VIGGS:Variant information

Chr10:5637280 - 5643296

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
5637299	G	A	59	2314.77	1.00	UTR_3_PRIME(\|185\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5637534	A	C	55	2270.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Ttt/Gtt\|F152V\|None\|Vigan.10G054800.01)	Vigna nepalensis
5638977	T	C	46	1840.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5639144	A	T	41	1790.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5639172	T	C	46	1737.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5640109	T	C	49	2026.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5640173	C	T	40	1562.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5640310	A	T	50	1994.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5640688	C	T	57	2286.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5640822	A	G	54	2136.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641050	A	T	56	2178.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641115	G	C	51	2092.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641144	C	T	65	2594.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641183	T	C	68	2785.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641293	T	C	39	1748.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641487	C	G	66	2674.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641683	A	G	52	2001.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641723	T	C	28	1121.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641766	T	C	24	1130.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641790	T	C	29	1306.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641836	C	T	35	1451.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641877	G	A	38	1539.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641943	G	A	29	1321.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642228	A	G	19	961.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642235	C	T	24	1096.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642251	G	C	30	1411.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642270	T	C	39	1726.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642335	C	T	46	2266.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642341	G	C	53	2400.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642352	C	T	56	2516.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642425	T	C	54	2184.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642495	G	C	57	2315.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642596	T	C	56	2162.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642668	G	A	63	2538.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642712	G	A	67	2964.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642721	G	C	65	2983.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642737	G	A	64	2807.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642743	A	G	62	2772.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642910	T	A	62	2413.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642963	T	C	65	2852.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642985	C	T	63	2798.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5643030	G	A	58	2341.77	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
5639134	GA	G	39	1709.73	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5639968	G	GAAACCTCTCTCACCCTAACAACCTAAC	13	1060.73	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5640223	AT	A	51	1872.73	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641306	ATCAGAACT	A	48	2077.73	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641389	CA	C	65	1969.73	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641920	GAT	G	35	1531.73	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641933	CA	C	33	1447.73	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5641974	AAAG	A	11	437.73	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642261	CT	C	35	1582.73	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642273	AATACCCTCCTTGAGAAGAGACATTTTTAGCCTAATGTTTTAATAC	A	39	1807.73	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642530	A	ATT	60	4133.73	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5642531	G	GAAAGCAAACAATGTTTTTTACAAGAACAATAAAGATTAAAAA	62	4132.73	1.00	INTRON(\|\|\|None\|Vigan.10G054800.01)	Vigna nepalensis
5643270	TG	T	58	1933.73	1.00	UTR_5_PRIME(\|41\|\|None\|Vigan.10G054800.01)	Vigna nepalensis