAAAGG CCTTCATATC CATCATCAAA AGCAAAGACA AAAGATTGGG ATAAGTTGGA AGCTCTAGTG AAAAAAGAGG
AGAAAGAAGA AAAGCTTGAT GGTGATGCTG GTTTGAATAA ATTGTTCCGT GATATTTACC AAAATGCAGA TGAGGACATG
AGGAGAGCAA TGAGCAAGTC TTTCGTGGAG TCAAATGGAA CAGTGCTATC AACTGATTGG AAAGAAGTGG GATCAAAGAA
GGTGGAAGGC AGTCCTCCAG ATGGCTTGGA GCTGAAAAAA TGGGAGTATT AA

>Vigan.10G220600.01
MAKELERKAK EAFFDDDFAL AVDFYSEAIK LDPKDAHLFA DRAQAHIKLN AFTEAISDAN NAILLNPSLS KAYLRKGTAC
IKLEEYHTAK LALQSGAAFA PDDLRFSKLI QECDRFISEE PNDFVSTISS NGFHLNNTND GVTKEAEEDS LVSQIKEITI
NRPKYRHEYY QKPEEVVVTI FAKGISAKDL VADFGEQILS VTIDVPGQDV YRFQPRLFGK IIPNNCKVVV LSTKIEIRLA
KAEAINWTSL EYSKDTLPTK ISMPIVQSQR PSYPSSKAKT KDWDKLEALV KKEEKEEKLD GDAGLNKLFR DIYQNADEDM
RRAMSKSFVE SNGTVLSTDW KEVGSKKVEG SPPDGLELKK WEY*