GBrowse Details

Vigan.10G054800.01

Basic Information:
Name: Vigan.10G054800.01
Multiple alignment
Variant Information
Position: Chr10:5637280..5643296 (- strand)
Length: 6017
Functional Information:
Description: Similar to Cytochrome b5. [G7JZ43, Medicago truncatula]
GO: Molecular Function: heme binding (GO:0020037)
InterPro: Cytochrome b5-like heme/steroid binding domain (IPR001199)
Cytochrome b5, heme-binding site (IPR018506)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.29,7.35,5.63,4.03,4.20,2.51,6.20,4.63
Arabidopsis thaliana homolog: AT1G26340.1
Automatic updates:
Name: NM_001248840 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500537 (LOC100500537), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:5637280..5637483 (- strand)
Length: 204
Type: three_prime_UTR
Position: Chr10:5637484..5637900 (- strand)
Length: 417
Type: CDS
Position: Chr10:5643144..5643230 (- strand)
Length: 87
Type: CDS
Position: Chr10:5643231..5643296 (- strand)
Length: 66
Type: five_prime_UTR

>Vigan.10G054800.01 class=Sequence position=Chr10:5637280..5643296 (- strand)
TGCTCCATCG CTCTCGATTC CTCCCCATTT CCTAACATCC TGGATTCCCT CCCAACAAAA TTTAACATGC CAACCCTCAC
CAATTTCTAC GCCATTCAAG ATTTATCCCA CCACAAAACC AAAGACGATT GCTGGATCCT CGTCGGTGGA AAGGTATCAC
CTTTTCAACT ATTGACTCCT TTTTCTCTCC AATTCCCTAT GTGGGTTTTC TCTTCTTGCT TTCATACCTT TTATTTTGTA
TTAAATCTCT GTATTTGTGC TTATCCCTCT GATAATTTCT GTTCTCTTTT CTTTAGTATT GCTTGCCCTC TGGGATTTTT
TGTTGCTCGA TTTAAATTAT GTCCTATGAT GTTGTTTAAG GTTTTGAACA TTTTGGTTGT TTTTCCAACA TAACTCTCCT
AACTAACTAA CTCAGATGCT TCTCTATCAT CTTGTTCTTA GTGGAACTTT ACATAGCTTT GGTTGGGGAA TACCTCATAT
ATCTTATGTT TTAGTTTTTC TCCCACACTT TTGAAATCTG TAACATTTTG TTAATTCTAC TACTTTAGTA TGCTATTTGC
CAAACATTTT ATAAGCTAAA ACAGCGTAGG AGTGTCCATT ACTGTGACAA ATGAGTAAAT CTGTTACCCT TTTTCTTTGA
TGAAAGAAAG GATTAAAAGC TGTGGTTAGC ATGTAATGAA CTTTGATATT AATTAGTGAC ACAGTAAAAC TCACATAAGC
TTTTTAGCTT ACAATTTTTA CATATATTAG GCAATATTTC TCATACTTTT TATCTTGCAT GATTCAACTG GAAATAAATG
ACTTGAAGTT CTATTCCTGA ATCTGCTGAT ATAACTACCG GACCATGGGT TTGCCAGACA CTAATGTGGT CATCCTATTC
TTCCTTGATG TGTTACGTCA TTCTTGACTT AGATATGTTT ATGTAGTTTC AGAGACTTCT TGCTGGCAAC TGTATCTCTT
CGAAATTATT TTTTCTATGT ATTAAAACAT TAGGCTAAAA ATGTCTCTTC TCAAGGAGGG TATTTCAAAC TGAAAGAAAA
CAATCCACCT ACTTTTCACA CGGATTTTTA CGAGCTTCGT GATAACATGA AGCTTTACAC AGTGTGGCAA ACGTATAACT
GGTAGCTAAA TAATAATACA TGTTTTTTCT TATAAGTAGG TCTTCCAATG CAACTAAATT AAATATATGC AAAAATTAAT
TTCAAATATA CGCAGTTGCC AACGACTAGT TTTCTGAAAT TACATAAATA TATGAAGCTC ATCGAAATTT GCGTGTGTGT
AAAGTAGCTG TATTCTTTTT TGTTAGCTGG TATTCTCTTC TTTGAGGCAA GACATTTTCA TCTTGATGTT TTTCTAAAGT
CTTGTTTCAA TCATATCATC AGATTGAAAA GAAATAATTC TTGAGGGCTT GATTGATCCC TCTCATAATC TTCTATTTAT
AAAAATAAAT TGATATAAGA GTACATGATA ATTAGGGTAA CTTTATACAC ATATAATCAT GATAGGATAA CCTAGACACA
ATATAATCAT AATAAATAGG GTAACCTAGA CACAATATAA TCATGATAAA TAGAATAATC CTAGACACAA TATAATCATG
ATAAATAGGG TAATCCTAGA TATAATATAA TCATGATAAA TAGGGTAAAT ATTCTAACAA TCATCAATGA ATAAACTTGT
TATGAGATGA TTGTTATGGC ATTTCCTTTT CGTTTTCCTT TACAAAGCAT TTGGCCTGGC TTACCTGCTG CTAGGATAAT
AAAGTCTTCT ACCTTTAGAT ATTGGTGTCC ATCATGTGCG TTATATACAG TTAATAAGTA GTGTGTGGAA GCATTTTGCT
GATATAGACA AGTTTTGTTC TGCACATTTT TCTTATTTTG TACTTAGACT GGTGAAAATG TTTTTTTGGA AGTCAATTGA
ATAAAATTTA AAAGTTGATT CTTAATTGTG CCTTTGCCCC ATATCAAAAT CTGGAATTCT GAAGTTCTGA TGTTTGAGTT
TGGAGAGTGG AATCATTTGA TTAAAAAGTT AAAATTGAGC TTGATTGTGG TTTTGCCACA TATTTAAAGA TCAGGAATTC
TGAAAAGCTG ATGTAGTTTT TTCTGTCTGC ATTACAATCC TTTCACTTGT TATTATCTTC TCCATCGTAC AGGAATGTTA
TAATAATTGT ATATTTGGAT TCTTATAGTT TTACAAATGT TATTATGTTT GGAATTTTGA AGTTCTCTGT TTGAAATGAT
TGTATTTCTG GACCTATAAT ATTCAGTGCA AATAAGGTTG TCTAACTCAA TAGTTTAACC TCATGGAGCC TTTGTAGACT
TGGCTCAAAC TCGTAAGAGT TTACCTAATA TAAAAATACT ATTGACTACA TTTGTGCATA TATATTAAAG TTAAATGGTT
ATGCACTTAA GAAGTTGGGA AATAAGAACA ATTGTTCTTC CATTTGGTGC TGAATGGATA ACTAAAGGGA ATAATGTTGA
TCTTGAGCAA CTTCGTGATG ATGGCAACAT GGTGAGCTAC TTGAAAGTTC AAGTAGTCCA ACTTCAAATG CTTTTGAGAT
TGATAATTTG GCTCTTGATG CTAATCTTAA AGATGCCTTT TTATCTGGGG AAGAGCTTGA TTGATGTGAT CATGGATCAT
GAAGAACACA CACTAGGAGG AGTAACTACA AGTAGCATGG CCAAAGTAGG GAGAAGAGAG TCCAAGCTAT CAAGGAGGCT
TCTTGGGGGG TTTTGACTAG AAGCAAGGCT AAGGAGTTGA AGGAAGGGCT TCATCAAGCC AACAAATTAA TAAGGACTAT
TAGAAATAAT AAAGATAGTT TAGAAAGAGT TAATCCTACC CAGTGTTCAT CTCATAGTAT CATTTGGGGT TAATTCTTTA
TAGGTTATAT TCTAGGCAAC CTGTTTGGTT TAAGATTAAC CAAACCTAAG TTAGAATAGG ATTGATATGT GTGCCATATG
CTTTACAATT AGGCTAAAGC TCTCAATCAA AATTCTATAC ATAGGAACCA AGTGAACTTG TAAACACAAC TTGGAAAAAA
ATGACATTGA TGTTGGTTTG AGAAGTGTGT GAATCTTCTT CTACTTAAAA GCTCTATCTT ACGTATATGA TATCATATCC
TAAGTGGCTA GACTCCTGTC ATCATATCCT AAGTGGCTAG ACTCCTGTTT GTTTGCCTAA TCTTGGCAGG CATATCGGAG
TAGGAAGAGT GTGCAACTAT TCCATGTTCC TCTAAGAACT TCAAGATCAG AGTTCAAATT GAACTTACAT GTATGTGATA
GGATATAATG TGTATGATAG GAGGAAACAT ATTAAGAGGT AGTTGTGACC TTTATATAGT TGGGGTGGTG TCCTGGTATG
GAGGGGACTT TTGGATAATT TTGTGATTGA GCTTGTGAAG GGGAAACCCT TGGAGGAGAG AGTGTTCTCC TATTTTATGT
TCTTTTTATT TTATAAATAA AGAATATTAC TCTTCTTTGT CTTTTCAATT CTGGGCTCCT AACCGTATGT TTCCCTTCCT
TTTCCATTAT TGGTTTCTAT TATTTCTTCT TCTCTTCTTT GAAGCTTGCT TGATCAAACC ACTCTTAACG TATAGCAACC
AAGAACCAAT CACTTCTAAA GCATCCAAAT CTAACCTAGA GCAAAATTTT CCTCTTCTTT GTTTCCTTGG AGCTTGAGTG
GATGGTCCTT CATCTTAAGC AAACAGCCAA TGGTTTCCAT CATTGATGGT ACTGAAGATA TTTTTTGAGG ATTGGAAATT
GGAAGTCGTT AGTTCTTCTA TAAATGGTTT TATTTAAAAG CTTATATTAT AACGAGTTTT TGTAGGAATT GGTATATTTT
ATTATTATGT CTATTATTTT CTTCAAATGT ATAATATTTT TAATTCCCTC AAAATATATC GAAATTTCGT TTATCTATAA
AATTTTATTG CATTTTTACA TGCAATTTTA CCGGAAACAT GGTGCATTTA GTCATTCGTA GGAACTAAAA GCATTTTTTA
GGTAAGATTT AGAGGCTGAA ATGTAATAAA AGAATAAAAA TCTATTTTGA GATATTATTT GCGACTGAAA CAATATTTTA
CCCATATTAC GGTTAAAATG TTGAATAGTT AGTTATAGGG TATTATGTTC ATGCATGATG TCTATAATTT TTTTTTTTTT
TTCAATATTC AGTGTTTTTA TGAGTTTACG AGTCAGATTC TATTGAATTT CCATGAACTT GGGTAAACAC TTGAGTTTGA
CTACCTTATG ATCATCTTTT ACCTCATCAA AATATGTAAT GGTAGCAGTA ACCTGAAATA TGATTCTCGA ACTAACTTAA
TGGTGATCAA GTTTAGAAGC CCCGCAATCA ATCAAGACTA AAACTTGACA TGTTTTTGCC ATTTCCTCCT TCATGACTGA
CATTCAAAAA CAAAACTATT AACTTAGCAA CAGTTATCAA GTTATTGAGT GACTCAGCAG GATGGAGCTT CAACATTGAC
TTGATTTCTT CCTTGAGACC ATTAAAAATA ATCCTTTTCA AATACATTTG ATCTGAGCAC TTCAGGAATT TCGAGTCCAT
CTTATATTGG CCCCTATACA CTTATTGAGT TCAATTGTTT CAATGCCAAT TAATGTCCAT ATGAATTTTT AATCATCAAA
TCTTATAATC TTCTAATTCC TGTGGTGGGA AAACACACCC TACTTATGTT CTCAGTGAAC CCCTCCCACC ATTGAAACTA
TCTTAGGGCA TTGCCCTCCT TAGCTCTACA ACCCGAACTG CTTCAATTTT CTCTTCATAT GTTACCTTCT TCATTTGGGA
ACATCTCTAC ATTCTCCCTA CCCTCACATA TATGCATCAC CCTACAAGAG ATTCTAGTAG TTGCCTGTGA TCCCCTACTA
CAACTTCTGT TTCTCCTACT GCACACCCAT TTAATGGTTG GTGTGATATC AGATTCCCAT TTTAGTCTTT TCCGCTCTTT
AATTAACTCT CTCCTGTGGT TGTATAATCA CAATGTTATA TGCCTTGTTG CTATCTGGTC TTCCAATGGA GCTTATTATG
TATGTATGTA TTTGTAATTA TTTGGATACA ATTGTGAAAA TTTACCTATG GCTAATATTT ACATTATTCT TGAGTGAGTG
TGGTTCGTAA TATATCCTTT AGTTTAAATC TGTCCCTATT GGTTTGCTAC ATTATTTTCC AGCCACAAGC TGTTTACCCA
ACTTATTCAA GCTCCTTTGG AAACCAGCTT CTGTTATTCT CAATCCATAC TTTTCTGTTA AGGTTTTTGA ATCCAAAATC
CAACCTCATG ATTGCTCTAG CTGCTTGAAG CTTCCAAATG CTCTTCACAA ATGTCTTTTC AATTTTTCTC AATTGTTGTT
CTATTTGTTG ACCTGTTTTG TCATTTGCCA ATGCAGGTAT ACGACGTGAC ACAATATTTG GATGATCATC CTGGTGGAGA
CGATGTAATC CTTGCTGCAA CAGGTACCTT CCTCAGCTTC CTATATTCTT CATTACCCTT TGGACTGCAT GCAAATCTAA
GCATGGAAAA ATTCATCCAA TGTCAGTATT CAAATCTAAA TGCACCTTTT ATACTTTACT TTAATGAAGG GAAAGATGCA
ACAGAAGATT TTGAAGATGC TGGCCACAGC AAAAGTGCAA GAGAACTTAT GGAGCAGTAT TGCATTGGTG AGCTCGACCC
ATCACCTCCA GTTTCCACCA AGCATAGCTA TTCTGAAAAA TTCATGCAGC TGACAAAGCA ATATTGGGCT GTTCCTGTGA
CCTTTGTTGG TATCTCAGTG GTAGTTGGTT TCTTATACTT ACGTAAGAAG TAACATTACA CAAAGTCTGC AATTCAATTT
ATATTAATGT TGCAAATCAT TGCAACAAAT TTTGTTTTGT ATTCATTTGA AAGATAGATG TCATTAGAAA AGACTGGCTT
ATTTCAATAT GGTAACAATT GATTACATGC ATAATATTAC ATTAAAGGAT TGGTCAAAGA ATAGATGATG AAACATGCGC
ATTTTCAGAT TTATTGA

>Vigan.10G054800.01
TGCTCCATCG CTCTCGATTC CTCCCCATTT CCTAACATCC TGGATTCCCT CCCAACAAAA TTTAACATGC CAACCCTCAC
CAATTTCTAC GCCATTCAAG ATTTATCCCA CCACAAAACC AAAGACGATT GCTGGATCCT CGTCGGTGGA AAGGTATACG
ACGTGACACA ATATTTGGAT GATCATCCTG GTGGAGACGA TGTAATCCTT GCTGCAACAG GTACCTTCCT CAGCTTCCTA
TATTCTTCAT TACCCTTTGG ACTGCATGCA AATCTAAGCA TGGAAAAATT CATCCAATGT CAGTATTCAA ATCTAAATGC
ACCTTTTATA CTTTACTTTA ATGAAGGGAA AGATGCAACA GAAGATTTTG AAGATGCTGG CCACAGCAAA AGTGCAAGAG
AACTTATGGA GCAGTATTGC ATTGGTGAGC TCGACCCATC ACCTCCAGTT TCCACCAAGC ATAGCTATTC TGAAAAATTC
ATGCAGCTGA CAAAGCAATA TTGGGCTGTT CCTGTGACCT TTGTTGGTAT CTCAGTGGTA GTTGGTTTCT TATACTTACG
TAAGAAGTAA CATTACACAA AGTCTGCAAT TCAATTTATA TTAATGTTGC AAATCATTGC AACAAATTTT GTTTTGTATT
CATTTGAAAG ATAGATGTCA TTAGAAAAGA CTGGCTTATT TCAATATGGT AACAATTGAT TACATGCATA ATATTACATT
AAAGGATTGG TCAAAGAATA GATGATGAAA CATGCGCATT TTCAGATTTA TTGA

>Vigan.10G054800.01
ATGCCAACCC TCACCAATTT CTACGCCATT CAAGATTTAT CCCACCACAA AACCAAAGAC GATTGCTGGA TCCTCGTCGG
TGGAAAGGTA TACGACGTGA CACAATATTT GGATGATCAT CCTGGTGGAG ACGATGTAAT CCTTGCTGCA ACAGGTACCT
TCCTCAGCTT CCTATATTCT TCATTACCCT TTGGACTGCA TGCAAATCTA AGCATGGAAA AATTCATCCA ATGTCAGTAT
TCAAATCTAA ATGCACCTTT TATACTTTAC TTTAATGAAG GGAAAGATGC AACAGAAGAT TTTGAAGATG CTGGCCACAG
CAAAAGTGCA AGAGAACTTA TGGAGCAGTA TTGCATTGGT GAGCTCGACC CATCACCTCC AGTTTCCACC AAGCATAGCT
ATTCTGAAAA ATTCATGCAG CTGACAAAGC AATATTGGGC TGTTCCTGTG ACCTTTGTTG GTATCTCAGT GGTAGTTGGT
TTCTTATACT TACGTAAGAA GTAA

>Vigan.10G054800.01
MPTLTNFYAI QDLSHHKTKD DCWILVGGKV YDVTQYLDDH PGGDDVILAA TGTFLSFLYS SLPFGLHANL SMEKFIQCQY
SNLNAPFILY FNEGKDATED FEDAGHSKSA RELMEQYCIG ELDPSPPVST KHSYSEKFMQ LTKQYWAVPV TFVGISVVVG
FLYLRKK*