VIGGS:GBrowse

Vigan.10G046400.01

Basic Information:

Name:	Vigan.10G046400.01 Multiple alignment Variant Information
Position:	Chr10:4646842..4648831 (- strand)
Length:	1990

Functional Information:

Description:	Similar to uncharacterized protein Sb01g043280. [C5WTP2, Sorghum bicolor]
InterPro:	Protein of unknown function DUF538 (IPR007493)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.41,0.08,19.51,14.24,86.57,45.17,29.25,35.92
Arabidopsis thaliana homolog:	AT2G03350.1

Automatic updates:

Name:	NM_001250158 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527511 (LOC100527511), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:4646842..4647198 (- strand)
Length:	357
Type:	three_prime_UTR

Position:	Chr10:4647199..4647578 (- strand)
Length:	380
Type:	CDS

Position:	Chr10:4648004..4648058 (- strand)
Length:	55
Type:	CDS

Position:	Chr10:4648524..4648631 (- strand)
Length:	108
Type:	CDS

Position:	Chr10:4648632..4648831 (- strand)
Length:	200
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.10G046400.01 class=Sequence position=Chr10:4646842..4648831 (- strand)
CTTTATCATC GCTTCAGATA CCCACTTTCA CACACACACA CACACACACA CACACTGCCT TTCCTTCTTC CTTCCTTTGG
GGTGTGTTGT GTGTTCCATC CAACTCCAGC TAGTCACTGA TTCTTCTCCT TGGCTACATT GCACTCCAAA AAAGTGAAGG
GAAGGGAAGA GAATAGAGGC TTAAAACAAG ACACCCAAAA ATGGAGAGGG CTCTTACCAA AGTTAGCAGC TTGAAGGTGG
GGTTGGGGAA CTCATGGATC ACCAAGAAGG CCAAGGAGGA GTTCTCTAAC ATCTCTGGAG ACATTTCTGT AAGTATTTTC
TTTTTGGGTT TCTCTTGCAT TGCATTGTTT TTTATTTTTT TCTTATTTTC GTTCTAACAT TGTTACCTTT TGATGTTTGA
GAGATCTGAA ACAGAAGCTT TGTCAATTGA TTTTTTTTTT CTCCATTTTG GTGTGATAGA TTCCCATGAT GCTTGATTCT
TCATTAAAAG TTGTATCTTT GGTTATGTGT GTATGATGGG GTATGATTTT CCTTTTTTAT TTCATTTTGA GAAATTTTCG
GGGTTTGGGA ATGGGAAATT TCTTTTCAAC CTATTTCCTG TATGCTTTGT TTGAAGGACA GGATGGGGAA AAGTGTGAAA
GGGTATATAT GTTGGAGATG AAGCTCAAAA GTTTAAAGAT TTCGGTGCTT GATTGGTGTT TAGCCTTGGA ATTTACTGTA
GATTTTGATG TCACTGCCTT GTTTGTTGAA GAAAAAATTG TGATCTTTTG CAGACCTTCT CAAATACTGT TGAAGAAAAG
GCAAAGTGGA TCTTCAACAA ACTGAAAGGT ATTAACGTGT TTTAACCCTT AATGTTCATG GCTGTTCATG TATGCATACT
AAGATTTACT TCACCCAGTT ATTTTAGTCA ATAAAAACTA GGAGAGATGC TATACCAGAT GCTTACTCTC ACATTTGGAA
ATCTTGTATT TTCCAATATA TAAATCTTCT TCATTGTTTT AATAAACAGT TATATAGCAC TATGACAAAT TAGGAGGAAT
GTGCACCAAA ACATTGAATC AATCGATTTG CACTATAGCA TTCTAATCAT TATGTTCATC ACAATTTTTC AAATGCTAAC
ATACCATTGT TGTAAGTTTT CCATCTGGTG TCTTTTTCAC ATGTCTAGTT AGGTATGCTT CTGCTGAGCA ATTTATGAAC
CACTTCATTG ATTCTAATAA TCAGTGATTT TCCTTCCCCT CCTTTTTTCT CAGGAAAACC GCAGAAAGGC CTACCGGAAC
TCCTCCGAGA GTACAATTTG CCTGCAGGGC TATTTCCACA GAACATAATC TGTTATGAGT TTGATGAAAC GAAGGGTAAG
CTGATTGTGT ACTTGCCATC TGCAAGTGAG GTGAGTTTCA AGGACTCTTC TGTGGTGAGA TACGCAACCC GAGTGAAAGG
GGTGCTTACA AGGGGAAAGC TTTCGGCAAT AGATGGAATG AAAACAAAGG TTCTTGTGTG GGTGAAGGTG ACAAGTGTGG
CAGTTGAAGG TTACAAGTCT GATAAGGTGT GGTTTACTGC TGGTGTGAAG AAGTCAAGGC CAAAAGATGC ATATGATACG
CCTCGTGAAG CTGTCAGAGT AGCAGAATTC TGAGTTTACA AATGTTGGTT ATTATGTCAT TACTATTATT GGTATGGAAT
AGGCAGTCTA CATATTGTTG GAAATGTTTA CACACTGTAG GTATACAAGT TAGGAACCTC TTCTCTGTTA TTTTCTATTA
GAGATCTGCT CATTCATTGT CTCATTGAAC GTGATTGGTT TTTGCTAGCT TCAATGGAAC TCTAATGATG CCATACAACT
CCAAACCATG CATTTCTTTG GAGGGTGTGC ATCAAATTAA ATGTTAGTTC GGTTCATGGT GCACTGTCAG CCTTGTGAAA
GTTGTTATTA AATCGTCGAA TCCATCTTTT TATTCAATCC AATGTTACAT TTGACAGTGA TAATGCGCCG

[show][hide][copy]TRANSCRIPT

>Vigan.10G046400.01
CTTTATCATC GCTTCAGATA CCCACTTTCA CACACACACA CACACACACA CACACTGCCT TTCCTTCTTC CTTCCTTTGG
GGTGTGTTGT GTGTTCCATC CAACTCCAGC TAGTCACTGA TTCTTCTCCT TGGCTACATT GCACTCCAAA AAAGTGAAGG
GAAGGGAAGA GAATAGAGGC TTAAAACAAG ACACCCAAAA ATGGAGAGGG CTCTTACCAA AGTTAGCAGC TTGAAGGTGG
GGTTGGGGAA CTCATGGATC ACCAAGAAGG CCAAGGAGGA GTTCTCTAAC ATCTCTGGAG ACATTTCTAC CTTCTCAAAT
ACTGTTGAAG AAAAGGCAAA GTGGATCTTC AACAAACTGA AAGGAAAACC GCAGAAAGGC CTACCGGAAC TCCTCCGAGA
GTACAATTTG CCTGCAGGGC TATTTCCACA GAACATAATC TGTTATGAGT TTGATGAAAC GAAGGGTAAG CTGATTGTGT
ACTTGCCATC TGCAAGTGAG GTGAGTTTCA AGGACTCTTC TGTGGTGAGA TACGCAACCC GAGTGAAAGG GGTGCTTACA
AGGGGAAAGC TTTCGGCAAT AGATGGAATG AAAACAAAGG TTCTTGTGTG GGTGAAGGTG ACAAGTGTGG CAGTTGAAGG
TTACAAGTCT GATAAGGTGT GGTTTACTGC TGGTGTGAAG AAGTCAAGGC CAAAAGATGC ATATGATACG CCTCGTGAAG
CTGTCAGAGT AGCAGAATTC TGAGTTTACA AATGTTGGTT ATTATGTCAT TACTATTATT GGTATGGAAT AGGCAGTCTA
CATATTGTTG GAAATGTTTA CACACTGTAG GTATACAAGT TAGGAACCTC TTCTCTGTTA TTTTCTATTA GAGATCTGCT
CATTCATTGT CTCATTGAAC GTGATTGGTT TTTGCTAGCT TCAATGGAAC TCTAATGATG CCATACAACT CCAAACCATG
CATTTCTTTG GAGGGTGTGC ATCAAATTAA ATGTTAGTTC GGTTCATGGT GCACTGTCAG CCTTGTGAAA GTTGTTATTA
AATCGTCGAA TCCATCTTTT TATTCAATCC AATGTTACAT TTGACAGTGA TAATGCGCCG

[show][hide][copy]CDS

>Vigan.10G046400.01
ATGGAGAGGG CTCTTACCAA AGTTAGCAGC TTGAAGGTGG GGTTGGGGAA CTCATGGATC ACCAAGAAGG CCAAGGAGGA
GTTCTCTAAC ATCTCTGGAG ACATTTCTAC CTTCTCAAAT ACTGTTGAAG AAAAGGCAAA GTGGATCTTC AACAAACTGA
AAGGAAAACC GCAGAAAGGC CTACCGGAAC TCCTCCGAGA GTACAATTTG CCTGCAGGGC TATTTCCACA GAACATAATC
TGTTATGAGT TTGATGAAAC GAAGGGTAAG CTGATTGTGT ACTTGCCATC TGCAAGTGAG GTGAGTTTCA AGGACTCTTC
TGTGGTGAGA TACGCAACCC GAGTGAAAGG GGTGCTTACA AGGGGAAAGC TTTCGGCAAT AGATGGAATG AAAACAAAGG
TTCTTGTGTG GGTGAAGGTG ACAAGTGTGG CAGTTGAAGG TTACAAGTCT GATAAGGTGT GGTTTACTGC TGGTGTGAAG
AAGTCAAGGC CAAAAGATGC ATATGATACG CCTCGTGAAG CTGTCAGAGT AGCAGAATTC TGA

[show][hide][copy]PROTEIN

>Vigan.10G046400.01
MERALTKVSS LKVGLGNSWI TKKAKEEFSN ISGDISTFSN TVEEKAKWIF NKLKGKPQKG LPELLREYNL PAGLFPQNII
CYEFDETKGK LIVYLPSASE VSFKDSSVVR YATRVKGVLT RGKLSAIDGM KTKVLVWVKV TSVAVEGYKS DKVWFTAGVK
KSRPKDAYDT PREAVRVAEF *