Variant information

Chr10:4646842 - 4648831

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 [SNPs] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
4646914TG481939.771.00DOWNSTREAM(|157||None|Vigan.10G046300.01), UTR_3_PRIME(|285||None|Vigan.10G046400.01)Vigna nepalensis
4647148GA491839.771.00DOWNSTREAM(|391||None|Vigan.10G046300.01), UTR_3_PRIME(|51||None|Vigan.10G046400.01)Vigna nepalensis
4647223TA461856.771.00DOWNSTREAM(|466||None|Vigan.10G046300.01), NON_SYNONYMOUS_CODING(MISSENSE|gaA/gaT|E173D|None|Vigan.10G046400.01)Vigna nepalensis
4647664CT612364.771.00DOWNSTREAM(|907||None|Vigan.10G046300.01), INTRON(|||None|Vigan.10G046400.01)Vigna nepalensis
4647994AG461847.771.00DOWNSTREAM(|1237||None|Vigan.10G046300.01), INTRON(|||None|Vigan.10G046400.01)Vigna nepalensis
4648086AG512129.771.00DOWNSTREAM(|1329||None|Vigan.10G046300.01), INTRON(|||None|Vigan.10G046400.01)Vigna nepalensis
4648617AG632440.771.00DOWNSTREAM(|1860||None|Vigan.10G046300.01), SYNONYMOUS_CODING(SILENT|ctT/ctC|L5|None|Vigan.10G046400.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
4648776(GT)13(GT)8461999.731.00DOWNSTREAM(|2020||None|Vigan.10G046300.01), UTR_5_PRIME(|146||None|Vigan.10G046400.01)Vigna nepalensis