GBrowse Details

Vigan.09G197800.01

Basic Information:
Name: Vigan.09G197800.01
Multiple alignment
Variant Information
Position: Chr09:34369641..34374516 (+ strand)
Length: 4876
Functional Information:
Description: Similar to Uncharacterized protein. [Q06A73, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: histone binding (GO:0042393)
InterPro: Zinc finger, PHD-type (IPR001965)
Zinc finger, FYVE/PHD-type (IPR011011)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, PHD-type, conserved site (IPR019786)
Zinc finger, PHD-finger (IPR019787)
Alfin (IPR021998)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:43.54,39.71,19.21,26.20,16.28,18.66,37.89,15.70
Arabidopsis thaliana homolog: AT3G42790.1
Automatic updates:
Name: NM_001250992 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PHD1 (LOC100170700), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:34369641..34369893 (+ strand)
Length: 253
Type: five_prime_UTR
Position: Chr09:34369894..34369987 (+ strand)
Length: 94
Type: CDS
Position: Chr09:34371232..34371264 (+ strand)
Length: 33
Type: CDS
Position: Chr09:34372156..34372384 (+ strand)
Length: 229
Type: CDS
Position: Chr09:34372554..34372689 (+ strand)
Length: 136
Type: CDS
Position: Chr09:34373774..34374043 (+ strand)
Length: 270
Type: CDS
Position: Chr09:34374044..34374516 (+ strand)
Length: 473
Type: three_prime_UTR

>Vigan.09G197800.01 class=Sequence position=Chr09:34369641..34374516 (+ strand)
AATTAGTAAA ACATTAAAAA AAAAGAAAAA AAAAAAGAAG AGTTTTCTTT TGTTGTTGTG TTTGTGCAGT GACTGCACTT
TGCAAAATTT TGGTTGCAGA GAGGCAGAGA GAGGGAGCAC TCTCTACACT TTAAGCTCTC AGCTCTGCAA CTTCCAAATC
TCGTTTCCTC TCAAACGACT TCGTTTCGCA CTCTCTTTTG CTTTCATTCT TCTGATTTAG GTTTCAGCAG GAGGACCACC
ACCGGAAGGG GAAATGGACT CGCGCACGTA TAATCCACGC ACGGTCGAAG AGGTTTTTAG GGATTTCAAG GGCCGAAGAG
CTGCTCTCAT CAAAGCCCTT ACCACTGGTG AAGTTTTTGC TTTTCTTTAT CTAAGATGGT TTTCAATTTC TGTCTTTGAC
ACCGTTTTTT TAGTCAAGTA ATGTGCTTTG AATACAAATT TCGTGTTTTT TTTTTTTGGG TTTTGCCTTT TGGTTTTACT
TAATGTGTTG GTGAAAATTG TCGTGTGGGT TTAGCTTCGT GTTTGGCGTC GGTGTTATTG CCGTTGACGC TTGACAGGTG
GTGGTGAGAG AATTTTGGTT TAAATATTTG GAGTGTTTGG CATTTTTTTT AAAATTTTAA TTTGAGGTGA TAATTTAGGT
TTTGTCTGCT CTGTGTAAAT TTTCGTTTTT GTGTTTTTTT GGGTTTGCGT GTGAATGGGT TTGTCTTTCA AACTTTCTAT
GGATGGTTTT CCGTTGTCAA TTTTCATTTG ATTTGACTTT TTTGTCAATT CACGGCTTCC TTATTGGCAT TGTATTGTGG
TTTGAAGAAG AGGCTTTGGA CCTTCCATAG TAGGTTTGTG TGGTTTTTGA GTGTTGTTTG ATTTGTGTTT TCTAAGGAAT
TTGCACGTGT TTCTTCCTTT TCTTCTTGTT ATTCTCCTTT CAGTATGCTT AACTCCGGTA TGGTTTAGCA CTTAACGTGG
TGTTTTGTTT ATATTTTAGC TTGAAAAGGC TACTTCGGTG TATTTGTGGA AACGTTGGGT AACCCTCAAT TTTCCTGATC
CACCAATATT GTTACTTCTC CATATTTAGC TTTGAAAATT GTGAAAGGAC ACTTGGTGCC TATGAAACAG CAATCCAAAC
ACACATATGA TGCGTTTCTT CTTGTCAGTT TCTTTTATTT CCTGATCATT AGTCTTTGTT TGTTTACCGT TTTCAAAAAC
AGTTTTGTTT ATTTCATGAA ATAAAATTTG TTTGTCTCCT AAATACATTC GAATGTTTTT TTTCCCTTTG AGCACATTTA
TGTTTTCTAA AAGTTTTGCC CTGAAAACAT TTTCCAACTG TTTTTGGTTT TTCAAATATT GGTTATGGAA ACAATTTTTC
TAACTGATTT TGAACGAGAA ATAGATTATT GAGTATTTTA AAAGTAAGTT TTTAAAACAA AAAGATGGTG AGAAAATCAA
ACAGGCCCTT AATATCTATA TTCATTTTCA ACGCTTGAAT GTCTGATGCT CAGCCTTTTG TATTTGTTTA TCTTTTAAAA
TTTATCTGTA TGAAGGTTTT GGAAGCTTTT TCTTACTAAT GTACTTTTTC TTCTGGGTAA TGCTGTTGCA GATGTTGAAG
ATTTCTACAA CCAATGTGAT CCAGGTTAGT TATTCTCTCC TTTTGATTAG TGTTGTGTGC AACAATATTG GTGTTTTTGA
ATGGTCATTT AGCTTTAACT TATCGTATGG ATGGATTCAA TTGGGTCTTC TGTAAAGATT AACAAATAAA TAATCATTCT
GTTGATTTAC TATGATGTTT GAAGGATATT TTTCTTTGAG TGTTGGACTA ACTGATATAC GTAATGCTGT TTGTTTCATA
TCAGCGTATA ATTTTAAAAC TCTTCCAACC TACCTGTTCT CTTGATTAAT TAATACTTTT CCTTTTTAAA ATTGATTCCT
GTGTTTTCTT GTTGAATTGT GGCTTAGTTA TGTTTTTCAA TTACAAATTA ACTGTTCTTT GTCATATGAT TTGGGGGGTT
GTATACCATG TAATAGTCAA AGTGGTCATA ACTAGCATTC CAGTACTTGT TGCCTTTCTT GATTCACTGT AATTGTGAAT
AGTTTTCAAG CTTGTTGTAA TGTTCTGCAA GTTTATACAA AAGTGATGCT AAAATGACTA TATTTAGGGT TTTGCATGAT
TCATGTTTTC CATTTAATTT CGTGAGTAGT TATTTCAATA TAAAAATGTG ATTATCAAAT CTGGTTATTG ACTGAACTTG
AGGGAAATTC TTTTACATTG TCAACTTGTC GTACTCATAT CACTGTCAAT GTCATTCTCC TACATATATG TATTCTTTTT
GTGCTGAGTT ATGTTAAATT TAATTGAGTG CCTGGTGCTT CTCGGTCTCT TGATTGTTAT TTTTGTTAAT TTTTCTTTCC
AAACAGAAAT ATTGCTTTTG CGGCATTAAG AAGTTTTTAG GGATTATAAG CTTTGCTTTT TATTTATTCC ATTTGGTGCT
CATGTTTTAT AAATCATTTG CCTTCATTCC TTTAGAGAAG GAGAATCTGT GCTTGTATGG CTTTCCCAGT GAACAGTGGG
AAGTAAATTT ACCTGCTGAA GAAGTACCAC CTGAGCTTCC TGAGCCTGTG CTGGGCATCA ACTTTGCTAG GGATGGCATG
CAAGAAAAAG ACTGGCTATC TTTAGTTGCT GTCCATAGTG ATGCATGGTT ACTTGCTATT GCATTCTATT TTGGAGCCAG
ATTCGGGTTT GATAAAGCTG ACAGGTATTT CATACTCCAA CCTTAAATCT TATCTGAAGT TAAATTAAGT TGGTGTGTAA
AATTACTGAG CATTTATGAT TTTGCTTGTC TGATTTGTCT GTCTCGTTGG TTTAGTTCTT TCCTTTTCAT GTCCCATCCA
TCCATATACT CATGATTTGC ATATGTAATG CAGGAAACGA CTTTTCAACA TGATCAACGA ATTGCCAACA ATATTTGAAG
TTGTTACTGG TGCAGCAAAG AAGCAAGTTA AGGAGAAGTC TTCTGTTTCA AACCACAGTG GCAGCAAGTC TAAGTCCAGC
TCTAAGGCAG TAATAATATC TTCTTGAACC CCTGCATGGC CTATAATTTT ATTTTTTTCA TTTATACCTT TTTTTTTGGT
AGCAGTGATG AACTCAGGTT GATCTTCAGG TGTTGTTTGT TTCTAGATTA TAGCCTCATT AGTTTAAGTG CATTGTTTGT
TGAGTTAATT TATGAAAGTT CAGTTTGCAT TCAATACTTT AAAACATTAG AAATATTGTG TAAATCTTAT GAAAATGGTG
ATGTATATAT GCATGTTTTC TGAAGATAAA TATAGTTTCA CATTTTATGG ATATCATTTC GTAAGTAGGG GTTCAATATC
ATGGTATACT ATGCCCCGAG TCCTTAACAG AAAATATGGG TAGTTATGGA TAGTGGCATT CTCTGGTATG CTCTTAAAAA
ATAATGTAGA AAAAGCAGAT TGTTATGTGT GCTTGCTGAG ATAAAATTTC ATATGAATAG AGATTAAAGA TAACACTAGC
GTAGTTAGAG TGGGGAACAA TGTTGAAACT TTATGACCTT GATACAACTT ATATCCCTTG ATGAGATTAA GCTGTGTCTA
AAAGATTGAA GTGTCGGTGA AATGGATATA CATCTTAACT TGACCTTGTA TTTTAGTTTT GATCTGTAAG CATTGCACTT
CTAACCTGAA ATTTGATCTT AAAGGGTTAT GGCATATGAA TTTGTATATA TATATTTATT AACTTCCAAT ATATCGTGTT
CCTTACCTGT ATAAATGATC TATTTGGATT CTTAACTACC AACCTCATTC CTGTAGGAAA GGGGTTAGAT GAAGAGGGGG
ATAAAATATG GGAATATCCT ATCATGATTT TGTACAGTTC TGAATTCAAA TCTGATTTTG GGAATTTCTT TGCTTGAATT
TCTGTATGTT GTAGTGGTAC CACATTGATG TTTTCATTGT CTGTTGAAGC GGTTGTTTAA ATGGGATGCA TTGTTGCTGT
AGTTCTGTAT TTGTATGAAA ATGTGTGAAG GTATAGAAAT ATCTGGCTCA TATTTTGCAT GGTGTCGTCA TATTGTGGTT
CTGTTTTGGT CCTCAGCTTG TTTGCTTTCT CATCTAATTG TTATTTTGTG CAGCAACGAG CTCCAGATTC TCAGAGTAGA
CAGTCAAAGC CATCGCAACC AAAAGAAGAG GATGAAGAAC TGGATGAACA AGATGATGAT GAACATGGAG AGACCTTGTG
TGGGGCATGT GGTGAGCATT ATGGCACTGA TGAATTCTGG ATTTGCTGTG ACATATGTGA GAAATGGTTC CATGGTAAAT
GTGTGAAGAT TACACCAGCT AGGGCAGAGC ATATCAAACA ATACAAGTGT CCCTCATGCA GTAACAAGAG AGCTCGCCCC
TGACGAACAT GAACCAAGTT GTTCCACCGT TGACAATCAT TGTTGGGGTC TTTGCTGATC GTGTTCTGCC TTTCTTCCTA
GATGTTGCAG TTTATGGATA GTTTGTGTTT GGCAGATGTA GGTTTCTTTT CTAGTCTGTA GGATTCTGCT GTGTTTGGTT
TTGTTAGTGT CAACTGCAAT TCAGTCGACG CCTTGGATAT GATCAATTTG TAGTTTATGC ATTGTTGACT TGGGAAAGTG
AAGTCTTTTC CTTAATGTCA CGTTAAGACT AGGTTAATGA AAAACACAAA TTTATTTAAA TGGATTTCTA GTTATGTGAT
TACTAGTTTG CTAACCCTCC CCCATAACTG AAGGACTTTT GGACCTAATG TTTGGTTTTT TACACCGAGC TTTTAGCCGG
CGAAAAGGGT GGCTAAGCTA ATGTATCCAG GAAACTGTTA TCTTTATTTT AGTCAATGTG TGCATGCTCC ATATCA

>Vigan.09G197800.01
AATTAGTAAA ACATTAAAAA AAAAGAAAAA AAAAAAGAAG AGTTTTCTTT TGTTGTTGTG TTTGTGCAGT GACTGCACTT
TGCAAAATTT TGGTTGCAGA GAGGCAGAGA GAGGGAGCAC TCTCTACACT TTAAGCTCTC AGCTCTGCAA CTTCCAAATC
TCGTTTCCTC TCAAACGACT TCGTTTCGCA CTCTCTTTTG CTTTCATTCT TCTGATTTAG GTTTCAGCAG GAGGACCACC
ACCGGAAGGG GAAATGGACT CGCGCACGTA TAATCCACGC ACGGTCGAAG AGGTTTTTAG GGATTTCAAG GGCCGAAGAG
CTGCTCTCAT CAAAGCCCTT ACCACTGATG TTGAAGATTT CTACAACCAA TGTGATCCAG AGAAGGAGAA TCTGTGCTTG
TATGGCTTTC CCAGTGAACA GTGGGAAGTA AATTTACCTG CTGAAGAAGT ACCACCTGAG CTTCCTGAGC CTGTGCTGGG
CATCAACTTT GCTAGGGATG GCATGCAAGA AAAAGACTGG CTATCTTTAG TTGCTGTCCA TAGTGATGCA TGGTTACTTG
CTATTGCATT CTATTTTGGA GCCAGATTCG GGTTTGATAA AGCTGACAGG AAACGACTTT TCAACATGAT CAACGAATTG
CCAACAATAT TTGAAGTTGT TACTGGTGCA GCAAAGAAGC AAGTTAAGGA GAAGTCTTCT GTTTCAAACC ACAGTGGCAG
CAAGTCTAAG TCCAGCTCTA AGGCACAACG AGCTCCAGAT TCTCAGAGTA GACAGTCAAA GCCATCGCAA CCAAAAGAAG
AGGATGAAGA ACTGGATGAA CAAGATGATG ATGAACATGG AGAGACCTTG TGTGGGGCAT GTGGTGAGCA TTATGGCACT
GATGAATTCT GGATTTGCTG TGACATATGT GAGAAATGGT TCCATGGTAA ATGTGTGAAG ATTACACCAG CTAGGGCAGA
GCATATCAAA CAATACAAGT GTCCCTCATG CAGTAACAAG AGAGCTCGCC CCTGACGAAC ATGAACCAAG TTGTTCCACC
GTTGACAATC ATTGTTGGGG TCTTTGCTGA TCGTGTTCTG CCTTTCTTCC TAGATGTTGC AGTTTATGGA TAGTTTGTGT
TTGGCAGATG TAGGTTTCTT TTCTAGTCTG TAGGATTCTG CTGTGTTTGG TTTTGTTAGT GTCAACTGCA ATTCAGTCGA
CGCCTTGGAT ATGATCAATT TGTAGTTTAT GCATTGTTGA CTTGGGAAAG TGAAGTCTTT TCCTTAATGT CACGTTAAGA
CTAGGTTAAT GAAAAACACA AATTTATTTA AATGGATTTC TAGTTATGTG ATTACTAGTT TGCTAACCCT CCCCCATAAC
TGAAGGACTT TTGGACCTAA TGTTTGGTTT TTTACACCGA GCTTTTAGCC GGCGAAAAGG GTGGCTAAGC TAATGTATCC
AGGAAACTGT TATCTTTATT TTAGTCAATG TGTGCATGCT CCATATCA

>Vigan.09G197800.01
ATGGACTCGC GCACGTATAA TCCACGCACG GTCGAAGAGG TTTTTAGGGA TTTCAAGGGC CGAAGAGCTG CTCTCATCAA
AGCCCTTACC ACTGATGTTG AAGATTTCTA CAACCAATGT GATCCAGAGA AGGAGAATCT GTGCTTGTAT GGCTTTCCCA
GTGAACAGTG GGAAGTAAAT TTACCTGCTG AAGAAGTACC ACCTGAGCTT CCTGAGCCTG TGCTGGGCAT CAACTTTGCT
AGGGATGGCA TGCAAGAAAA AGACTGGCTA TCTTTAGTTG CTGTCCATAG TGATGCATGG TTACTTGCTA TTGCATTCTA
TTTTGGAGCC AGATTCGGGT TTGATAAAGC TGACAGGAAA CGACTTTTCA ACATGATCAA CGAATTGCCA ACAATATTTG
AAGTTGTTAC TGGTGCAGCA AAGAAGCAAG TTAAGGAGAA GTCTTCTGTT TCAAACCACA GTGGCAGCAA GTCTAAGTCC
AGCTCTAAGG CACAACGAGC TCCAGATTCT CAGAGTAGAC AGTCAAAGCC ATCGCAACCA AAAGAAGAGG ATGAAGAACT
GGATGAACAA GATGATGATG AACATGGAGA GACCTTGTGT GGGGCATGTG GTGAGCATTA TGGCACTGAT GAATTCTGGA
TTTGCTGTGA CATATGTGAG AAATGGTTCC ATGGTAAATG TGTGAAGATT ACACCAGCTA GGGCAGAGCA TATCAAACAA
TACAAGTGTC CCTCATGCAG TAACAAGAGA GCTCGCCCCT GA

>Vigan.09G197800.01
MDSRTYNPRT VEEVFRDFKG RRAALIKALT TDVEDFYNQC DPEKENLCLY GFPSEQWEVN LPAEEVPPEL PEPVLGINFA
RDGMQEKDWL SLVAVHSDAW LLAIAFYFGA RFGFDKADRK RLFNMINELP TIFEVVTGAA KKQVKEKSSV SNHSGSKSKS
SSKAQRAPDS QSRQSKPSQP KEEDEELDEQ DDDEHGETLC GACGEHYGTD EFWICCDICE KWFHGKCVKI TPARAEHIKQ
YKCPSCSNKR ARP*