GBrowse Details

Vigan.10G119200.01

Basic Information:
Name: Vigan.10G119200.01
Multiple alignment
Variant Information
Position: Chr10:17341232..17345480 (- strand)
Length: 4249
Functional Information:
Description: Similar to ATP-dependent RNA helicase Dbp73D isoform 1. [XP_007040745.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:61.39,35.92,11.34,14.26,27.53,19.66,37.45,9.00
Arabidopsis thaliana homolog: AT1G31940.1
Automatic updates:
Name: NM_001254237 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100791210 (LOC100791210), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:17341232..17342204 (- strand)
Length: 973
Type: three_prime_UTR
Position: Chr10:17342205..17342414 (- strand)
Length: 210
Type: CDS
Position: Chr10:17344490..17344669 (- strand)
Length: 180
Type: CDS
Position: Chr10:17345000..17345065 (- strand)
Length: 66
Type: CDS
Position: Chr10:17345066..17345480 (- strand)
Length: 415
Type: five_prime_UTR

>Vigan.10G119200.01 class=Sequence position=Chr10:17341232..17345480 (- strand)
GTTCAGCTGA TTCCAAAGCA TTATTATTAT TACATTATTA TTAACTTCCC CAAACGAGAA ACTCCTCGCA ACACATCACA
GCACAACGCA ACAAACCCAA CACCATCATC GTTCACGCCA AGTAAAACGA TTCCTCTCTT CTCCACCTCA ACCTTTCTCT
CTCTTCGTTC TCTTTATTCT CTCTCTCCTT TTTCTCTGTG GCTTTCCAAT TCCAACACCA CCTGCTTCCG GGTTGCAAAA
CTTGCCCCGG ATCAGGACCC TTCTCATGCA ACCACTGATT CAAGTGTTTT TTGCCTCCCC CAGACAATAA CTATAGATAG
CTAATAGACC TTTCGCTAGA TAATCACGCA AACGTCAAAA GAAACGTTTT TTCTTGGTGG GTATTGATTC TTTTTGAGGT
GGGGAGAAAA GAACCATGGT GGGTATATTT TCAAGATTCT CTGTTGGAAG GAATGTCCAC CGACGTACTC AAAGTGCTTT
GGTAAGAGTT CTTTTTTTTC CTTCTAATGA ACCCTTTTTT TACAATTCAA ATTCAATGAT TTTTATTGAT TTTTTGTTGG
GAGTGGACTT TGATTGACCA GTAAATGCTG CTTAGGCCTA GTTGTTTTTT TTGTGACATT TGATTACTCA AATTAAATTT
AATGATTATA AACCATGTTT TTGTTATTGC AATAATCAAT ATAACTGTTC ATGTGATTTG CTGTTGGATT GGAGAAAATT
AGGAAGGCCT ATGCGATTTG GTATATAATT TTGTTTAATT GGTGGCATGA TCTTAATATT GTTTCTTGTG CGTTGACTTC
ACATGTTGCA GGATGAGAGG GAAGTGATGC CCCCAAACTC AGAGGCTGTT GCTGCAGTGG CGAGTGCTGC AACTGCCACT
TCTCATGGAA TTGAAGTGGC TGTGGAGTTT AAGCCTGTTG AACATCCAAT TGAACCTCTT GACAGTGATA GGCCAATTCA
GTGCCCGTTG CCAGAGCCAT CTATTCTTAA TGTAAGAATA ATATCTGGTT GTCTTATGGT ATATTGCAAA ATTGATCATT
TGAACTGTGG AATGATGCAC GTCTGTTTTG CTACATTAAC GTAATTAATT TCTCTCACTG TGCTTCATTG TAAAATCTAT
GTTTCAGAAT AATATAGGCG TGCTCCCATT TACATGCAAC AGTTTAAATT AATTCTATCA AAGTCAATCC TGCCAACTTT
AGGACGAATA TAAGCTGTTT GGATGTATGG TATCAAACTG CACATTGTTA TCATAGTCAT TGTTATTGTT GTTGTTATTA
TTTGAGTTTG ATTTTGATAT AGTGTCAATG TTAGGTTTTT ACTCTTTTAA CCAATATGTA GCACCTAAAT ATGACAATTG
ATGATTGAAT ACCAATATTC AGTGTACAAA TAATTTTTTA TATCATTATT ATTATTTAGC TCAATGAAAG TATGACTTGT
TTTGTCAAGC ATGGAATCTG GTTGTGTTGG ATACTAGGCA TTCTTTTTAT TTAATTTATT ATGAGGAAGA AACTATTTTT
AGCATCTTTT AGAGAACACA TTTTTTTAAA ATTATTTGTT TAGGATTAGG CTAAAACAAA AATATTTCAA ACTCAAACAA
ATTTGTTTGT TACCATCTGC ATATCATTAT GTTAAACTTG TTTTGCATTA TTAGCTTGAA GAATGAGAAG CAAATATGCT
GTCCTTTTTA ATTAGCAAAC AGGTTACTTG TTTAAACATA TAATAAGTAT CTTGATATTC AAATAGGTTG AAAAAAATAC
CATTTCAACT ATTCTTGTAA GACTATTTAT AAAAATTTAT TTTATGTGAG GTGAATTTGA TTGAGAAAGA GAGAATTAAA
AAGGTATGGA AATAAGATAT ACTCTACAGC TAAAAATTAC AGCAAAAGAG AAAAGAACAT TAGCTAAGAG CATTTGTGTG
AAACAGCAAC CCGTCTCTCT GAATATGTAT GAAAGACATC CCCTTAAAGA GACCTTTTGG TATTACTCCA CAAAGACACT
AGTTGAACTG CTCTCTGAAA GTAAATCCAT GGGTTGATCT GACCAGTGAA AATTCTTGCA TTTCTTTACA ATCAAATAAA
CCAACCTACT GCCAACTGGG AACACCTCCA AATCCTTTTG GCATCTCTAT TGATGCAACA AGCCTCTAAA ATTATTACAC
AACAAAGATT AAAGATGCTT AGGATAGACC CATCCTTCAC CTGCCACACC AAGCAAATGG GAAGCTGATA GAAACGGGAT
CAGAATAGCT ACTAGTCTAT GCTAGAGATC CTGGCCTTTC CCTAGCTACT ACTCTATTGT GGTTACCTTT CAGAAGTCTT
TCTGAACTCA ATCCACACTT GATACAAAAA TCATAAGATA AAGATGTTTG TCTAATTTTG AGCATGCCAG CAACTATCTA
CAAAGCTCTA ACACAATTGC TAAATATGGG ATTTGGGCTT TAGAAGAATT CTTTGGGTTA TTTCCTACAA CAGCTCTCTT
TATATTTTCT ATATTAGTTT TTCTGTGCAT CCATGTGAAT ATGATTGCAA CCTATTATTG TCACTACAGC CAGTTATGTG
TTTTAGTGTG GAATACACGT GAGGGGATAG CTGGGGTTCC ACTTAACTTG GTAAGGTGGT TTTGGTAATC AACTCATCTT
TCCTCTGGGT TTCCTGTTCA TTGTATACCT TCAATAAATT TACAGTTGTG GTAGAGCAGC TTTATTTTTG CCTTGGTTTG
AAAATAATGT GGTGTAGCCA GTCACTATTT TTTGAACCTT TAACCGTTTC TAACTTCAAA TCTGAAGATC CAGGGATGGT
TGGAAGTTGG CCATTACAAA AATTATCATC AGTAGACATC TCCACCTGTA ATTTTACCTT CTGCTATTTG TTGGTAATTA
CGGTTAACCT TTTGAAAACC AAAATTGTAT TTTGAAAAAG AAAAAGAGTG TAGTTAAGGA CCCGAGGAGG TTGTACATGC
ATGAATGCCT TTCTTTCCTG TTTGTCAAAT CTGAAGAAAA AAAAAGGAGG GTTTCTTTCA TTTATTGGAA ATAATAGGAT
TCTAAAAATT TGTTCCTCAA TGTTAGGATG GAAGAATATG GAAAGAACGA GTTTCTGCAA CTGTGCGGAG AAGAGGGGAC
CTGCCAGTGA TGAAGGAAGG GGGAGCACTT GAATCTGAAG ATGCTGGAAT CAAGCCCCGG ACATCCCGGT CGAATAGAAT
GATCCTACCA TCTGTCAGTG CTCCGGAGCA TAATCTTTTA AAACTTCTTG AAGAGTGTAA TGCTTCAGGC ATCTAAACCG
GTATTGACTT TAATGTTGTA TTTTGTTGAA CGTGACACCC CTTCATCTCT TTTTGCTGTT CTTTGCTATT TCTATATATT
ATCCGGCTCA AATATGTATA TTCAAATGTA TACTCATAAA AAGTCAAGTG TGGCACATTT TCGCAATCTG CTTTATATGA
AGACTCTGGT AATATGCTTC AAATTTCTTC TTTGGATCCA CTGTTATTAA GCTTATTTAT GCTTTCCTTT GCAGCATGTA
CCCTTGATGA ATACCTGAAT TTACTTAGGC TATGCATGAT AGAAGTTAAA ATCAGAGGAA TGGAGAATTA AGATTGAAAG
TTTTCTATGT GTCAAACCAT TGTTCGCATT AAACTACATG TGTATTCTTC TTTCTTCTTA AACCGCCAAG CACAACATTG
TGTCACAATT TAACAAAAGG TGAAATGAAG AAACTCTTTG TTAACCTATA TTCATTCTAT CTATATTTAG CTCATTCCTC
TCATCACTCT AAAACTCTGC TTTAAAAAAT CCTTGAAACG ATTGAAATAA TAAGCTGATT TGTAATAAGA TTCAAAACCA
TGATCAGAAT GATATTTTGG TTAAACCTGT TCCCTTTTAT ATGGAAGGAG CTTCATATCA AATGCTGTTC TTTCTATTGC
TCCAGCTCAA AATGCAAGCA ATGACTAGAA TTCTCTGCTA GTTCATTTTA GGAAACAGGC TTCTCTCTGA ATCCTGTGCC
TCATGCTTGT CTTGCCTTGC ACGGCTAATA TTCCAAAATC AGCTTTGCTA GATACATTAA TGCAGTAAAT AGGTTAGGGG
AGTGTATCTA TAGGTATACT CGTCAGTTAT AATCAACAGG CATCATTTTT CACTGGCTAA GGAATGTATG AAAGAGTTAA
CAATTTAGGG AATCTGTATA TTCTCATAAA CAAGTTATTT TTTGACTTGT TTAAAATATA TCCTTTTGTC TATGAATGAT
GAAGTAGAA

>Vigan.10G119200.01
GTTCAGCTGA TTCCAAAGCA TTATTATTAT TACATTATTA TTAACTTCCC CAAACGAGAA ACTCCTCGCA ACACATCACA
GCACAACGCA ACAAACCCAA CACCATCATC GTTCACGCCA AGTAAAACGA TTCCTCTCTT CTCCACCTCA ACCTTTCTCT
CTCTTCGTTC TCTTTATTCT CTCTCTCCTT TTTCTCTGTG GCTTTCCAAT TCCAACACCA CCTGCTTCCG GGTTGCAAAA
CTTGCCCCGG ATCAGGACCC TTCTCATGCA ACCACTGATT CAAGTGTTTT TTGCCTCCCC CAGACAATAA CTATAGATAG
CTAATAGACC TTTCGCTAGA TAATCACGCA AACGTCAAAA GAAACGTTTT TTCTTGGTGG GTATTGATTC TTTTTGAGGT
GGGGAGAAAA GAACCATGGT GGGTATATTT TCAAGATTCT CTGTTGGAAG GAATGTCCAC CGACGTACTC AAAGTGCTTT
GGATGAGAGG GAAGTGATGC CCCCAAACTC AGAGGCTGTT GCTGCAGTGG CGAGTGCTGC AACTGCCACT TCTCATGGAA
TTGAAGTGGC TGTGGAGTTT AAGCCTGTTG AACATCCAAT TGAACCTCTT GACAGTGATA GGCCAATTCA GTGCCCGTTG
CCAGAGCCAT CTATTCTTAA TGATGGAAGA ATATGGAAAG AACGAGTTTC TGCAACTGTG CGGAGAAGAG GGGACCTGCC
AGTGATGAAG GAAGGGGGAG CACTTGAATC TGAAGATGCT GGAATCAAGC CCCGGACATC CCGGTCGAAT AGAATGATCC
TACCATCTGT CAGTGCTCCG GAGCATAATC TTTTAAAACT TCTTGAAGAG TGTAATGCTT CAGGCATCTA AACCGGTATT
GACTTTAATG TTGTATTTTG TTGAACGTGA CACCCCTTCA TCTCTTTTTG CTGTTCTTTG CTATTTCTAT ATATTATCCG
GCTCAAATAT GTATATTCAA ATGTATACTC ATAAAAAGTC AAGTGTGGCA CATTTTCGCA ATCTGCTTTA TATGAAGACT
CTGGTAATAT GCTTCAAATT TCTTCTTTGG ATCCACTGTT ATTAAGCTTA TTTATGCTTT CCTTTGCAGC ATGTACCCTT
GATGAATACC TGAATTTACT TAGGCTATGC ATGATAGAAG TTAAAATCAG AGGAATGGAG AATTAAGATT GAAAGTTTTC
TATGTGTCAA ACCATTGTTC GCATTAAACT ACATGTGTAT TCTTCTTTCT TCTTAAACCG CCAAGCACAA CATTGTGTCA
CAATTTAACA AAAGGTGAAA TGAAGAAACT CTTTGTTAAC CTATATTCAT TCTATCTATA TTTAGCTCAT TCCTCTCATC
ACTCTAAAAC TCTGCTTTAA AAAATCCTTG AAACGATTGA AATAATAAGC TGATTTGTAA TAAGATTCAA AACCATGATC
AGAATGATAT TTTGGTTAAA CCTGTTCCCT TTTATATGGA AGGAGCTTCA TATCAAATGC TGTTCTTTCT ATTGCTCCAG
CTCAAAATGC AAGCAATGAC TAGAATTCTC TGCTAGTTCA TTTTAGGAAA CAGGCTTCTC TCTGAATCCT GTGCCTCATG
CTTGTCTTGC CTTGCACGGC TAATATTCCA AAATCAGCTT TGCTAGATAC ATTAATGCAG TAAATAGGTT AGGGGAGTGT
ATCTATAGGT ATACTCGTCA GTTATAATCA ACAGGCATCA TTTTTCACTG GCTAAGGAAT GTATGAAAGA GTTAACAATT
TAGGGAATCT GTATATTCTC ATAAACAAGT TATTTTTTGA CTTGTTTAAA ATATATCCTT TTGTCTATGA ATGATGAAGT
AGAA

>Vigan.10G119200.01
ATGGTGGGTA TATTTTCAAG ATTCTCTGTT GGAAGGAATG TCCACCGACG TACTCAAAGT GCTTTGGATG AGAGGGAAGT
GATGCCCCCA AACTCAGAGG CTGTTGCTGC AGTGGCGAGT GCTGCAACTG CCACTTCTCA TGGAATTGAA GTGGCTGTGG
AGTTTAAGCC TGTTGAACAT CCAATTGAAC CTCTTGACAG TGATAGGCCA ATTCAGTGCC CGTTGCCAGA GCCATCTATT
CTTAATGATG GAAGAATATG GAAAGAACGA GTTTCTGCAA CTGTGCGGAG AAGAGGGGAC CTGCCAGTGA TGAAGGAAGG
GGGAGCACTT GAATCTGAAG ATGCTGGAAT CAAGCCCCGG ACATCCCGGT CGAATAGAAT GATCCTACCA TCTGTCAGTG
CTCCGGAGCA TAATCTTTTA AAACTTCTTG AAGAGTGTAA TGCTTCAGGC ATCTAA

>Vigan.10G119200.01
MVGIFSRFSV GRNVHRRTQS ALDEREVMPP NSEAVAAVAS AATATSHGIE VAVEFKPVEH PIEPLDSDRP IQCPLPEPSI
LNDGRIWKER VSATVRRRGD LPVMKEGGAL ESEDAGIKPR TSRSNRMILP SVSAPEHNLL KLLEECNASG I*