GBrowse Details

Vigan.09G221500.01

Basic Information:
Name: Vigan.09G221500.01
Multiple alignment
Variant Information
Position: Chr09:36450925..36456054 (+ strand)
Length: 5130
Functional Information:
Description: Similar to cytochrome c oxidase subunit 5b-2, mitochondrial-like. [XP_004486697.1, Cicer arietinum]
GO: Cellular Component: mitochondrial envelope (GO:0005740)
Molecular Function: cytochrome-c oxidase activity (GO:0004129)
InterPro: Cytochrome c oxidase, subunit Vb (IPR002124)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:71.30,80.30,79.98,31.01,149.28,101.68,69.62,37.37
Automatic updates:
Name: NM_001253167 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytochrome c oxidase subunit 5b-2, mitochondrial-like (LOC100780886), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:36450925..36451134 (+ strand)
Length: 210
Type: five_prime_UTR
Position: Chr09:36451135..36451273 (+ strand)
Length: 139
Type: CDS
Position: Chr09:36451346..36451434 (+ strand)
Length: 89
Type: CDS
Position: Chr09:36451680..36451730 (+ strand)
Length: 51
Type: CDS
Position: Chr09:36452622..36452688 (+ strand)
Length: 67
Type: CDS
Position: Chr09:36452812..36452891 (+ strand)
Length: 80
Type: CDS
Position: Chr09:36455167..36455229 (+ strand)
Length: 63
Type: CDS
Position: Chr09:36455230..36456054 (+ strand)
Length: 825
Type: three_prime_UTR

>Vigan.09G221500.01 class=Sequence position=Chr09:36450925..36456054 (+ strand)
CAAAGATTAA AATTTGAAAT AAAATAAATC GAAATATGGA ATAATAAAAT GTAGTAAAAT TGTAATTTTG AGCGGTCGAT
GGGTTAGGAG CAATCGAAAG GTAGCCGAAG AGAAAGAGAA AAGACGATCT AGAGTGAAGG AAGTAGCAGG AGGTAACAAC
TCCATTTCCA ATTTTCTGAC TCGGCTGACG GGTGCGACCT GAGATCAAAC ATGTTGCGGA GGTTTCTCTC TTCCCACCTA
AAAACCCTAG CCGCCGCTTC TTCCTCCTCT CTCACTTCCC GATCTGCTTC CGCCGCCGCC AGATTCCCCG CTCTTTCTCG
CTCCTACCGC TACTTCTCAA CTCAATCCGG TGCTCTATCT TCCTCTTTCT TTATTTTCTC TTTCGCCAAT CGATTATTCG
TCTTATTTCT TCTTCTTATA GAGGATGCTA CTGCGATCAA AAAGAAGTTT GAGGATGTAA TGCCTATTGC TACCGGACAC
GAGCGCGAGG AGCTCGAAGC TGAGCTCGAG GTCTCTCTCT CTCTCTCTCT CGATTCAATC AAATGCATAG TGTGCTTCGT
TTTTTGTTAA TAATTCTAGA TTATTTATTC TTCATACGCA CACACGAGCC TTATGGTGAA GGTTTAAAAT ATTGAAGAAA
GAGCTATTAA GCAAAGTGTT ATTTCCTATA CACAATTTGA GTTGAACCAA GCATTTGAAG GGAGGTTCTC ATTGTTGTTT
TTTTGTTCTA ACTGTAATCT GATTATTTTG ATTAGGGAAG GGATATTCTT GAAATAGACC ATCCCGAAGG TCCATTCGGC
ACAAAGGTCA GTCTTATTGC TTCTCTATTT GAACTGTATT TTAACTAATG TATAAGTTTG TTTTCTAGGA ATAGCATTGA
TTTCGCCATG GGAAACTATA AGAGTCCATA AGTGATGTTC GTTTCGATTT TCATTTCATC TTTTGTTTGA GATTTATGCT
TGTGTAGCAG TTTTCCATTT GAAGGCTAGG AAACCTTCTA ATGCACTATT TCCTGGTAAC ACCCCCTCCA GGGCGTACAC
ACTACATGTG ACTATCTCTG CATAACCTGA ACAAGCGTTG CTGTAACTGT TGAGTCTTGG AATTTACTTA TTGGAAGGTG
TTTTCGATGT TGGTATGACC ATATTTTTGT AGTACCGCAA TTATGTGAAG AGGTCTTGAT TGTGAAAAAC TTGAGTATTT
CTTCTTCTAG GTTAAGATTA CATCTAGAAG CAAGCTCCTC ATAACCTGTT GATATAAAAG TCTGTGGTAC TCTCTCATAA
ACCATTGTGT CAGTAAATGA TAATCCTTGT GCTTAATGAG GTTTTAGTCC AGGAGAGAAG TGTGAAAGCG TTGTTGATGC
ATAATATTTT GACGTCAGTG AAATTCGTTG AGCTTAGCTT GGATAACAAT ATAGCTGTTA ACACAGACAC TAATATATTT
GCATCAATTG ATGAAATTTT ATCATCTGAG ATTGTCTGAG CCTTTCGTAT CCTGTACCTT CTAATTGTAT CTTACATAAG
GTTCTTAGTA TTTCCCCTTT CATTTGATTG ATTGAGTTAT CTGCCTGTGT AAGTATTCAT GTTTCTTTCT CTAATTCTTA
CCAAATAGTT TGGTCAGATT CACATCGCCA TAATATGAAT AGTGATTTTA TAAATGCTTC ATCTGTTTCT GCTTTCATTA
TTTGTTTTGG TTCATAGGAA GCACCTGCCA TTGTAAAATC TTACTATGAT AAAAGGATAG TTGGATGCCC AGGCGGTGAA
GGCGGTGAGC ATCAAAATAT CCCTTGTTTC TCTTAATTTG TATCAAGATT TCATCCTATC GTGATGAGAA ATTCTTGAAT
TCTTGTTGTG GTGTTAATGA GCGGGTGAAC AACTTGTTTT ACTGCAGAGG ATGAGCATGA TGTTGTCTGG TTTTGGCTGG
AGAAAGGAAA GCCTCATGAA TGTCCTGTGT GCGCACAATA TTTTGTTGTA AGTTCACAAT GATGCTTAAA ATATCTATTA
CTGTTGCGTA ATATTTTTGT GGTGAGTGTA GAATCAATGA GTCATTTATA TCCTGTGCTT TTACTTTAGA CAGAGATGGG
GTTGAATGCC AAGATAATTA GGTATTTAGA TTGAAAACTG TAGTTGGGTG CTTCACTTGT GCGCATTGAT AGTTGATTGT
CAAGCACCGG TTGCTTAGTG GTTGTTGTCA AGCTGAGGCT GCTCCTATAA AATATATCTG GAGCAGTTTT TAACTCCCTT
AATAACTCAA ATATTTCTAC AATCTAATTT CTTTAACTAG TTTTAAATAT GATTATCTGA TTTTGTTGCA CAATTTTGGT
GTTTTTAGTT TATTGCTGTG AGATAATTCT CATTTTAGTA CAAATATATT CTAAAATAGT TGATGGGAAA ATGAGAGGTT
TTCAATCTTA ACAATGTATG TATTTTAAAC ATTGAATTTT TATTATCATC CAGAAGGTAG ATGGTTTAAG GGTACATTTG
GGTGAACAAT TTCTTTAACT AGTTTTAAAT ATGATTATCT GATTTTGTTG CACAATTTTG GTGTTTTTAG TTTATTGCTG
TGAGATAATT CTCATTTTAG CGCAAATATA TTCTAAAATA GTTGATGGGA AAATGAGAGG TTTTCAATCT TAACAATGTA
TGTATTTTAA ACATTGAATT TTTATTATCA TCCAGAAGGT AGATGGTTTA GGGGTACATT TGGGTGAACA ATTTAATTAG
AAACTTATTC AATTAGCTGC TACCACATGA GAGCTTATGT AATAATCGTT ATCTTGGTAC TGTATGAGAA ACTTATTGAA
ATAATAGATT AAGAGCTGAT GGGTCGTTTA CAAGTCACTT CCATATGCTT AGAACAAACA CCCATCAATT TTCATTTTGA
CTACTATGAT GATGAGATAA GCCCAAATAA ATTCAATGGA GCTCTTCCAA TCGCCCGTAA GTTGAGTACC TATTTTTGAC
CTCAAAGCAA GTGACTAGTC AAACAACGAA ACCTTTTATT AAATCAAAAT TTTGTAAGCT CCTGATAAAA TTATTAAACT
CTTATAGTTT ATTTATATTT ATGTAGGGGC TTGTAACCAA AATAATATTA AGAAATCATA ATCATGGTAT ACAAAGTCCA
AACTAAATAA TATTCTTATC ATAGTTTCCA CATCAAATGT AATGCCATAA AACAATACAA TACCAACATT CTAACTTTGT
AACAAAGCAC TGAAGGGACA AAGTGTGACA GTGATAAAAT TAAGATCCTG TTTCGACAAG GTTTTCCGTA AGAACCTCTA
GGAGAAAAAC ATAAGAAAAA CAAAATTGAC TTCTCCATTA GTTAAAATTA ACTTCTAATG CTTAAACTAG TTTGTAGAAG
CTCTCATAAT TTCACTAAAT TTTGTTTTCT AAGTTGTATA TAAGTTAATT TGAACTTATG GAGAAGTTAA GTTAATTTTT
TTTTCATATT TTTCTCAAAA TAGAAGTTCT TTTGAAGAAG CTTGTCCAAA TGGACCTTAA AACATGAAAG TTCATAAAGT
GAAAAGTAAA AGTAACCAAA ATTCCAATCT TTCAGCATCT TTGTTTTCAC TAACATTATC ATTAGATAAG AAGACGTGTT
CTAAGGAAGA GAAACCTGAA GGCTCACAAC TCACGAGCTA TAGCTGAAAA TGCACAATAG CCAAGAAAGA CCTGGGAAGC
CCAAAAGAAA ACAGTGCAAT TTTGTGGGAG CAGTTTTAGG CATTTTATTG AAACTAATGG AACTGGCAGC AATTTTTTTA
TTTTTTATAT TTTTATTTTC AACATGCTTG CATGGTCCTA TATAAGCTCC TCATTGGAGT TCAACCGTGC GCAAGTCTGT
GATGGAGTTG GTTTGTCCTG ATCCTGGCTC AATGCGTGAA CTTGTGTAAA TTCACCTGTT AACCCTCGAG TTTGGCAACC
ATGGGCCAGC TCATCTTGAG CAAATCAATT TGTTTGCCGG AATGCTCCGC AAGTTCCTGA ATTATCTATA ACATCCCAGG
AAATAGTTTG AAAATCTATA GGAATTTGAC TTTGGCAATG TCATCAATAT GATTTAGTGT AATGTTGGTG GCCGCTTCGG
AAACGCATTA GTTTTTGCCT AACTACTGTC TTGTCTTGTG TCCAACTTTC GAGAGCAAAG TTTCTCATAT CCCTGTCAGC
TATTTAGAAC ATTAATGGAC AATAATCAAA TAACTGTTTA CACATGGACG CTAATTATTC TATCTTTTTT TTCCCCGAAC
AGCTTGAAGT GGTAGGACCT GGTGGACCAC CCGATGGACA TGGCGATGAT GATCACCACC ATTGATTGAT CATTCAATTT
TCCATCTGGA ATAAATTCTG GGAACATGGA GAGACATTGT TTAGCATACA CTCCGGCCTT TCAAAATGCT GTGGCCTGTT
TGGTTTTGAT TTGTCTGTAT GGTATGGCAA CTTTTGAGGT AGTAACTTTC TGCGATTGTT TGAACGCTGT ATGCTCATTT
TTTTGAGCTA TCATGGTGCT AGACTGTTTT TGTTGGTTGC GAAATAATGG ATAGAACTTG ATGATTTCTT AACTGGTTTG
AATTTCCGGA ACCACGTAAG GGATTATGTT TTGGGGAGCA GGGAGAGAAT TCCAAGAACG TGACTTCAAA TTGTTTAAAA
GGTGTGAGCG TAACGGCGAG GAGGTCCTCT CGCCACTAAA CAACATTTAT GTAGTAACGG TGGTTGTTTT TAATCATATT
TTCCCCATTT TGTTTCAGCC TATTATTAAG CAGTTCTACT CGTTTAGAAC TCTTAATCAT ATCTTAAAGA ATCATCATCT
TGTGAAATGG TTGTTTTTTC CAAGTTCTAA CTATTTGGAA CGTTCACATG GCTACAGAAT ATCTAGCATC AGAAATAGAC
GTTGAATACG TAGTATGCAA ATATTGTGGA TGAAAACAGC AAATACAAGT TTGATTACAC CGTCATCAAC CCATGAATTT
ATCTCGCTGA AAGCTACAAC CAATTGGTTT GCCGTTGAAT ATTACATTAA CAAAAAAAGT TATATGTATA TGTATTGTGA
ATAAATCTTT TCAAGAACTT CATGGAACAA ATGGCACATG AAGTCCTTAA TTCTGTTTTA TTTTTTCGGA TTACAAATAA
AGTAACCCAG 

>Vigan.09G221500.01
CAAAGATTAA AATTTGAAAT AAAATAAATC GAAATATGGA ATAATAAAAT GTAGTAAAAT TGTAATTTTG AGCGGTCGAT
GGGTTAGGAG CAATCGAAAG GTAGCCGAAG AGAAAGAGAA AAGACGATCT AGAGTGAAGG AAGTAGCAGG AGGTAACAAC
TCCATTTCCA ATTTTCTGAC TCGGCTGACG GGTGCGACCT GAGATCAAAC ATGTTGCGGA GGTTTCTCTC TTCCCACCTA
AAAACCCTAG CCGCCGCTTC TTCCTCCTCT CTCACTTCCC GATCTGCTTC CGCCGCCGCC AGATTCCCCG CTCTTTCTCG
CTCCTACCGC TACTTCTCAA CTCAATCCGA GGATGCTACT GCGATCAAAA AGAAGTTTGA GGATGTAATG CCTATTGCTA
CCGGACACGA GCGCGAGGAG CTCGAAGCTG AGCTCGAGGG AAGGGATATT CTTGAAATAG ACCATCCCGA AGGTCCATTC
GGCACAAAGG AAGCACCTGC CATTGTAAAA TCTTACTATG ATAAAAGGAT AGTTGGATGC CCAGGCGGTG AAGGCGAGGA
TGAGCATGAT GTTGTCTGGT TTTGGCTGGA GAAAGGAAAG CCTCATGAAT GTCCTGTGTG CGCACAATAT TTTGTTCTTG
AAGTGGTAGG ACCTGGTGGA CCACCCGATG GACATGGCGA TGATGATCAC CACCATTGAT TGATCATTCA ATTTTCCATC
TGGAATAAAT TCTGGGAACA TGGAGAGACA TTGTTTAGCA TACACTCCGG CCTTTCAAAA TGCTGTGGCC TGTTTGGTTT
TGATTTGTCT GTATGGTATG GCAACTTTTG AGGTAGTAAC TTTCTGCGAT TGTTTGAACG CTGTATGCTC ATTTTTTTGA
GCTATCATGG TGCTAGACTG TTTTTGTTGG TTGCGAAATA ATGGATAGAA CTTGATGATT TCTTAACTGG TTTGAATTTC
CGGAACCACG TAAGGGATTA TGTTTTGGGG AGCAGGGAGA GAATTCCAAG AACGTGACTT CAAATTGTTT AAAAGGTGTG
AGCGTAACGG CGAGGAGGTC CTCTCGCCAC TAAACAACAT TTATGTAGTA ACGGTGGTTG TTTTTAATCA TATTTTCCCC
ATTTTGTTTC AGCCTATTAT TAAGCAGTTC TACTCGTTTA GAACTCTTAA TCATATCTTA AAGAATCATC ATCTTGTGAA
ATGGTTGTTT TTTCCAAGTT CTAACTATTT GGAACGTTCA CATGGCTACA GAATATCTAG CATCAGAAAT AGACGTTGAA
TACGTAGTAT GCAAATATTG TGGATGAAAA CAGCAAATAC AAGTTTGATT ACACCGTCAT CAACCCATGA ATTTATCTCG
CTGAAAGCTA CAACCAATTG GTTTGCCGTT GAATATTACA TTAACAAAAA AAGTTATATG TATATGTATT GTGAATAAAT
CTTTTCAAGA ACTTCATGGA ACAAATGGCA CATGAAGTCC TTAATTCTGT TTTATTTTTT CGGATTACAA ATAAAGTAAC
CCAG

>Vigan.09G221500.01
ATGTTGCGGA GGTTTCTCTC TTCCCACCTA AAAACCCTAG CCGCCGCTTC TTCCTCCTCT CTCACTTCCC GATCTGCTTC
CGCCGCCGCC AGATTCCCCG CTCTTTCTCG CTCCTACCGC TACTTCTCAA CTCAATCCGA GGATGCTACT GCGATCAAAA
AGAAGTTTGA GGATGTAATG CCTATTGCTA CCGGACACGA GCGCGAGGAG CTCGAAGCTG AGCTCGAGGG AAGGGATATT
CTTGAAATAG ACCATCCCGA AGGTCCATTC GGCACAAAGG AAGCACCTGC CATTGTAAAA TCTTACTATG ATAAAAGGAT
AGTTGGATGC CCAGGCGGTG AAGGCGAGGA TGAGCATGAT GTTGTCTGGT TTTGGCTGGA GAAAGGAAAG CCTCATGAAT
GTCCTGTGTG CGCACAATAT TTTGTTCTTG AAGTGGTAGG ACCTGGTGGA CCACCCGATG GACATGGCGA TGATGATCAC
CACCATTGA

>Vigan.09G221500.01
MLRRFLSSHL KTLAAASSSS LTSRSASAAA RFPALSRSYR YFSTQSEDAT AIKKKFEDVM PIATGHEREE LEAELEGRDI
LEIDHPEGPF GTKEAPAIVK SYYDKRIVGC PGGEGEDEHD VVWFWLEKGK PHECPVCAQY FVLEVVGPGG PPDGHGDDDH
HH*