GBrowse Details

Vigan.10G202200.01

Basic Information:
Name: Vigan.10G202200.01
Multiple alignment
Variant Information
Position: Chr10:25448601..25454595 (+ strand)
Length: 5995
Functional Information:
Description: Similar to phosphatidylserine decarboxylase proenzyme-like isoform X3. [XP_004511705.1, Cicer arietinum]
GO: Biological Process: phospholipid biosynthetic process (GO:0008654)
Molecular Function: phosphatidylserine decarboxylase activity (GO:0004609)
InterPro: Phosphatidylserine decarboxylase-related (IPR003817)
Phosphatidylserine decarboxylase (IPR005221)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.24,7.03,6.87,9.53,4.96,5.43,6.08,6.03
Arabidopsis thaliana homolog: AT4G16700.1
Automatic updates:
Name: NM_001253280 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phosphatidylserine decarboxylase proenzyme-like (LOC100811372), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:25448601..25448791 (+ strand)
Length: 191
Type: five_prime_UTR
Position: Chr10:25448792..25448981 (+ strand)
Length: 190
Type: CDS
Position: Chr10:25449258..25449346 (+ strand)
Length: 89
Type: CDS
Position: Chr10:25450018..25450071 (+ strand)
Length: 54
Type: CDS
Position: Chr10:25450186..25450251 (+ strand)
Length: 66
Type: CDS
Position: Chr10:25450695..25450755 (+ strand)
Length: 61
Type: CDS
Position: Chr10:25450904..25451013 (+ strand)
Length: 110
Type: CDS
Position: Chr10:25451105..25451355 (+ strand)
Length: 251
Type: CDS
Position: Chr10:25452079..25452185 (+ strand)
Length: 107
Type: CDS
Position: Chr10:25452664..25452731 (+ strand)
Length: 68
Type: CDS
Position: Chr10:25453382..25453459 (+ strand)
Length: 78
Type: CDS
Position: Chr10:25453806..25453928 (+ strand)
Length: 123
Type: CDS
Position: Chr10:25454216..25454374 (+ strand)
Length: 159
Type: CDS
Position: Chr10:25454375..25454595 (+ strand)
Length: 221
Type: three_prime_UTR

>Vigan.10G202200.01 class=Sequence position=Chr10:25448601..25454595 (+ strand)
CAAAACACCA ACTCCCTGGA AATGCACGAA ACAGAGATGA AGGAAAAAAA CAAACATCTA CATATTGATA TATGATATGT
GTATAGAGAT AACAGTTAAG TTAAAGAAAA AAACTAAATT AAATTATTTA AAAAAACCAA ATTAAACCAA TTGAACAAAT
ACTAACAAAA AATAAAATAT AATTAAACCC GATGAACACT GACCTACTCT ACGCCTCTTC ACGGCTTGCA AAAATGAAAT
ATAGGGTTTC ACACAAGTTC CCAGTGTTTC CTCACCGCAC CCATCCCTTT CAAAATGCTC GTTACATCAC ATCCTTCACC
AGAAGGTTTC TAATTCGTCG ACCTCGTGCT TCTATCAATG GCGGAAGCGG AAATTCCCAA GGTCAGTACA GTTGCTTCTC
CACTTTAATC CATACACAAG TTAAACTGTC ATAAGTTTTA AGGACGATGA ATACATTTAC CTACGATAAC TTACAAAAGT
AATTTATTTA TTTATTTTTG AAAGGGAATG TTTTTGCTGT GAATTGTGAT GGTTATAATC TTCGCAAGGA AACTAGTATA
GGAATGGCCG TGGATTTTCA AATTGAACGG AGTTTTGAAT ATGTTGTAAT TATTCATGCT CTGAAGCGTT GTGCTTATTT
GCTATGAGAG TGTGCAGGGG AGTCTTTTCT TGTACCTGGC GCGACGGTTG CTACCATACT TATGCTTGGC GTTCTCCATG
GCCGTAGACT CTATGTTGAC AAGAAGGTAC ATTCAATTTT TATAGTGTTA AGACTAATTG GTAAGGCAAG GTTTAGTCGC
CAAACTGATT CTTCTAGCAA CATCAATGGC CACATTTATT TTTTCGACTT GCCTACATTG GCTCTGATGG ACCTGAAGCT
TCCCCCGAAT ATCCTTATCC TGCTTAACCA AGGTTCACAT GCTTGGGGCA TGCTTACTGG TTTATCAACT AGTAGAGTCT
AATTGCATTG TCTACGAGCC TGTTTGTTTT ATGCCAAACC ATGGTTGCGT TATATCAACC TTGATAGCCC ATACAGAAAC
CCTGTTAAAT GAACGTGGTA TTTTTTTCCT TCCACAAAAC ATGCTGGAGA CACTATGACT TGTCAGTGAT TGATCATTGC
CATTCCTCCT CCTTTTATAA GTCCGTTGTT ATTTTGGGTC ATTGCAAAAG TAAAATAAAT AAAGAGAAAT AGAAGTATAT
TTTTAACATT CTAGACAAGT GAGAAGTTTA AGCTTATTTG TTGGTAGTGA GGCCTTCAGT CTTTTCCACA CTGTTTTCAG
TCATGATGCT GGAAATTTTT TCGCACTTCA GTAGTAGAAT CTTTTTTAGG TTCTGTTTGC TCAATTGGAA TTCTAGCCTT
AAATGCTTTG TAGTTTACGT AGTCTCTACA GAATAAATTT GATTACCCTT GTGGCAGACT GAAGAGATGA AGGAAAAAGG
AATTGAAGTG GAATTCCAGC CTGATATAAA GGTAAAACTT GTGCATCAGT ACAAAAAGGA AACATTTGAG TTCTTGTATG
TGTGTGTGTA TCATTACATA TTTGTTTTGA TTCTGAGACA TGTGCCATGG CTTTGTCAAC ACTAGGCTAC ATTTTTGAGA
TTACTGCCTC TTCGTTCAAT TTCTAGATGC TGGGGATACT TGACAAGCAT GGTAAGAAGT CAATGTGATA TTGGAATATC
CTTTTTTAAT ATATATTTAT ATGTATTAAT CAGTGAAGCT TTATCTTTTT ATGTTTGCAA TTTTTTTCGC CTTTTGTTGC
TACTGGTAGT AAGTATTTGG AAATAGAAAC AATATTCAGA ATTTATGAGT ACTTTTAGCA TTAGAGACCT GATGAAGAAA
TAAAGTTGAC TTTTAATACG TGAAAAACAG CAATATTATT AGAAGGAAAG AAGCGAAAGT AAATAATAAA GGATGAGAGA
CAAAGCAGCA CTCCTAATCA GAAAATAGAG AGTACAAGAT AAAAGTAATG CAGCATATTT TAAAGTACAT TTTTCTATAA
TGTACTTCTC TCTTCTTTTA TCAAGTCAAA GCTAACTCTA TAATTTGAAA ATGATTATGC ATGTTATATT ATTTATATGA
TTTTACTTAT TCAGGAAATA CCAGTTTGGC TGAGGCCCGT TATCTATAAA GCTTGGGCTC GGGCATTTCA TTCAAGTATG
ATTTATATAT CTTTTAATCA TTTTCTTGTT ATTTGCTCCT ATAACCATCA TCTCGTGAAA CTGGCAGAAC TTGCTCATGA
TAAACTATGA TTTATAATAC ATTTAAGAAT ATTCTTATTG TTATAACATT GTTGACACCT CAGATTTAGA AGAAGCTGGT
TTACCTCTAG ACCAGTATGC CACTTTAAGG GACTTTTTTG TTCGCACTTT GAAAGAAGGT TCCAGGCCTA TTGATGTTGA
TCCGCAGTGT CTGGTAACTG GTAACAGCTA TTTGAAATTA TCTAATGCCT TTGTGCCATT TCCAATTAAT ACATAACCTG
TTTGACCATA CTTATTTTCT GCAGGTTAGT CCTGTGGACG GTACAGTTTT AAGATTTGGG GAGTTGAAGG GAGCAGGGGC
AATGATTGAA CAAGTTAAAG GGTTTTCATA TTCAGTTTTT TCTCTTCTTG GTGCAAGCCC TTTCCTTCCA ACGACAGCAG
ATGGTGATGT GCAAAAGAAG CATAATGAAT CAATAACAAC TACTGAGAAG AGCAAGAAGT CATGGTGGAG AGTTTCATTG
GCTTCACCAA AAGTTTGGGA CCCAAAATCA TCATGGTAAT GTGGTCAAGT ATTTCTAATT GTCTTCTGCT ACCAATGTCT
CACTGTATCT GGTTGTAAGC ATTTATAGTT AAGGAAGGGC CTGTTTATTG AAGAAAATCA TAGATGGATA AATTTATCTG
TTCAACCTCT CAAATTAACT GCTAAATTTT CATCATGCAT CTACTCTTAA TTTTTCCATG ATGCATATTA TCATTTATAT
TTATGATCAT TATTTGAGTA CTTCTGGTAG GTTTCAAAGG TATTTGAGTT TCTATCGTAA AGTGGCTTAT TCACTTCAAT
TGATAGAGAC TTTATGATTT AGCAAGCTTG CTGCAGCTGC AATTGAAATC AAAATTGTTT TACATAATTG GAGGAATCTT
AGGATTCTAT AAATTCTATG CAATGAGATT TTTTTTTCCT TTTCTAACTG AAAATTACAG TTTTTTTTGT CAACTTTTCA
AGAAATAATC CCAGCTTCTC TCTCAGTATG GTTCTTACCA TTTTTACCAT TATAAAGCAA ACATAAGAGT AGTTTGAATT
GCTTTCATGG TTTAGGAACA TGCAGCCCAT ATTGAAATAC TTTGTCTATT ATCAAGAGTG TGACCTTTTC ACAATAAATG
CTGATTGTTG TTTTTTTTTT TTTAACTCTG GCCCTGAATG TATCTGCTAT ACTTTTATCG TCAGAGAGGC TGAATGTGTG
GCATGACAAT TCATACGTCG TTAAATTTTC CATTTCAGCC CAAAGAGAGG ACTTTTTTAC TGTGTGGTTT ACTTGAAGCC
TGGAGATTAC CATCGAATAC ACTCCCCAGC TGATTGGAAC GTTCTTGTGC GCAGGCATTT TTATGGTAAA CCATCTCATG
AAAGCGTTAA CAGTCTAAGA AATTGACAAG AACACTTATT AATCTTCTGT TTATCCAAAA TAGCCAAGTA ATTTCTAACT
GTGGTCATAA AAAATATCCC ATGCAAGATA GCAAAGAAAA GATTCATATA ACATGATTTT CATGTTGAAT TTTTTTACCT
TTTTTTTTTA ATTTTATTTT CCTCTCTACG AAAACTTATA GATTTCATTG GTGATGGGTA CAGGTGCACT TTCTCGATTT
ATCATGGATA ACTGTTTTAT AAAGCTATGC GAATCTATTT CTTCCCCTTA CATAACATGA AAATAGTTAT TTGAACCAGG
TGGGAGAAAA TGATGAAGTA GATCTGCAGA TTTTCAAGTT TTGCATTTAT TGTATATCAT GCTGCACAAT AAGCACGTTA
ATTAATTTCT ATTTAGTTTT ACTGTATTCT TATAATCTTT TTGGTTTATT GTTTATGTTG CAGGCCGTCT TTATCCCCTG
AATGAACGTG CTACTAGAAC AATTAGAAAT CTGTACATTG AGAACGAGAG GGTAATTCAT ATCTGCCTGC CATGGTCAAT
GTCAGAGTGT TGTGCTTTTC TGTTAGCTTT CCTTTCAATG TCCTCATGTT TCTATTTATA TATTTATTTT GGCGATTTGA
ATAAAAATTG AACTTCAAGA CTTTTCTACC TTAATTAATC CGACCCAACA TTCACTGCTT CAGTTAAACT AATTGGCACA
TTGATCTAAT TTTATATTGA AAATAAATCT ATTCCTGAAA ATAAATTAGA TGTTGTTGCA CTAATGTTCT AAGTGCAAGG
GGACTCTTTA TCTGAATTTA CCTATTTTTC TCATTTGGAT ATTTTTCTTG GGAAACAATT AAGTCATGAG TTCAAGTTCT
TGGTAGGAGT GGCATTCTTT CTACTTAATA CTCCATATGA ACTCTGAAGA CTTCTCTAAT CCTCTCTTTT ACCATCGTCT
TGCTTTTATT TTGATAAGAA TAATGGTTTG TTGATGAACT CATTCATGAA GAATTCAATA ACCTAGTAGT GAATTCTGTC
ATAATTATTT GCCAACTATC TCAAGTAGTT AACGATTCCT TCATAAATAA TTTCATCACA CTGGTCTTTG AATTATAAAC
TTTATTTTTT TCTTTGATGT TTTTTACTTT TTCAATTCTT GATTGACTCT AAATTCTTCA GGTCGTTCTT GAAGGTCTGT
GGCAGGAAGG ATTTATGGCA GTTGCTGCAA TTGGTGCGAC AAATATTGGG TCGATTGAGG TTTGTTCATT CTTCCTTAAG
GTTGTAACTA TTGTACTCTA ACGTCCATTG AAAAAAACAA GGGTTATATT TTAGTGTTAA CTCTGGGAAA AGACTAATGT
ATCTGTTGAT TTTTAAAATC TTATTTTTCT TTCCCAGGAA GTTCACTATA TATGCTTTCA TGGATCACCA GCAACTTTTC
TTTTTAAGGA TAAGGATAGC AGAATTAAAT GATAGAAGCC ATCTGACCTT ATATTTAGAG ATAACCGATT GGCTTGGAAT
GACTTGTATT TACAGTTCCT ATATTCTTTC GATGTCATTG ACTGAATTAT TTATTAATGT CTTCAGTTTA AATTTAACAT
GACAGCTTTT CATTGAGCCT GAACTTCATA CAAATAGGCC AATGAAGAAG TTTCTACATT CAGAGCCTCC TGAAGAACGG
GTTTATGATT GTGAAGGTGT AGGCAGAGTG CTCACCAAAG GGGATGAGGT TAGAAGTGTT TTTACGTTTT GGAACTCCTG
CGCTTGATTC ACTGTTATAG ATTGAAGTAA CACTGAGTAC AAAATCTATA CAACTATGTA TGAGGATCAT ATGATTGAAT
ATTGGAATCT GTATACTTGC GAAAACTGTT ATCTTTTCTT TTAAGATTAA GTATTGTCGA CGTGCTGTTG AATTTGGGTT
CCTTTTGTTT ATTGTACATA AAGTTTAGCT TACGAACTTA AGAGTTGACA ATACATTTTG CATAACTTAG TTCCTTTTTT
CTTTTGTTAA TCCAGTTAGG TGCTTTCAAC ATGGGATCAA CAGTTGTACT TGTTTTCCAA GCTCCGATTT CAAAACTCAA
TGAGGGCGAT TCATCTCAAG AGTTCAGGTT CTGTGTCCAA CGTGGGGATA GAATTTGTGT TGGTGAGGCT CTAGGAAGGT
GGCATAGTTC GTGACAAGGT TAATTTTGTG TGCTGCTCAT TCTTATATTT GTGAATGTAC GCTGCATCAG ACTGTTTGGT
ATTGAAACTT CAAAGCATTT TGGGAAATCT TAAGGAGAAT CATTGGTACC TCTTACTGGA CACTGTGATT AGTGATTAAT
TTATGGGTGT TACATGGTTA TTTAGTTTAT GGCCGTCTGA TTTACTACGG TAAACATATC TAAGAACGTT GAATA

>Vigan.10G202200.01
CAAAACACCA ACTCCCTGGA AATGCACGAA ACAGAGATGA AGGAAAAAAA CAAACATCTA CATATTGATA TATGATATGT
GTATAGAGAT AACAGTTAAG TTAAAGAAAA AAACTAAATT AAATTATTTA AAAAAACCAA ATTAAACCAA TTGAACAAAT
ACTAACAAAA AATAAAATAT AATTAAACCC GATGAACACT GACCTACTCT ACGCCTCTTC ACGGCTTGCA AAAATGAAAT
ATAGGGTTTC ACACAAGTTC CCAGTGTTTC CTCACCGCAC CCATCCCTTT CAAAATGCTC GTTACATCAC ATCCTTCACC
AGAAGGTTTC TAATTCGTCG ACCTCGTGCT TCTATCAATG GCGGAAGCGG AAATTCCCAA GGGGAGTCTT TTCTTGTACC
TGGCGCGACG GTTGCTACCA TACTTATGCT TGGCGTTCTC CATGGCCGTA GACTCTATGT TGACAAGAAG ACTGAAGAGA
TGAAGGAAAA AGGAATTGAA GTGGAATTCC AGCCTGATAT AAAGGCTACA TTTTTGAGAT TACTGCCTCT TCGTTCAATT
TCTAGATGCT GGGGATACTT GACAAGCATG GAAATACCAG TTTGGCTGAG GCCCGTTATC TATAAAGCTT GGGCTCGGGC
ATTTCATTCA AATTTAGAAG AAGCTGGTTT ACCTCTAGAC CAGTATGCCA CTTTAAGGGA CTTTTTTGTT CGCACTTTGA
AAGAAGGTTC CAGGCCTATT GATGTTGATC CGCAGTGTCT GGTTAGTCCT GTGGACGGTA CAGTTTTAAG ATTTGGGGAG
TTGAAGGGAG CAGGGGCAAT GATTGAACAA GTTAAAGGGT TTTCATATTC AGTTTTTTCT CTTCTTGGTG CAAGCCCTTT
CCTTCCAACG ACAGCAGATG GTGATGTGCA AAAGAAGCAT AATGAATCAA TAACAACTAC TGAGAAGAGC AAGAAGTCAT
GGTGGAGAGT TTCATTGGCT TCACCAAAAG TTTGGGACCC AAAATCATCA TGCCCAAAGA GAGGACTTTT TTACTGTGTG
GTTTACTTGA AGCCTGGAGA TTACCATCGA ATACACTCCC CAGCTGATTG GAACGTTCTT GTGCGCAGGC ATTTTTATGG
CCGTCTTTAT CCCCTGAATG AACGTGCTAC TAGAACAATT AGAAATCTGT ACATTGAGAA CGAGAGGGTC GTTCTTGAAG
GTCTGTGGCA GGAAGGATTT ATGGCAGTTG CTGCAATTGG TGCGACAAAT ATTGGGTCGA TTGAGCTTTT CATTGAGCCT
GAACTTCATA CAAATAGGCC AATGAAGAAG TTTCTACATT CAGAGCCTCC TGAAGAACGG GTTTATGATT GTGAAGGTGT
AGGCAGAGTG CTCACCAAAG GGGATGAGTT AGGTGCTTTC AACATGGGAT CAACAGTTGT ACTTGTTTTC CAAGCTCCGA
TTTCAAAACT CAATGAGGGC GATTCATCTC AAGAGTTCAG GTTCTGTGTC CAACGTGGGG ATAGAATTTG TGTTGGTGAG
GCTCTAGGAA GGTGGCATAG TTCGTGACAA GGTTAATTTT GTGTGCTGCT CATTCTTATA TTTGTGAATG TACGCTGCAT
CAGACTGTTT GGTATTGAAA CTTCAAAGCA TTTTGGGAAA TCTTAAGGAG AATCATTGGT ACCTCTTACT GGACACTGTG
ATTAGTGATT AATTTATGGG TGTTACATGG TTATTTAGTT TATGGCCGTC TGATTTACTA CGGTAAACAT ATCTAAGAAC
GTTGAATA

>Vigan.10G202200.01
ATGAACACTG ACCTACTCTA CGCCTCTTCA CGGCTTGCAA AAATGAAATA TAGGGTTTCA CACAAGTTCC CAGTGTTTCC
TCACCGCACC CATCCCTTTC AAAATGCTCG TTACATCACA TCCTTCACCA GAAGGTTTCT AATTCGTCGA CCTCGTGCTT
CTATCAATGG CGGAAGCGGA AATTCCCAAG GGGAGTCTTT TCTTGTACCT GGCGCGACGG TTGCTACCAT ACTTATGCTT
GGCGTTCTCC ATGGCCGTAG ACTCTATGTT GACAAGAAGA CTGAAGAGAT GAAGGAAAAA GGAATTGAAG TGGAATTCCA
GCCTGATATA AAGGCTACAT TTTTGAGATT ACTGCCTCTT CGTTCAATTT CTAGATGCTG GGGATACTTG ACAAGCATGG
AAATACCAGT TTGGCTGAGG CCCGTTATCT ATAAAGCTTG GGCTCGGGCA TTTCATTCAA ATTTAGAAGA AGCTGGTTTA
CCTCTAGACC AGTATGCCAC TTTAAGGGAC TTTTTTGTTC GCACTTTGAA AGAAGGTTCC AGGCCTATTG ATGTTGATCC
GCAGTGTCTG GTTAGTCCTG TGGACGGTAC AGTTTTAAGA TTTGGGGAGT TGAAGGGAGC AGGGGCAATG ATTGAACAAG
TTAAAGGGTT TTCATATTCA GTTTTTTCTC TTCTTGGTGC AAGCCCTTTC CTTCCAACGA CAGCAGATGG TGATGTGCAA
AAGAAGCATA ATGAATCAAT AACAACTACT GAGAAGAGCA AGAAGTCATG GTGGAGAGTT TCATTGGCTT CACCAAAAGT
TTGGGACCCA AAATCATCAT GCCCAAAGAG AGGACTTTTT TACTGTGTGG TTTACTTGAA GCCTGGAGAT TACCATCGAA
TACACTCCCC AGCTGATTGG AACGTTCTTG TGCGCAGGCA TTTTTATGGC CGTCTTTATC CCCTGAATGA ACGTGCTACT
AGAACAATTA GAAATCTGTA CATTGAGAAC GAGAGGGTCG TTCTTGAAGG TCTGTGGCAG GAAGGATTTA TGGCAGTTGC
TGCAATTGGT GCGACAAATA TTGGGTCGAT TGAGCTTTTC ATTGAGCCTG AACTTCATAC AAATAGGCCA ATGAAGAAGT
TTCTACATTC AGAGCCTCCT GAAGAACGGG TTTATGATTG TGAAGGTGTA GGCAGAGTGC TCACCAAAGG GGATGAGTTA
GGTGCTTTCA ACATGGGATC AACAGTTGTA CTTGTTTTCC AAGCTCCGAT TTCAAAACTC AATGAGGGCG ATTCATCTCA
AGAGTTCAGG TTCTGTGTCC AACGTGGGGA TAGAATTTGT GTTGGTGAGG CTCTAGGAAG GTGGCATAGT TCGTGA

>Vigan.10G202200.01
MNTDLLYASS RLAKMKYRVS HKFPVFPHRT HPFQNARYIT SFTRRFLIRR PRASINGGSG NSQGESFLVP GATVATILML
GVLHGRRLYV DKKTEEMKEK GIEVEFQPDI KATFLRLLPL RSISRCWGYL TSMEIPVWLR PVIYKAWARA FHSNLEEAGL
PLDQYATLRD FFVRTLKEGS RPIDVDPQCL VSPVDGTVLR FGELKGAGAM IEQVKGFSYS VFSLLGASPF LPTTADGDVQ
KKHNESITTT EKSKKSWWRV SLASPKVWDP KSSCPKRGLF YCVVYLKPGD YHRIHSPADW NVLVRRHFYG RLYPLNERAT
RTIRNLYIEN ERVVLEGLWQ EGFMAVAAIG ATNIGSIELF IEPELHTNRP MKKFLHSEPP EERVYDCEGV GRVLTKGDEL
GAFNMGSTVV LVFQAPISKL NEGDSSQEFR FCVQRGDRIC VGEALGRWHS S*