GBrowse Details

Vigan.10G155500.01

Basic Information:
Name: Vigan.10G155500.01
Multiple alignment
Variant Information
Position: Chr10:21398592..21402341 (+ strand)
Length: 3750
Functional Information:
Description: Similar to Uncharacterized protein. [I1LHZ2, Glycine max]
GO: Cellular Component: intracellular (GO:0005622)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, B-box (IPR000315)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.02,0.03,17.89,10.32,3.26,3.03,1.25,10.00
Automatic updates:
Name: NM_001254610 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable salt tolerance-like protein At1g78600-like (LOC100795117), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:21398592..21400002 (+ strand)
Length: 1411
Type: five_prime_UTR
Position: Chr10:21400003..21400095 (+ strand)
Length: 93
Type: CDS
Position: Chr10:21400515..21400611 (+ strand)
Length: 97
Type: CDS
Position: Chr10:21400696..21400811 (+ strand)
Length: 116
Type: CDS
Position: Chr10:21401108..21401389 (+ strand)
Length: 282
Type: CDS
Position: Chr10:21401390..21402341 (+ strand)
Length: 952
Type: three_prime_UTR

>Vigan.10G155500.01 class=Sequence position=Chr10:21398592..21402341 (+ strand)
CCTATTTAAA ATGACCAATC TCTAGCCACA TACTTAAAAA CAGTTGTTAT AAACTCATTA CAGGTTTTAT GTTATAATCA
ATATTTGCTT TAAAAGTTGC CACTGTTCTA CATTACTGTT TCATGCATCT GTATACATCT CATCTTTACT AAATGGTAGC
ACACACTAAA CAAAAGCAAT CCAGAACAAA CTCACTTTAT TCTCTATGAA AAAAAAAAAG ACATATAAGG TTACTGATGG
GAAATTCCCA ACTTTTTAAA GAGTATCAGC TAAAATGTCA GGCTAATTTG ACAGAGCTTC CGAAACATGT GATGATGTAA
AGCAATAATA GAGGTGACAA GCTGTAAACA AATCTTGAGT CCCCTTTTAT TTCTGTTTGG GAAAGTTATT CTAGGAACAG
TGAAAATTAC CATTTGATCA GTGTCTCTTG TGCTTCTGAT TGTGGACTGT AAACAGTATC TAAAGTTCTT TTTTTTCTCG
GCCAACTACT CATGCAAAGA TGTTCAGACC TGTTTGATGA GTCGTCCATT TATTAACAGT ATAGATATTG ACGAATCCAT
TGAAATCCAC CATCCCTGAA ATGCAAAAAA GTTGGTCGCA CTACAAATCT TGGCAATATT ATGTGTCTCT TTAAAGGGAA
GTTGGGAGAT AAGAGATAAC CTACTTGATT CATTCAAAAG TCTTGTTTTT ATAAATCCAG TAAAACTCTA AAAAAGCAAA
CGTACGCATC TTATAGATTT GTAATAAGTG TGTATGAGAA TTTGGGTGTA GAGTAGATAA AGAAGTTAAA GTAAGAGTGA
GCAGGAAAAT GGATAGAAGG GACAGGTAGA GAAGAAGATG GAAGATTCAT GGCTTTGGTT GTTGTGGCTG AAAAGGAAGG
AGAAGTTAGG CAGAGGCTAG GAAGGATGAA AGAAACAAGA AACATGGGAA GGATGTGGGT CCCATGTCAG ATAATTAATT
GGTGGGTGAG AATGAAGCGT GAGTTGCTGT CAACTCTGCA TTGGCTTTGA ACTTGTGGCT ACGAAGTAAT GTTTGAGGCC
AACAGAGTTG ACAAACACTC ATTTATTGTG TCTTTGCAAA GTTTTGGAAT CAACCATCAA GGTCCCCCCA CTCCTTCAAA
ATCCTTTCTT TTATCCCACA CTCTAATCAT AGTCCTTCCC CATCATCATC TTCATCAACC ACCACCTCCA CCCTCTTTCA
CAAACAACAT AACATTCGCT GAAAAACAAA ACTATCATAC CCACATGGAT TTGGTGAACA CCTGTCTTCT TCTCTGCCTC
CCTTCTCTTT CTATGCTCAT ATATATTCAT CATCATAATA CACACATAGA TACATATATT GTGTTTTTCT GTCTCACTGT
AACTTTCTTT CTGTCTGTTG CCTGAAGCAA TGAAAGTGGG AGAGTCCAAC CATGCGAACG CTTTGTGATG CTTGTGAGAG
TGCGGCGGCT ATAGTTTTCT GCGCCGCTGA CGAGGCTGCA CTTTGTCGTG CTTGCGATGA GAAGGTGTTT TTTTTTTGTC
AATACTTTCT GGATCTTCTT TGTGATATGT TGTGCTCATT ATCGATATTG ATCTGTGTTT TGTACTTGTG TTTTGGTGTT
TCGTTTAGAT CACTGACTTG AATGTTATGA TCTGGTGTTT ATTGAAAAAT ACGACACGGT CACTATATTT CATTGGTAAT
TTAAGAATAT TGAAATCCTG GGAGAAACTT GGAGAAGTTC ATGTATGTAT GGGGTAACGA ATTGAAGGGC TTGAAGGTTG
ACCCTCTTGT AGCTTCATAG ATATGCTTCG ATTCGATTTG ATCTTGTTGC GGTGTTGTGT GAATTGAAAA TCTGAGTCTG
TATTTTACTT TTGTTTGGTG TTGGTTTTTG TGGTCAACAA CTTTGAACCA AAGGGTAGAA GATTAATGTT TTGGAGCTGA
CAGGTTCACA TGTGCAACAA GCTAGCAAGT AGACATGTGA GAGTTGGTCT TGCAAGTCCA AGTGATGTGC CACGGTGTGA
CATATGTGAG AATGCACCTG GTAGGTGGTT TCTTCTTTCT ATCCTTATGG TGTTCCTATG ATGCTTATTG TTTATATGTG
TTTACCCTTT CAATCTGGAT GTAGCTTTCT TCTATTGTGA GACAGATGGA AGTTCCCTTT GTTTGCAGTG TGATATGATA
GTTCATGTTG GAGGTAAAAG AACGCATGGA AGATATCTTC TGTTCAGGCA AAGAGTTGAG GTTAGTGAGT GAACTGGTCT
TGATATGTTT ATTGACTAAA CCCACCAAAA TTTTGTATTA AGATTGTAAG TTTGGCTGTT TTAATCTCTA GCTTTGCACA
AGGCTCACTT CAGTACCTAA CTTTATAAAA TGTTATTCGT TTTAGTCCTT AATGTTGGTG AAGAAAAACT GAAATGAATA
TATTTTACAA AGTCAAGGAT TAAAGTGACC AATGCTTACA ATCTTAGGGA TTAAACTGGG GTTTATTTAC TATTGGGTTT
CCTTAAAAGG TGTAATAATG TCTCCTTGTT CCACAGTTTC CAGGAGACAA ATCTAGTCAT GCTGAAAATC CAGGTTCACA
GCCATTGGAA CCTGGTGAGA GTAAAAGAGG ACAAAATCAA CTTCCCAAAC TAAAAATGGG AGAGAAGCAG CACAATCATG
TGATGCCTCT GCTTCCAACA CCAGGATCTG CTGCTGATGG GCATACCAAG ATGGAAACAA AAATGATTGA TTTGAACATG
AAGCCTAATA ATAGATTACA TGAACAAGCA TCAAATAATC AGGTTAGAGT GCATGGGAAG TGGCTTTTGT CTTCCTAATT
AGAAATTTCT TTTCAAGTAA AGGTGTGTTT CACATAAATC AGATATGCAA ATACTTGCAA GGTAAAATTG TTAACCCTTT
TAGTGCAAAC CCATCTCATT TAAATTGTAA TTAGTGGTAT TAAATCCATT CCTCGTGCAT TAAATATAGT AAACTTGTTC
AAATAGTTTT GATTAGGATA TGGAACTAAT TGAAATGTCA TGTGATGTGT TTGTTAAATG AATTTATCTT GGGGATCAAT
TTCTGGCTTT ATTTGAAGGA ACATTTTACG ATTCGCCTTC ACAGCTACAA TCTGAAGAGA TTAACATTGC AAGGAAAATA
TTGTTTTGTA CTTTTAATTG TGGGTTTGAA AAAGCTTCAT ATGCGAACCA AAAAAACTTG TAATTTGTTC TGAAGCAGGT
ATTCAGTAAA CTGTCATAAA ACTTAAAACT AAGTGTGGTT GAAGAGTTGA TCTGAACTAA AATTTCTACT AATCACATCA
TGTGCAATGA TTATAATTCT CAGGAATGCT TTCTCTCTTT CTTTGCAGCC ATAAATGGTA CAACCAGGCA ATGCAGTTCT
TGCAGGATTC TACACCAAAA ATATAGTACT GGCAAAAGCT TCTCATGCAT GTTAATGACA AGGATGACAA AGATATTCTG
TTAACATCCT ATTCTGGCAA ATGAGGCACA GAAATCTTTT GAGGAGTTTA TTCGTCTATG TAGAACTTAA TTTGGTAGTT
CAACACAACA TATTTGTATT GCAAAGCATT GTTGATTGTA TATCTATATG ATCGCTTCCA ATGAATTGCG TGTTGCTGAA
TTTTGTTTTT GGTTTCGGTT TCTGTGCTAC TACGGCTCCC CACAAAATTC AAGGGGGAAG AATTTTATTT TTCCAAATAA
AATGAGACAT ATAATTATAA ATCATCGAGG TGTTAGCAAA TTGGATAGAA TCCGTGTAGA GGAAAAAAAA 

>Vigan.10G155500.01
CCTATTTAAA ATGACCAATC TCTAGCCACA TACTTAAAAA CAGTTGTTAT AAACTCATTA CAGGTTTTAT GTTATAATCA
ATATTTGCTT TAAAAGTTGC CACTGTTCTA CATTACTGTT TCATGCATCT GTATACATCT CATCTTTACT AAATGGTAGC
ACACACTAAA CAAAAGCAAT CCAGAACAAA CTCACTTTAT TCTCTATGAA AAAAAAAAAG ACATATAAGG TTACTGATGG
GAAATTCCCA ACTTTTTAAA GAGTATCAGC TAAAATGTCA GGCTAATTTG ACAGAGCTTC CGAAACATGT GATGATGTAA
AGCAATAATA GAGGTGACAA GCTGTAAACA AATCTTGAGT CCCCTTTTAT TTCTGTTTGG GAAAGTTATT CTAGGAACAG
TGAAAATTAC CATTTGATCA GTGTCTCTTG TGCTTCTGAT TGTGGACTGT AAACAGTATC TAAAGTTCTT TTTTTTCTCG
GCCAACTACT CATGCAAAGA TGTTCAGACC TGTTTGATGA GTCGTCCATT TATTAACAGT ATAGATATTG ACGAATCCAT
TGAAATCCAC CATCCCTGAA ATGCAAAAAA GTTGGTCGCA CTACAAATCT TGGCAATATT ATGTGTCTCT TTAAAGGGAA
GTTGGGAGAT AAGAGATAAC CTACTTGATT CATTCAAAAG TCTTGTTTTT ATAAATCCAG TAAAACTCTA AAAAAGCAAA
CGTACGCATC TTATAGATTT GTAATAAGTG TGTATGAGAA TTTGGGTGTA GAGTAGATAA AGAAGTTAAA GTAAGAGTGA
GCAGGAAAAT GGATAGAAGG GACAGGTAGA GAAGAAGATG GAAGATTCAT GGCTTTGGTT GTTGTGGCTG AAAAGGAAGG
AGAAGTTAGG CAGAGGCTAG GAAGGATGAA AGAAACAAGA AACATGGGAA GGATGTGGGT CCCATGTCAG ATAATTAATT
GGTGGGTGAG AATGAAGCGT GAGTTGCTGT CAACTCTGCA TTGGCTTTGA ACTTGTGGCT ACGAAGTAAT GTTTGAGGCC
AACAGAGTTG ACAAACACTC ATTTATTGTG TCTTTGCAAA GTTTTGGAAT CAACCATCAA GGTCCCCCCA CTCCTTCAAA
ATCCTTTCTT TTATCCCACA CTCTAATCAT AGTCCTTCCC CATCATCATC TTCATCAACC ACCACCTCCA CCCTCTTTCA
CAAACAACAT AACATTCGCT GAAAAACAAA ACTATCATAC CCACATGGAT TTGGTGAACA CCTGTCTTCT TCTCTGCCTC
CCTTCTCTTT CTATGCTCAT ATATATTCAT CATCATAATA CACACATAGA TACATATATT GTGTTTTTCT GTCTCACTGT
AACTTTCTTT CTGTCTGTTG CCTGAAGCAA TGAAAGTGGG AGAGTCCAAC CATGCGAACG CTTTGTGATG CTTGTGAGAG
TGCGGCGGCT ATAGTTTTCT GCGCCGCTGA CGAGGCTGCA CTTTGTCGTG CTTGCGATGA GAAGGTTCAC ATGTGCAACA
AGCTAGCAAG TAGACATGTG AGAGTTGGTC TTGCAAGTCC AAGTGATGTG CCACGGTGTG ACATATGTGA GAATGCACCT
GCTTTCTTCT ATTGTGAGAC AGATGGAAGT TCCCTTTGTT TGCAGTGTGA TATGATAGTT CATGTTGGAG GTAAAAGAAC
GCATGGAAGA TATCTTCTGT TCAGGCAAAG AGTTGAGTTT CCAGGAGACA AATCTAGTCA TGCTGAAAAT CCAGGTTCAC
AGCCATTGGA ACCTGGTGAG AGTAAAAGAG GACAAAATCA ACTTCCCAAA CTAAAAATGG GAGAGAAGCA GCACAATCAT
GTGATGCCTC TGCTTCCAAC ACCAGGATCT GCTGCTGATG GGCATACCAA GATGGAAACA AAAATGATTG ATTTGAACAT
GAAGCCTAAT AATAGATTAC ATGAACAAGC ATCAAATAAT CAGGTTAGAG TGCATGGGAA GTGGCTTTTG TCTTCCTAAT
TAGAAATTTC TTTTCAAGTA AAGGTGTGTT TCACATAAAT CAGATATGCA AATACTTGCA AGGTAAAATT GTTAACCCTT
TTAGTGCAAA CCCATCTCAT TTAAATTGTA ATTAGTGGTA TTAAATCCAT TCCTCGTGCA TTAAATATAG TAAACTTGTT
CAAATAGTTT TGATTAGGAT ATGGAACTAA TTGAAATGTC ATGTGATGTG TTTGTTAAAT GAATTTATCT TGGGGATCAA
TTTCTGGCTT TATTTGAAGG AACATTTTAC GATTCGCCTT CACAGCTACA ATCTGAAGAG ATTAACATTG CAAGGAAAAT
ATTGTTTTGT ACTTTTAATT GTGGGTTTGA AAAAGCTTCA TATGCGAACC AAAAAAACTT GTAATTTGTT CTGAAGCAGG
TATTCAGTAA ACTGTCATAA AACTTAAAAC TAAGTGTGGT TGAAGAGTTG ATCTGAACTA AAATTTCTAC TAATCACATC
ATGTGCAATG ATTATAATTC TCAGGAATGC TTTCTCTCTT TCTTTGCAGC CATAAATGGT ACAACCAGGC AATGCAGTTC
TTGCAGGATT CTACACCAAA AATATAGTAC TGGCAAAAGC TTCTCATGCA TGTTAATGAC AAGGATGACA AAGATATTCT
GTTAACATCC TATTCTGGCA AATGAGGCAC AGAAATCTTT TGAGGAGTTT ATTCGTCTAT GTAGAACTTA ATTTGGTAGT
TCAACACAAC ATATTTGTAT TGCAAAGCAT TGTTGATTGT ATATCTATAT GATCGCTTCC AATGAATTGC GTGTTGCTGA
ATTTTGTTTT TGGTTTCGGT TTCTGTGCTA CTACGGCTCC CCACAAAATT CAAGGGGGAA GAATTTTATT TTTCCAAATA
AAATGAGACA TATAATTATA AATCATCGAG GTGTTAGCAA ATTGGATAGA ATCCGTGTAG AGGAAAAAAA A

>Vigan.10G155500.01
ATGCGAACGC TTTGTGATGC TTGTGAGAGT GCGGCGGCTA TAGTTTTCTG CGCCGCTGAC GAGGCTGCAC TTTGTCGTGC
TTGCGATGAG AAGGTTCACA TGTGCAACAA GCTAGCAAGT AGACATGTGA GAGTTGGTCT TGCAAGTCCA AGTGATGTGC
CACGGTGTGA CATATGTGAG AATGCACCTG CTTTCTTCTA TTGTGAGACA GATGGAAGTT CCCTTTGTTT GCAGTGTGAT
ATGATAGTTC ATGTTGGAGG TAAAAGAACG CATGGAAGAT ATCTTCTGTT CAGGCAAAGA GTTGAGTTTC CAGGAGACAA
ATCTAGTCAT GCTGAAAATC CAGGTTCACA GCCATTGGAA CCTGGTGAGA GTAAAAGAGG ACAAAATCAA CTTCCCAAAC
TAAAAATGGG AGAGAAGCAG CACAATCATG TGATGCCTCT GCTTCCAACA CCAGGATCTG CTGCTGATGG GCATACCAAG
ATGGAAACAA AAATGATTGA TTTGAACATG AAGCCTAATA ATAGATTACA TGAACAAGCA TCAAATAATC AGGTTAGAGT
GCATGGGAAG TGGCTTTTGT CTTCCTAA

>Vigan.10G155500.01
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLASP SDVPRCDICE NAPAFFYCET DGSSLCLQCD
MIVHVGGKRT HGRYLLFRQR VEFPGDKSSH AENPGSQPLE PGESKRGQNQ LPKLKMGEKQ HNHVMPLLPT PGSAADGHTK
METKMIDLNM KPNNRLHEQA SNNQVRVHGK WLLSS*