VIGGS:Variant information

Chr10:17341232 - 17345480

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
17341672	T	G	50	2083.77	1.00	DOWNSTREAM(\|1331\|\|None\|Vigan.10G119100.01), UPSTREAM(\|3909\|\|None\|Vigan.10G119000.01), UTR_3_PRIME(\|533\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17342012	A	C	69	2839.77	1.00	DOWNSTREAM(\|1671\|\|None\|Vigan.10G119100.01), UPSTREAM(\|4249\|\|None\|Vigan.10G119000.01), UTR_3_PRIME(\|193\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17342364	C	T	48	1722.77	1.00	DOWNSTREAM(\|2023\|\|None\|Vigan.10G119100.01), SYNONYMOUS_CODING(SILENT\|ggG/ggA\|G99\|None\|Vigan.10G119200.01), UPSTREAM(\|4601\|\|None\|Vigan.10G119000.01)	Vigna nepalensis
17342553	C	A	56	2274.77	1.00	DOWNSTREAM(\|2212\|\|None\|Vigan.10G119100.01), INTRON(\|\|\|None\|Vigan.10G119200.01), UPSTREAM(\|4790\|\|None\|Vigan.10G119000.01)	Vigna nepalensis
17342636	G	A	60	2384.77	1.00	DOWNSTREAM(\|2295\|\|None\|Vigan.10G119100.01), INTRON(\|\|\|None\|Vigan.10G119200.01), UPSTREAM(\|4873\|\|None\|Vigan.10G119000.01)	Vigna nepalensis
17343009	T	A	51	2085.77	1.00	DOWNSTREAM(\|2668\|\|None\|Vigan.10G119100.01), INTRON(\|\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17343189	G	T	58	2444.77	1.00	DOWNSTREAM(\|2848\|\|None\|Vigan.10G119100.01), INTRON(\|\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17343312	A	G	41	1692.77	1.00	DOWNSTREAM(\|2971\|\|None\|Vigan.10G119100.01), INTRON(\|\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17343682	T	C	56	2287.77	1.00	DOWNSTREAM(\|3341\|\|None\|Vigan.10G119100.01), INTRON(\|\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17343823	C	G	66	2671.77	1.00	DOWNSTREAM(\|3482\|\|None\|Vigan.10G119100.01), INTRON(\|\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17344443	T	C	65	2713.77	1.00	DOWNSTREAM(\|4102\|\|None\|Vigan.10G119100.01), INTRON(\|\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17344890	G	C	46	1985.77	1.00	DOWNSTREAM(\|4549\|\|None\|Vigan.10G119100.01), INTRON(\|\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17344975	T	G	55	2094.77	1.00	DOWNSTREAM(\|4634\|\|None\|Vigan.10G119100.01), INTRON(\|\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17345048	T	C	48	1766.77	1.00	DOWNSTREAM(\|4707\|\|None\|Vigan.10G119100.01), SYNONYMOUS_CODING(SILENT\|tcA/tcG\|S6\|None\|Vigan.10G119200.01)	Vigna nepalensis
17345160	G	C	63	2748.77	1.00	DOWNSTREAM(\|4819\|\|None\|Vigan.10G119100.01), UTR_5_PRIME(\|95\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17345173	A	G	58	2595.77	1.00	DOWNSTREAM(\|4832\|\|None\|Vigan.10G119100.01), UTR_5_PRIME(\|108\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17345403	T	A	46	1735.77	1.00	UTR_5_PRIME(\|338\|\|None\|Vigan.10G119200.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
17341691	A	AT	52	1499.73	0.98	DOWNSTREAM(\|1351\|\|None\|Vigan.10G119100.01), UPSTREAM(\|3929\|\|None\|Vigan.10G119000.01), UTR_3_PRIME(\|513\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17344185	CAAA	C	52	2281.73	1.00	DOWNSTREAM(\|3845\|\|None\|Vigan.10G119100.01), INTRON(\|\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17344220	A	AATGATG	51	2301.73	1.00	DOWNSTREAM(\|3880\|\|None\|Vigan.10G119100.01), INTRON(\|\|\|None\|Vigan.10G119200.01)	Vigna nepalensis
17344870	A	AAAG	47	2123.73	1.00	DOWNSTREAM(\|4530\|\|None\|Vigan.10G119100.01), INTRON(\|\|\|None\|Vigan.10G119200.01)	Vigna nepalensis