GBrowse Details

Vigan.10G118800.01

Basic Information:
Name: Vigan.10G118800.01
Multiple alignment
Variant Information
Position: Chr10:17325479..17331869 (- strand)
Length: 6391
Functional Information:
Description: Similar to Uncharacterized protein. [M5WUH4, Prunus persica]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Proteasome component (PCI) domain (IPR000717)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:72.03,89.93,34.76,26.20,44.26,47.93,45.64,27.86
Arabidopsis thaliana homolog: AT4G19006.1, AT5G45620.1
Automatic updates:
Name: NM_001253255 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 26S proteasome non-ATPase regulatory subunit 13-like (LOC100804455), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254032 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 26S proteasome non-ATPase regulatory subunit 13-like (LOC100793480), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:17325479..17326184 (- strand)
Length: 706
Type: three_prime_UTR
Position: Chr10:17326185..17326370 (- strand)
Length: 186
Type: CDS
Position: Chr10:17327623..17327722 (- strand)
Length: 100
Type: CDS
Position: Chr10:17327824..17328020 (- strand)
Length: 197
Type: CDS
Position: Chr10:17328170..17328250 (- strand)
Length: 81
Type: CDS
Position: Chr10:17330208..17330654 (- strand)
Length: 447
Type: CDS
Position: Chr10:17331675..17331824 (- strand)
Length: 150
Type: CDS
Position: Chr10:17331825..17331869 (- strand)
Length: 45
Type: five_prime_UTR

>Vigan.10G118800.01 class=Sequence position=Chr10:17325479..17331869 (- strand)
GTTTCTTTAT TTCGGATTTT GGGTTTCTCT CTTGCGTCAA TCGTAATGGC TGCTCTGCAA TACTTGGAAT CGCTGCGCAA
CGCGCACCCT GAGCTCGCCG AATGGTACAA TTCGCTCGCG GATCTGTATC AGAAGAAGCT CTGGCATCAA CTCACCCTCA
AGCTCGAGCA GTTTGTCGCA CTCGCTGTTT TTCAGGTTCC ACTCTTCTTC TTGACTTCAT TTTTTATTTC GCTCTTTGCA
CTCGTAATTG ATGGAAAGCT GTACTGTACC TCGGTTTGTT TTGTTTCAGA AATTGTTAGG TTTAGGTTTA ATTTGTTTTT
GTGTGTGTAG TTGTTGGTTT GAGCTTGATT TGGGAGTTAG GGGTGATGTT GTCTGGAGAG AGTGATTGTG TTGCTGTTAG
GGTTTTGTTT TGGGGGGCTT GAATTGTTGT GTTTGGAACG GTGGGAAAGA TGGGAACTTT TTTCACAGGG ATTGCGTTTG
GATTTCGTTA GGTATGGAAG ATGTTGGGCG GGGCACCTGG ACGGGGTTGT TATAGGATTG ACATCTTTGA GCTGTGGGAT
TTGTAAAATT AGGGTTCTGC TGGAAATTGA ATTTTTGGGG ACCTGATTTG GAGTCCAGTT TTATGGTTTT AGTTATTTAG
ATTTTGAGGA GAGTGGTGAG TGATGATTTT TAGCGACCTG GTATATAGTG GTATAACGTG TGGATCATGA GATTGGTAAG
TCAAGGACCA TGAAGATCAG AGGGCAGTGT CGTTAGGATG GAATGGAACT TTAGCCACAT TGGACTGAAT GTGGATGTTT
CACTTCAAAC AAGATCAAGC ATGCTCTGTT AAATTTGGGA ATGGCTTAAG TAATTAAACT GAATGCAATT TTATTCTGTC
GATGCCAATC AAGAGGTTGA AATGGTAATT CCCCCCTTGC ATGCTCGGTG GCATTATTTT GAGTCGGGAT CTTTGCATCA
AATATTTAGG TCATTAACCT GTCAAACTTT TATATCACAT CATTGGCTGG AAGCAGCCAG AAGGTAAGAC CAAGTTTATT
CATGGTACTC AACCATTAAC GATTATGGTT GATTCATTCG TTATGTTAGT TTGTGCGTAT TGCTATTTCT TTCTGCTTCT
CATATAGACA AATACTCATT TCAGGTATGC GTGTGTAGTC TTATTATAAT TTATATTTCT TTTGTTTCAT AAATGGTTAT
TACTTAAATT TTCAGGCTGG TGATGCGTTG ATTCAATTAT ATCACAATTT CATCACAGAC TTCGAGACTA AAATCAACCT
TCTGAAGCTT GCACATTTTG CTGTTATAGT TTCTCGGCAG TATTCTGAAA AGGAAGCTGC TGTTGGTTAT CTTGGAGGGG
TCATTGAGAA GTTGCAGGCC ACTAGAGAGC AGCGCATAGA AGAACCTATC CTTTACATTA AGATGCAAAT AGCAATATTC
AAGCTTGAGC AAGGTGACCA GAAGGAATGC AAGAAACTCC TGGAAGATGG GAAGACTACA CTTGACAGCA TGACAGATAT
TGATCCATCT GTATATGCTA ACTATTACTG GGTATCATCT CAATACCACA AGACCCGCCA AGAATTTGCT GAGTTCTACA
AAAGTGCCCT TCTCTATTTG GCATACACAT CAGTGGAGTC TCTATCAGAA TCATTTAAGC TGGTGTGTCC TCACAATTGT
TGCAAATTTC CCTTTCTGTT GTCTCAAATT ATGGCTATTT ACTAATACTG GTTACTTTTG AGTCAATTTA TGATTTGTAT
TGCAAAAGGA GACAGAAAGC CAAAAAATCC GCCACATAGA GTGGTTGGCA TAACGGCTTA TGGCAGAACC CCTGTCTGAC
AATGTTTTTA TACATATGCA CACACATACA AATTAAAAAA AAACTGTAGA AGTGTCAAAA GCAACATAAA ACTAAAATTC
ATAACATTCA TCTAAGTCTC AATCTCATGA TTGTAACAAT AGGGCAATAC CAAAGACACA GTGACTCATT GGATGGCAGA
AGCCCTGTCT GACAATGTGT TTGTTTATAC ATATGCACAC ACATACAAAT TAAAAAAAAA AACTGTAGAA GTGTCAAAAG
CAACATAAAA CTAAAATTCA TAACATTCAT CTAAGTCTCG ATCTCATGAT TGTAACAATA GGGCAATACT AAAGACACAG
TGACTCATTG GAAAACAAAT CCTCATCCTG ATCCCCTCTT CTAACCTTAT ATAATCATTC TTCTCATCAT CCAAAGAGGC
ATCGCCTTCA GCTTTTTCTC TTAACATTTC CAAATTAATA TTTGGCAATC CTTCTTCCAT TTCTTCCTTG TCGCTACTAA
TTTCTCGATT CTTTTATTAT TACCCCTTTC CAGTTTCAGA AGCTCCTCCT TTTCCTTTTA TAGAAACTCT GAGATAATGT
TCCATCTTGA CCCTCTTCAT TTGCAAACTG CTTCCTTTTG TTATCCATCA AGCTCCTTAT CTGCAAACAG TGGATGGCAA
TGGATGCCAG ACCTTTTTGA ATTAGGCAAC GCTGTTTGTG ACAGTGCAGC CATGGCAATT CTTTCTGAAT TATGCAAATT
GTCTTTTCAC TTGAACAAAA TATGTAGGGG AGGGGAAGAA GGTAGATTAC AATGATAAGG GACTTGATAA TGGTGATACT
TTCCAAAAGC ATGACTAAGG CTGTTTATTA ATTTACAGTG GCTGATAATG ACAATTAGTG TGGTTTTCTG CACATCCAAG
TGTTGGTATT TAGGAGTGAT ATTTATTCTC TTGAATCACA TTTTGCTACT ATAGAGTTAT ATATATATAT ATATATATAT
ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATAGAAGA AAACCGAAAA
AAAAGATCTT CAACAACTAC AAAAAATAGA TTTCTTGATT TGGCACTAAT TGAATTATTA AAATATAAAA TCTACTTTAT
GAATTATCAG AAACCCTTTT CTCATATTCC GATTTTAATG GATCTTTAGT TTCTAATCCA AAACTAATAA TCTGAAATGT
TAAGAACCTT CATTTTATAT ATATATGTAT ATATATTTAT ATATATATAT ATATATATAT ATATATATAT GGAGCATAAA
TCACGTGGCA GCTGAAGTCC AATTTTATGT TGAGTCTCTT CTCTTGTATT GGCCTGCACT TTAGGACCGC ATTATTTACG
TTAGGAAATT GAGAGTATGG TGTAGCTAAA TTATACTTTG TATGGACTTG GTGAAGTTCT CCTGTTGTAA TTAAAGGTAG
TTGATGTGTT TAACCACTTC ATTTATGTAA TACTTTATCT ATTATCTATT AAATTTTTTA GCTTATTTTA CTTTTAGTTG
GTGGCATCGT CACAACATTG CAAATTTTAT TGTGTCATCC TTAGAAAGAT TAATGTGGAG GAGTTTGAAG ATAGGTTGAT
GCATTTTTTT AGTAAAATGG AAACTTCATC AGAGGTTTAT AAATACATTT AGGTGCATAA TGTTCTATAA GGAATAAGAA
GAGGTAACAC AGAGTTCGTA GTTGTCTATC TCATTTGTGG TTTGTTTCTA TTTATCTGAA GATTTTATAT GAATTGATGT
GCTATTTTTT ATTTGTTAGG ATTTAGCATT TGATTTGTCC CTCTCTGCCC TTCTTGGGGA CAACATCTAC AACTTTGGAG
AGCTACTTGC CCATCCTATA GTGAGTAATT ACATCAAAAT ATTTGGAGCA CCTATTTTCT GAAATTTCTC TGTTTTTATC
ATTTTACTAT GTTGGTTCAC ACACCCTATA CTCTGTTTTG TCTATCATTT TACTACGTTG GTTCACACAG CCTATACTAT
GTTAAACAGA TCAAGAGCCT TCTGGGGACA AAAGTGGAAT GGCTTTACTA TATTCTGCAG GCATTCAATT CTGGTGATTT
AGTGCGATAT CAAGAATTGT GTCGGGTGCA TAATGCTGCT TTAAGTGCCC AACCAGCACT GGTTCAAAAT GAACAGAAGT
TGTTGGAGAA GATCAACATT CTCTGTCTGA TGGAGATTAT ATTCAGGTGT ATACTTTAAT TAGATTGTCA CTGTTGTCAC
CTGTTGAGGT GTATTTTATA TCCTTTTTTA TTTTCATCCC AACTCAACTG ATTGCTGTTG CTTGCAGTCG GCCTTCAGAA
GATCGAACTA TTCCATTGAG TGTAATTGCT GAGCGTACAA AACTTTCTAT AGAGAATGTG GAACATCTCC TAATGAAGAG
CTTATCTGTA AGTTGTATTT GAAGTTCTAC GGAAAACAGT ATAGAAATTT TGTTTGATTT TCTTTGCAAC CATTTAAAGT
AGTACACTTT CAGCCCAAAC ATCTCTGTAA ATGTGAAATA GCTTATGATG TTTTCTTGTT TCTTCTCATT TTTCTTAGTC
TAAATTATTT TTACAAAGGC TTGACCTATA ATGACAGTTA ATCATAGTGT GGTCATAGTG TTTTTTAAGC ATATATTTTG
TTTGGGAATG GAGATATAAA CTATAGTCTA ACCGATATTC TTGAGTCTTG AGCTGTGACA TGTCCTTACT CAGTTGATGA
ATTATGTTGT GTTGGTTGTT ACTCATAAAA TGTATAGTTG ATTATTTTGA GTTTTAGTTA TTAACCGTGA AACATAAGCA
ACACCTAATG TTATACTTTT GCTATGCGGA AACTGACCTC CCATCTTGTG GTGGCAGATT TGTCGAAGTG AGTGGTATGG
CCTGCATGTT CAAACATGTT AAGAACTTTT TATGCTTGAT TTCATTTAAG GCATACATAA CTTCTTGCTA TATTATTGGT
AGTATGTTGC AACACGAGTA TTCTGTTTTG AATTTGATTT TCTATTAGAT AATTCTCTTT AGTTTTCATT GGCAATTAAC
TCTATTTTTA TCACCTGAAA ACTGCTAAAA AGTGGGTTAT AATGGGACGA GTGAATTGGT TGATTTGGAC AGTTTAGTTG
ACATAAAGCG AAGAGGTGTA TTAGGTTAAA TTTTTTTTGG AGCATTTGCG TCTTTTACTA GGTTTTATAG ATCTTGGGAA
TTTCGCACGG AATGCATTAT TTTTGGCTGT TTTGAATTGT TGTTATGTTA ATTTTTTAGT GTTGGTTTCA TCTTGTCCTT
TCATTACCTC CTGAGGCTGC TTTAGACGTG GGATATTTTT TCTCATTCAA ATAAATGTTG TTTTTACATG TATTTCTACA
CCTTTTCAGT GATTAAGCAG AGAATCTTGT TGAATATTGT GGCAGTGGTT TAGAAGTACT TACTTTACTT CTTAACTGAA
TCACAACGAG TACATAAGAC AACTTCATTC TGAATGTATT TATAGTATTG TGTACTTGTT TCAAAGAATT CTAGTCATCC
TTGAATTGTT CTTAGCAAAG CAATCCGAAG TTTCTTTAAT TGAATTTCTG CATTTGAGAA CTTTATTATT ATCATATAGA
TGTTTCAGCA AATAACGTTT TAAAATTTAA AGCTTGGAAG TGAATTTCTT TATTTTCAGG TTCATCTAAT TGAGGGTATA
ATTGATCAAG TTGAGGGCAC AGTGCATGTT TCCTGGGTGC AACCAAGAGT TCTGGGTATT CAACAGATCA AATCCTTACG
GGATCGACTT GACAGTTGGA CGGGGAAAGT ACACACTGCA TTGTTATCCA TCGAGGCAGA AACACCTGAT CTAATCGGAT
CGTGAATTTT CTTTTATTTG TTTTCTGCCC TTTGTAACAA TTTCTTAGGT TAAAGAGAAC ACATCCTAAG GCGACAAAAG
ATGAGGAGAC TTCCAAGTGA CATGGGGCCA ACTTTGTATG CTTTATTTGG GTTACCAGCT GCTTTCTGAG TGATTGCTGG
AAGAGCATCC CCTTGTACTT GGCTGAGAAA TTGTTGGTTC TATGCTTGCA AACTTACAGA CATGGTAACT CATTTCCACC
CTCGCTGTTT TTACGCATTA GAGTAAATGA CAGACTATGT ATCTGGAATT TTCTTTGATA CGGCCATTTT TATTGACTTT
TAGAAGTATT TTTCATTGAA CAGTCCAAAG CATTCATCTT CGTTCTTTTG CCCAATTTTT CCTCACTTTG ATTGGGTGGT
ACTTGCTATG AGCTGAATCT TCCGTCTGTT ATTCCAACTT CTGTTATTTT TGTGCGAGGC TGTTTTCTTG TAACAGCAAT
AAATTGATCA AATGACTCGA ATGGTGATAG AGATGATAAA TGTTAACACT TTGTTGAACA TACCTTTTCC TTTTAGGTTA
AAATTTATTA GGAATTAAAG TTTGTGTTTT ACTAGCATTT TTCATCGAAA TGTTTGGTTG AAATGCTTTG CGGTATGAAT
AAGTGGTCGT TTGCATTAAA AAAAATATTC GTGAAAGAAT GAATGAATTT ATGGTGGATT TGCCATTTCA T

>Vigan.10G118800.01
GTTTCTTTAT TTCGGATTTT GGGTTTCTCT CTTGCGTCAA TCGTAATGGC TGCTCTGCAA TACTTGGAAT CGCTGCGCAA
CGCGCACCCT GAGCTCGCCG AATGGTACAA TTCGCTCGCG GATCTGTATC AGAAGAAGCT CTGGCATCAA CTCACCCTCA
AGCTCGAGCA GTTTGTCGCA CTCGCTGTTT TTCAGGCTGG TGATGCGTTG ATTCAATTAT ATCACAATTT CATCACAGAC
TTCGAGACTA AAATCAACCT TCTGAAGCTT GCACATTTTG CTGTTATAGT TTCTCGGCAG TATTCTGAAA AGGAAGCTGC
TGTTGGTTAT CTTGGAGGGG TCATTGAGAA GTTGCAGGCC ACTAGAGAGC AGCGCATAGA AGAACCTATC CTTTACATTA
AGATGCAAAT AGCAATATTC AAGCTTGAGC AAGGTGACCA GAAGGAATGC AAGAAACTCC TGGAAGATGG GAAGACTACA
CTTGACAGCA TGACAGATAT TGATCCATCT GTATATGCTA ACTATTACTG GGTATCATCT CAATACCACA AGACCCGCCA
AGAATTTGCT GAGTTCTACA AAAGTGCCCT TCTCTATTTG GCATACACAT CAGTGGAGTC TCTATCAGAA TCATTTAAGC
TGGATTTAGC ATTTGATTTG TCCCTCTCTG CCCTTCTTGG GGACAACATC TACAACTTTG GAGAGCTACT TGCCCATCCT
ATAATCAAGA GCCTTCTGGG GACAAAAGTG GAATGGCTTT ACTATATTCT GCAGGCATTC AATTCTGGTG ATTTAGTGCG
ATATCAAGAA TTGTGTCGGG TGCATAATGC TGCTTTAAGT GCCCAACCAG CACTGGTTCA AAATGAACAG AAGTTGTTGG
AGAAGATCAA CATTCTCTGT CTGATGGAGA TTATATTCAG TCGGCCTTCA GAAGATCGAA CTATTCCATT GAGTGTAATT
GCTGAGCGTA CAAAACTTTC TATAGAGAAT GTGGAACATC TCCTAATGAA GAGCTTATCT GTTCATCTAA TTGAGGGTAT
AATTGATCAA GTTGAGGGCA CAGTGCATGT TTCCTGGGTG CAACCAAGAG TTCTGGGTAT TCAACAGATC AAATCCTTAC
GGGATCGACT TGACAGTTGG ACGGGGAAAG TACACACTGC ATTGTTATCC ATCGAGGCAG AAACACCTGA TCTAATCGGA
TCGTGAATTT TCTTTTATTT GTTTTCTGCC CTTTGTAACA ATTTCTTAGG TTAAAGAGAA CACATCCTAA GGCGACAAAA
GATGAGGAGA CTTCCAAGTG ACATGGGGCC AACTTTGTAT GCTTTATTTG GGTTACCAGC TGCTTTCTGA GTGATTGCTG
GAAGAGCATC CCCTTGTACT TGGCTGAGAA ATTGTTGGTT CTATGCTTGC AAACTTACAG ACATGGTAAC TCATTTCCAC
CCTCGCTGTT TTTACGCATT AGAGTAAATG ACAGACTATG TATCTGGAAT TTTCTTTGAT ACGGCCATTT TTATTGACTT
TTAGAAGTAT TTTTCATTGA ACAGTCCAAA GCATTCATCT TCGTTCTTTT GCCCAATTTT TCCTCACTTT GATTGGGTGG
TACTTGCTAT GAGCTGAATC TTCCGTCTGT TATTCCAACT TCTGTTATTT TTGTGCGAGG CTGTTTTCTT GTAACAGCAA
TAAATTGATC AAATGACTCG AATGGTGATA GAGATGATAA ATGTTAACAC TTTGTTGAAC ATACCTTTTC CTTTTAGGTT
AAAATTTATT AGGAATTAAA GTTTGTGTTT TACTAGCATT TTTCATCGAA ATGTTTGGTT GAAATGCTTT GCGGTATGAA
TAAGTGGTCG TTTGCATTAA AAAAAATATT CGTGAAAGAA TGAATGAATT TATGGTGGAT TTGCCATTTC AT

>Vigan.10G118800.01
ATGGCTGCTC TGCAATACTT GGAATCGCTG CGCAACGCGC ACCCTGAGCT CGCCGAATGG TACAATTCGC TCGCGGATCT
GTATCAGAAG AAGCTCTGGC ATCAACTCAC CCTCAAGCTC GAGCAGTTTG TCGCACTCGC TGTTTTTCAG GCTGGTGATG
CGTTGATTCA ATTATATCAC AATTTCATCA CAGACTTCGA GACTAAAATC AACCTTCTGA AGCTTGCACA TTTTGCTGTT
ATAGTTTCTC GGCAGTATTC TGAAAAGGAA GCTGCTGTTG GTTATCTTGG AGGGGTCATT GAGAAGTTGC AGGCCACTAG
AGAGCAGCGC ATAGAAGAAC CTATCCTTTA CATTAAGATG CAAATAGCAA TATTCAAGCT TGAGCAAGGT GACCAGAAGG
AATGCAAGAA ACTCCTGGAA GATGGGAAGA CTACACTTGA CAGCATGACA GATATTGATC CATCTGTATA TGCTAACTAT
TACTGGGTAT CATCTCAATA CCACAAGACC CGCCAAGAAT TTGCTGAGTT CTACAAAAGT GCCCTTCTCT ATTTGGCATA
CACATCAGTG GAGTCTCTAT CAGAATCATT TAAGCTGGAT TTAGCATTTG ATTTGTCCCT CTCTGCCCTT CTTGGGGACA
ACATCTACAA CTTTGGAGAG CTACTTGCCC ATCCTATAAT CAAGAGCCTT CTGGGGACAA AAGTGGAATG GCTTTACTAT
ATTCTGCAGG CATTCAATTC TGGTGATTTA GTGCGATATC AAGAATTGTG TCGGGTGCAT AATGCTGCTT TAAGTGCCCA
ACCAGCACTG GTTCAAAATG AACAGAAGTT GTTGGAGAAG ATCAACATTC TCTGTCTGAT GGAGATTATA TTCAGTCGGC
CTTCAGAAGA TCGAACTATT CCATTGAGTG TAATTGCTGA GCGTACAAAA CTTTCTATAG AGAATGTGGA ACATCTCCTA
ATGAAGAGCT TATCTGTTCA TCTAATTGAG GGTATAATTG ATCAAGTTGA GGGCACAGTG CATGTTTCCT GGGTGCAACC
AAGAGTTCTG GGTATTCAAC AGATCAAATC CTTACGGGAT CGACTTGACA GTTGGACGGG GAAAGTACAC ACTGCATTGT
TATCCATCGA GGCAGAAACA CCTGATCTAA TCGGATCGTG A

>Vigan.10G118800.01
MAALQYLESL RNAHPELAEW YNSLADLYQK KLWHQLTLKL EQFVALAVFQ AGDALIQLYH NFITDFETKI NLLKLAHFAV
IVSRQYSEKE AAVGYLGGVI EKLQATREQR IEEPILYIKM QIAIFKLEQG DQKECKKLLE DGKTTLDSMT DIDPSVYANY
YWVSSQYHKT RQEFAEFYKS ALLYLAYTSV ESLSESFKLD LAFDLSLSAL LGDNIYNFGE LLAHPIIKSL LGTKVEWLYY
ILQAFNSGDL VRYQELCRVH NAALSAQPAL VQNEQKLLEK INILCLMEII FSRPSEDRTI PLSVIAERTK LSIENVEHLL
MKSLSVHLIE GIIDQVEGTV HVSWVQPRVL GIQQIKSLRD RLDSWTGKVH TALLSIEAET PDLIGS*