Variant information

Chr09:36450925 - 36456054

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
36450954CG542240.771.00DOWNSTREAM(|2833||None|Vigan.09G221300.01), START_GAINED(|||None|Vigan.09G221500.01), UPSTREAM(|489||None|Vigan.09G221400.01), UTR_5_PRIME(|181||None|Vigan.09G221500.01)Vigna nepalensis
36451392TC271100.771.00DOWNSTREAM(|3271||None|Vigan.09G221300.01), SYNONYMOUS_CODING(SILENT|atT/atC|I62|None|Vigan.09G221500.01), UPSTREAM(|927||None|Vigan.09G221400.01)Vigna nepalensis
36451500CA481952.771.00DOWNSTREAM(|3379||None|Vigan.09G221300.01), INTRON(|||None|Vigan.09G221500.01), UPSTREAM(|1035||None|Vigan.09G221400.01)Vigna nepalensis
36452687CT542037.771.00DOWNSTREAM(|4566||None|Vigan.09G221300.01), SPLICE_SITE_REGION(|||None|Vigan.09G221500.01), SYNONYMOUS_CODING(SILENT|ggC/ggT|G115|None|Vigan.09G221500.01), UPSTREAM(|2222||None|Vigan.09G221400.01)Vigna nepalensis
36452786CG441727.771.00DOWNSTREAM(|4665||None|Vigan.09G221300.01), INTRON(|||None|Vigan.09G221500.01), UPSTREAM(|2321||None|Vigan.09G221400.01)Vigna nepalensis
36453199AG532330.771.00INTRON(|||None|Vigan.09G221500.01), UPSTREAM(|2734||None|Vigan.09G221400.01)Vigna nepalensis
36453799TC542207.771.00INTRON(|||None|Vigan.09G221500.01), UPSTREAM(|3334||None|Vigan.09G221400.01)Vigna nepalensis
36454190CA582324.771.00INTRON(|||None|Vigan.09G221500.01), UPSTREAM(|3725||None|Vigan.09G221400.01)Vigna nepalensis
36454997CT421637.771.00INTRON(|||None|Vigan.09G221500.01), UPSTREAM(|4532||None|Vigan.09G221400.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
36453195CCT492321.731.00INTRON(|||None|Vigan.09G221500.01), UPSTREAM(|2731||None|Vigan.09G221400.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
36451435(TC)10(TC)19251389.731.00DOWNSTREAM(|3315||None|Vigan.09G221300.01), INTRON(|||None|Vigan.09G221500.01), SPLICE_SITE_DONOR(|||None|Vigan.09G221500.01), UPSTREAM(|971||None|Vigan.09G221400.01)Vigna nepalensis