GBrowse Details

Vigan.10G213700.01

Basic Information:
Name: Vigan.10G213700.01
Multiple alignment
Variant Information
Position: Chr10:26300145..26304260 (+ strand)
Length: 4116
Functional Information:
Description: Similar to Uncharacterized protein. [I1JA52, Glycine max]
GO: Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367)
Cellular Component: transcription factor TFIIE complex (GO:0005673)
InterPro: Transcription factor TFIIE beta subunit, DNA-binding domain (IPR003166)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:35.90,10.35,15.22,11.11,16.26,8.86,12.46,14.80
Automatic updates:
Name: NM_001253940 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription initiation factor IIE subunit beta-like (LOC100788089), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:26300145..26300499 (+ strand)
Length: 355
Type: five_prime_UTR
Position: Chr10:26300500..26300688 (+ strand)
Length: 189
Type: CDS
Position: Chr10:26301675..26301806 (+ strand)
Length: 132
Type: CDS
Position: Chr10:26301904..26302020 (+ strand)
Length: 117
Type: CDS
Position: Chr10:26303623..26303958 (+ strand)
Length: 336
Type: CDS
Position: Chr10:26303959..26304260 (+ strand)
Length: 302
Type: three_prime_UTR

>Vigan.10G213700.01 class=Sequence position=Chr10:26300145..26304260 (+ strand)
CACGCGTTGA ATTGCGGAGA AATATTATAA GAGACCTTCC TTCCTATGTC CGCGTGATTC AGATTGTGCA GGAGAAAAAC
CTGTGAAGGC AATCCCCTTT GCCACACAAT CCAATTTCCT GCGATCATAC ACCTTTCAAT CTTCTCGTAA TCTACCTTTT
TCAAAATCCA CTTACCACCT GTTTGATTCC CTTTCCAATT TGGATCCACG AATAATAAGA TATATTGATT AAGCCTTTTC
CCCAAATAAT AGACATAGAA GAGTAGATAA TCAAAAGTAC CAGCGCGGAG TTGATCGATT TGCAAATCTG AGAGTAAAAC
CTTGTGCTGC GATTACTATC AGTTTTTTAC GTCAGATGGC GTTTCAGGAA AAGGGAAACA GGTTTAAAAG GCAGCCAGAG
AAGAATTCTT CGGCTTCAAA CAATGGAAGA ACTCCAGGTG CTGTCAAGTT CTCTAACGAC ACGGAAAGAC TTCAACATGT
TAATAGCATC CGCAAAGCAC CAGTAGGGGC TCAGATGAAG CGTGTTATTG ATCTCCTTTT TGAGGTATAT ATAATTCTTT
CATTCCATCT TTTCTATATT ACCGTAAATA TTTGTGTTAT GGTTTATTCA TCTTTAGTAA AGACCGAATG GATCAATTAG
TGTAAAGTTG TTCTAGCACA ATAGGTAGTG GCAAAATACA GTTAAGTTAT ACGCAGAACC CATGGCTTCT TAGCCTAGTA
GGATTGTTTC TCGGGAAACA TATTTGTGAT TTCTAAATAA AGATGCTTGA TCAGCAGTGT TGAATATACA GCTGGAATAT
AGAACTCTTG ATGATCCTGA CTTATTCAAG TGTATTGTCT TTCACGTAAG ATACTTGATT TCTAAAAAAT TGTTCAATGT
ACTTTGTTAA TATACAGCTG GGTTATGCTT AGAACTCATA ATGATCCTAA CGGATCGGTA TTGTTGTCTC TCGTCTTGTG
GTCTCTAAAA AATGCACAAG GACCAGTGTC GAATATGCAG TTAGGTTATA CTCAGAATTG ATAGTGATTC TAACTAATTC
AAACAGGATT GTCTCTCGTG AAAAGTGAAA AATACCCGGA GTCTTTAAAA ATATGCTTAA TCAGCAGTGT CAAATATGCA
ACCGGGGTTA TTATACTCAG AACATCTAAT TGTCCTTATG ACTTGAATAA GATTGCTTAT CTTCTGTTAA AAATGTTTCA
CTTTAAGGAT CTTGATAACC AGTATCCTAA AGACAGTTAA CAAATTCAAA GTAAAAAGCC TTTATCAGAA TTCACATTGA
GAATGCATAG CAAATCCCAA TGGAAGTGGA TTAATGATAA TATTTAATTA AAAAATTGAA TTCATTTACC AGTGTCCTAA
GGGAACAGTT AGCATTTGGC TAATTGTAAT ATGACGCTGC TGATTATTGG TAAGAGGATG GGAAATAGTA TATGCTTTAC
TTTAGCCTTC TGTAAGTTAT TTTGTGTCTG ATGGTCATTC TGAATGGTGG TTAGTGAGTG TCATTGATGC TTAGTGTTTT
TGCTTTACAG ACCCGAAAGG CTTTAACGAT GGAGCAAATA AATGAAGCGT GTTATGTGGA CATGAGAGCT AATAAAGATG
TTTTTGAGAG TATGAGGAAA AACCCAAAAA TAAAATATGA TGGGGAAAGA TTCTCTTACA AGGTAACTTC TATTAACGTG
TTACTGTATC TACACTTTCA TGTTTCAGTT TTAGGTCCAT AGTTTGGTTT GTGATACTGG CATTGCTTTT TCTCTGCAGT
CCAAGCATGA TATTAGGGAC AAAAGTCAGC TGCTTGTCCT GGTGCGTAAG TTTCCAGAGG GTATTGCTGT TGTTGACCTA
AAAGATTCTT ACCCAACTGT GATGGAAGAC TTGCAGGTAA ATTATTCTTG TTAGTTAATG TGAAAACAAA CTTCATTTTA
AAGTGGATAC AAACCTCATT TTATAAAATC GATATTAGAA TTGAGTTAAG TTTAAATTTC ACTTTCTTAA GATCAAATGT
TTCTGTAAGA GAGTTGTGAA ATTCTTTTAA GACGATATAT GGACAAACTA ATATAGTGTA AATATGTATA AAAACTAGTT
ATATTATGTC TACCCATGGT CTTAGCTCTT TCAAGGAAAG GAACAAGTCC AAGTGTATAT CCCACCCTTT ATTTGTGCTT
TCAAGCACAT TCTAAATAGT TTCTCTCATT TTTTTAATTT ATTTCAATGT TTGTACTTGA AAATTTTCTT TTTCATGCAA
TGAAACTCTA TTTAGGCAAA TTCATAATGT GGATGTCACG AAAATAATAA ATTATTTCAA GTAAAGTTGT CTCTAACTTT
AACATAATGA GATTTTCACA CGTTAAATCT ACATGAAGTT ATAAGTTAGC ATAACTTGAA GAGGGTTCAG AGGCTGTCTT
TCATACTTTA AATTTATGTG TATTATTTTG AAAGTAAAAT GGCATAGTTG AAAGATTGAG TTTCAAATAT GGTTAGCACT
TGCTTATGAG ATTTTCACAC GTTAAATCTA CATGAAGTTA TAAGTTAGCA TAACTTGAAG AGGGTTCAGA GGCTGTCTTT
CATACTTTAA ATTTATGTGT ATTATTTTGA AAGTAATGGC ATAGTTGAAA GATTGAGTTT CAAATATGGT TAGCACTTGC
TTATGCCTTC TTGTTGTGAG TATATAAAAC GGAAGTATGG AAATCCAAAA TTGCTTTATA CAAGGACCAA ATTTTGGAAT
TTTATAACTT CAAATAAACT TTAGAATCTT ATAACTTTAA AATATGTTCA TGTCAGTTAA GTATAGGTGC CAAACTAGAA
AATTTGGGTG AACCAAATGT GATCTGATTT TTGGACTAAT TTGCTTATTC ACTGAAACAT CACATCAATT AAATTTTAAA
ATCATTTTAC CCCTTTCTAT GAACATCGAG TTGCTAGTAT TGAATTATGC CATTATGGCT TGTATTGAGG AAATGGATTT
TTCTCGTATA TGGGATTTTG AATTCTCTGG CATTACTTGA GCAAAAAGCT GAACTTTGCA TGTCATTATT ACCTGAAGGG
GTTCAGTTTT GTACCAAATA TTCATTTATT AGTGACATTC CATATTCTGT TTAACATATT ATTATTTTAT TATAAAAAAA
TATAAATCTC GTCCAAACCA CCCTTCAAAA AATTTATTTT TCTTGGGTCT TACATTTAGT TTTTCCACGT CTTCCTTCGT
TAGCATACTT TCGTTTTCTG TTTTTTTTTT TGAAAGACCA TTCTGTGTCT CTGCTTCTAT AGGTTGATGT GATACTAAGA
TAATACATGA GTGAAACTTT GTGGTGTTAT TTTTTTAAAA AAATATCCAA AGAATTGAAC TACTTAAAAA TTTAATTTGC
AACATCTAAT ACTTGGATAA TTTGTAGTGG TGAATGGTGA TTTTCTTAGA GCAGCAAGGA GTCAAAAATT AGTTAAATAA
TTGGTTTCTC ACGGAACTAG ACCGTTATTG GGTTGTAGGC TTTGAAAGCT TCAAGGGAGG TTTGGCTGTT ATCCAACTTT
GACTCACAAG AGGACATTGC CTACCCGAAT GATCCTAAAG TGCCCATTAA GGTGGATGAT GACCTAAAAC AGCTTTTTCG
GGAGATTGAA TTGCCTCGTG ATATGATTGA CATAGAGAGG GATCTACAAA AGAACGGAAT GAAGCCTGCT ACTAACACTG
CAAAGAGGAG GAGTGCAGCG CAAATGGAAG GCATTTCAAC AAAGCCTAAA CCTAAGAAGA AGAAGAATGA AATCACTAAG
AGGACCAAGC TGACTAATGC CCATCTTCCG GAGCTTTTTC AGAATTTAAA ATGATTCCTG ACTTAAGAAC AAGTGGTGAA
TGAATTCATA TAGCTCATCT GTTGACATAC AACATGTGGT TAAAAATTCT TTAAGTCGTT CAGATGGGTA TTGGCTTGTT
TTATTGTATT AGCAAACTGC TTCTGGTTTT GGATGTACCT CATCAGTTGG AGAGAAACGA TGGCCATAGC AAATACACAA
GGCATTCTTT TTATCTACAC TTATACACCA TTCTAAGGCT GAATGGTAAT GATCATTTGA CTCAGTGAAA AATATTCGTA
AAAGGTTCTC AGTGGTATTT TCTACCGTTG TTAACT

>Vigan.10G213700.01
CACGCGTTGA ATTGCGGAGA AATATTATAA GAGACCTTCC TTCCTATGTC CGCGTGATTC AGATTGTGCA GGAGAAAAAC
CTGTGAAGGC AATCCCCTTT GCCACACAAT CCAATTTCCT GCGATCATAC ACCTTTCAAT CTTCTCGTAA TCTACCTTTT
TCAAAATCCA CTTACCACCT GTTTGATTCC CTTTCCAATT TGGATCCACG AATAATAAGA TATATTGATT AAGCCTTTTC
CCCAAATAAT AGACATAGAA GAGTAGATAA TCAAAAGTAC CAGCGCGGAG TTGATCGATT TGCAAATCTG AGAGTAAAAC
CTTGTGCTGC GATTACTATC AGTTTTTTAC GTCAGATGGC GTTTCAGGAA AAGGGAAACA GGTTTAAAAG GCAGCCAGAG
AAGAATTCTT CGGCTTCAAA CAATGGAAGA ACTCCAGGTG CTGTCAAGTT CTCTAACGAC ACGGAAAGAC TTCAACATGT
TAATAGCATC CGCAAAGCAC CAGTAGGGGC TCAGATGAAG CGTGTTATTG ATCTCCTTTT TGAGACCCGA AAGGCTTTAA
CGATGGAGCA AATAAATGAA GCGTGTTATG TGGACATGAG AGCTAATAAA GATGTTTTTG AGAGTATGAG GAAAAACCCA
AAAATAAAAT ATGATGGGGA AAGATTCTCT TACAAGTCCA AGCATGATAT TAGGGACAAA AGTCAGCTGC TTGTCCTGGT
GCGTAAGTTT CCAGAGGGTA TTGCTGTTGT TGACCTAAAA GATTCTTACC CAACTGTGAT GGAAGACTTG CAGGCTTTGA
AAGCTTCAAG GGAGGTTTGG CTGTTATCCA ACTTTGACTC ACAAGAGGAC ATTGCCTACC CGAATGATCC TAAAGTGCCC
ATTAAGGTGG ATGATGACCT AAAACAGCTT TTTCGGGAGA TTGAATTGCC TCGTGATATG ATTGACATAG AGAGGGATCT
ACAAAAGAAC GGAATGAAGC CTGCTACTAA CACTGCAAAG AGGAGGAGTG CAGCGCAAAT GGAAGGCATT TCAACAAAGC
CTAAACCTAA GAAGAAGAAG AATGAAATCA CTAAGAGGAC CAAGCTGACT AATGCCCATC TTCCGGAGCT TTTTCAGAAT
TTAAAATGAT TCCTGACTTA AGAACAAGTG GTGAATGAAT TCATATAGCT CATCTGTTGA CATACAACAT GTGGTTAAAA
ATTCTTTAAG TCGTTCAGAT GGGTATTGGC TTGTTTTATT GTATTAGCAA ACTGCTTCTG GTTTTGGATG TACCTCATCA
GTTGGAGAGA AACGATGGCC ATAGCAAATA CACAAGGCAT TCTTTTTATC TACACTTATA CACCATTCTA AGGCTGAATG
GTAATGATCA TTTGACTCAG TGAAAAATAT TCGTAAAAGG TTCTCAGTGG TATTTTCTAC CGTTGTTAAC T

>Vigan.10G213700.01
ATGGCGTTTC AGGAAAAGGG AAACAGGTTT AAAAGGCAGC CAGAGAAGAA TTCTTCGGCT TCAAACAATG GAAGAACTCC
AGGTGCTGTC AAGTTCTCTA ACGACACGGA AAGACTTCAA CATGTTAATA GCATCCGCAA AGCACCAGTA GGGGCTCAGA
TGAAGCGTGT TATTGATCTC CTTTTTGAGA CCCGAAAGGC TTTAACGATG GAGCAAATAA ATGAAGCGTG TTATGTGGAC
ATGAGAGCTA ATAAAGATGT TTTTGAGAGT ATGAGGAAAA ACCCAAAAAT AAAATATGAT GGGGAAAGAT TCTCTTACAA
GTCCAAGCAT GATATTAGGG ACAAAAGTCA GCTGCTTGTC CTGGTGCGTA AGTTTCCAGA GGGTATTGCT GTTGTTGACC
TAAAAGATTC TTACCCAACT GTGATGGAAG ACTTGCAGGC TTTGAAAGCT TCAAGGGAGG TTTGGCTGTT ATCCAACTTT
GACTCACAAG AGGACATTGC CTACCCGAAT GATCCTAAAG TGCCCATTAA GGTGGATGAT GACCTAAAAC AGCTTTTTCG
GGAGATTGAA TTGCCTCGTG ATATGATTGA CATAGAGAGG GATCTACAAA AGAACGGAAT GAAGCCTGCT ACTAACACTG
CAAAGAGGAG GAGTGCAGCG CAAATGGAAG GCATTTCAAC AAAGCCTAAA CCTAAGAAGA AGAAGAATGA AATCACTAAG
AGGACCAAGC TGACTAATGC CCATCTTCCG GAGCTTTTTC AGAATTTAAA ATGA

>Vigan.10G213700.01
MAFQEKGNRF KRQPEKNSSA SNNGRTPGAV KFSNDTERLQ HVNSIRKAPV GAQMKRVIDL LFETRKALTM EQINEACYVD
MRANKDVFES MRKNPKIKYD GERFSYKSKH DIRDKSQLLV LVRKFPEGIA VVDLKDSYPT VMEDLQALKA SREVWLLSNF
DSQEDIAYPN DPKVPIKVDD DLKQLFREIE LPRDMIDIER DLQKNGMKPA TNTAKRRSAA QMEGISTKPK PKKKKNEITK
RTKLTNAHLP ELFQNLK*