GBrowse Details

Vigan.09G187200.01

Basic Information:
Name: Vigan.09G187200.01
Multiple alignment
Variant Information
Position: Chr09:33270139..33272000 (+ strand)
Length: 1862
Functional Information:
Description: Similar to protein LURP-one-related 11-like. [XP_003547894.2, Glycine max]
InterPro: LURP1-like domain (IPR007612)
Tubby C-terminal-like domain (IPR025659)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.28,0.00,0.03,1.41,10.62,0.40,117.33,0.07
Arabidopsis thaliana homolog: AT3G14260.1
Automatic updates:
Name: NM_001250654 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527543 (LOC100527543), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:33270139..33270182 (+ strand)
Length: 44
Type: five_prime_UTR
Position: Chr09:33270183..33270437 (+ strand)
Length: 255
Type: CDS
Position: Chr09:33270514..33270744 (+ strand)
Length: 231
Type: CDS
Position: Chr09:33271663..33271797 (+ strand)
Length: 135
Type: CDS
Position: Chr09:33271798..33272000 (+ strand)
Length: 203
Type: three_prime_UTR

>Vigan.09G187200.01 class=Sequence position=Chr09:33270139..33272000 (+ strand)
TATATGATTA TCCCATTAGT ATATAAAAAC CTTTTATCAG TGACATGCTA CACACAATTT CAACCATGGG AAAAGTTTGT
CCCCAAGCAC TAGAATCTTC TACTACCTGC AGTTTCACTT GCAAGCAAGA AACTTTTACC CTATGGATGA AATCTCTTGT
ACTGAATGGA AAAGGGTGCA CTGTCTTTGA TTCCAATGGC CAGATTGCAT ACAGAGTTGA TAACTACAAC TGCAAGCATA
GAGCAGAAGT TCATCTCATG GACCAAAATG GTGATATTTT GTTCACTATG CTAAAAAAGG TAAGCAAATT TCATGCACAG
TCTTTCACAT AAAATAACTG ATGTATAACA TTATTTTAGT CTTTTGTGGT TTCAGCAATA TAAGTTGTCC AGATTCTGGG
AGGGTTATAG ATTTCCAGCA ACAAGAAATG ACCACAAAGG ACCATGCTTT CGAGTTTCAA AAACTTATAA GATCTCTAAA
GGGGGTTCGA TCTATGAAGT TGAACTTGGT TTGGACAAAA ACCAACCCTA TATTCATAAA ATAGAAAGCA GCACCTGCAA
TTCAGCTTGC AAAATATCTA ATGAGGTTGG AGTGGTGGTT GCAGAGGTAA GGTTTCTTAC ATCTTGTTAA TCAGCAAAGT
TTAACCCACC ATTAAGTTCA TAATTCCTCA AATGTCTCAT GAACTCAATT CATTCATCTT TAATATCTAT CAGCGAGGGA
GATATATGCA TAAAAAACAA TGCATTAAAT GAAGATTGTT TAGTTGGTTT TTCTTTTACA CATGTAGTGC AGATTTAGGT
AAAAATTATG GGAATGGGTA AGTTTTAAAT TTGAGTAATG GTTGGCTACC ACACTTTTAT CTTCGTTTGA GATACAATAC
AATACAAGAA TAAAATGATT ATAAAGAAAT AAACTTTATC AAATCAATGT AAAAATTTTA TACGTGTCAA AGTATCATTT
ATTTTTAAAT TTAGGAGTAA TGGTACTTAC ACACTTTTAC ATTCATTTGA CACACAATAT AAGGGTAAAG TGGTTATAAA
GTGTAATTTT TTTTGTATTT TTTCAAGAAA AAAAAGAATA AAAAGTAAAA AAGAATAGTA TGAAATGAAT ATAAAAAATT
TGTGTCTTAA AGAATTATTT TTTTAAATTT ATAGTAACGA TAAACTGACG TACCTTTACA TTCATTTGAC ACATATTACA
AAGATAACAT GATCATAAAA AAGTGAACTT TTATATTTTT AGAAAAAAAA AGTTAAAAAG TAAAGAAAAA TAATGTGAAA
TGAATATAAA AAAGTTGTAT ATCAATGTAT CATCAACTAA GTCATTTGTG TTTTGGAATT GGTTTTTGAA AGGTATGGAT
GTAATGACTT AAGATGTTTT AGTATTATTG AAAATCGATG AATACCTACA AAAAAATATA TATATATATA TATGTAGAAA
GTAGAAGATT GGTAGAAGAA CATAGTAGAA GGATTTTAGA ATTGTTATTA TTATTTTACT TATACCTGTT TTTTGTGTTT
GCAGCTAAGG AGGAAGAAGT CACATAGTGG AGTTGATTTA GGAGATGATG TTTTCACAAT GGTAGTGGAG CAAAATATAG
ATCTTTCTCT AGTTATGGGA CTTGTTGTAG CATACAATCT TATAAACTCT AAAATGTAAG TATTTTGGAA GCAACAGTTT
CCACAACACT AGTGATTTAC ATATTGAGTG AGAATTATAG CACATCGATT GCTAAATACA GTTTCTGTGT TGAGCTTTGC
AGAAAAGTGT GCGTGTGTGA TTAATCAATC ACAAAATGAT TGAAATCAAA TTTAATTTCA CTTTTGTTTT CTTCCGGAAA
TGCAGCCTTT GATTCTCTAC AT

>Vigan.09G187200.01
TATATGATTA TCCCATTAGT ATATAAAAAC CTTTTATCAG TGACATGCTA CACACAATTT CAACCATGGG AAAAGTTTGT
CCCCAAGCAC TAGAATCTTC TACTACCTGC AGTTTCACTT GCAAGCAAGA AACTTTTACC CTATGGATGA AATCTCTTGT
ACTGAATGGA AAAGGGTGCA CTGTCTTTGA TTCCAATGGC CAGATTGCAT ACAGAGTTGA TAACTACAAC TGCAAGCATA
GAGCAGAAGT TCATCTCATG GACCAAAATG GTGATATTTT GTTCACTATG CTAAAAAAGC AATATAAGTT GTCCAGATTC
TGGGAGGGTT ATAGATTTCC AGCAACAAGA AATGACCACA AAGGACCATG CTTTCGAGTT TCAAAAACTT ATAAGATCTC
TAAAGGGGGT TCGATCTATG AAGTTGAACT TGGTTTGGAC AAAAACCAAC CCTATATTCA TAAAATAGAA AGCAGCACCT
GCAATTCAGC TTGCAAAATA TCTAATGAGG TTGGAGTGGT GGTTGCAGAG CTAAGGAGGA AGAAGTCACA TAGTGGAGTT
GATTTAGGAG ATGATGTTTT CACAATGGTA GTGGAGCAAA ATATAGATCT TTCTCTAGTT ATGGGACTTG TTGTAGCATA
CAATCTTATA AACTCTAAAA TGTAAGTATT TTGGAAGCAA CAGTTTCCAC AACACTAGTG ATTTACATAT TGAGTGAGAA
TTATAGCACA TCGATTGCTA AATACAGTTT CTGTGTTGAG CTTTGCAGAA AAGTGTGCGT GTGTGATTAA TCAATCACAA
AATGATTGAA ATCAAATTTA ATTTCACTTT TGTTTTCTTC CGGAAATGCA GCCTTTGATT CTCTACAT

>Vigan.09G187200.01
ATGCTACACA CAATTTCAAC CATGGGAAAA GTTTGTCCCC AAGCACTAGA ATCTTCTACT ACCTGCAGTT TCACTTGCAA
GCAAGAAACT TTTACCCTAT GGATGAAATC TCTTGTACTG AATGGAAAAG GGTGCACTGT CTTTGATTCC AATGGCCAGA
TTGCATACAG AGTTGATAAC TACAACTGCA AGCATAGAGC AGAAGTTCAT CTCATGGACC AAAATGGTGA TATTTTGTTC
ACTATGCTAA AAAAGCAATA TAAGTTGTCC AGATTCTGGG AGGGTTATAG ATTTCCAGCA ACAAGAAATG ACCACAAAGG
ACCATGCTTT CGAGTTTCAA AAACTTATAA GATCTCTAAA GGGGGTTCGA TCTATGAAGT TGAACTTGGT TTGGACAAAA
ACCAACCCTA TATTCATAAA ATAGAAAGCA GCACCTGCAA TTCAGCTTGC AAAATATCTA ATGAGGTTGG AGTGGTGGTT
GCAGAGCTAA GGAGGAAGAA GTCACATAGT GGAGTTGATT TAGGAGATGA TGTTTTCACA ATGGTAGTGG AGCAAAATAT
AGATCTTTCT CTAGTTATGG GACTTGTTGT AGCATACAAT CTTATAAACT CTAAAATGTA A

>Vigan.09G187200.01
MLHTISTMGK VCPQALESST TCSFTCKQET FTLWMKSLVL NGKGCTVFDS NGQIAYRVDN YNCKHRAEVH LMDQNGDILF
TMLKKQYKLS RFWEGYRFPA TRNDHKGPCF RVSKTYKISK GGSIYEVELG LDKNQPYIHK IESSTCNSAC KISNEVGVVV
AELRRKKSHS GVDLGDDVFT MVVEQNIDLS LVMGLVVAYN LINSKM*