Variant information

Chr09:33270139 - 33272000

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
33270323CT612357.771.00SYNONYMOUS_CODING(SILENT|gtC/gtT|V47|None|Vigan.09G187200.01), UPSTREAM(|2758||None|Vigan.09G187300.01)Vigna nepalensis
33270845CT673020.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|2236||None|Vigan.09G187300.01), UPSTREAM(|4677||None|Vigan.09G187400.01)Vigna nepalensis
33270853GA693064.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|2228||None|Vigan.09G187300.01), UPSTREAM(|4669||None|Vigan.09G187400.01)Vigna nepalensis
33270911CT703301.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|2170||None|Vigan.09G187300.01), UPSTREAM(|4611||None|Vigan.09G187400.01)Vigna nepalensis
33270941AC602703.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|2140||None|Vigan.09G187300.01), UPSTREAM(|4581||None|Vigan.09G187400.01)Vigna nepalensis
33271003GA622845.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|2078||None|Vigan.09G187300.01), UPSTREAM(|4519||None|Vigan.09G187400.01)Vigna nepalensis
33271007GC642980.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|2074||None|Vigan.09G187300.01), UPSTREAM(|4515||None|Vigan.09G187400.01)Vigna nepalensis
33271119TC622744.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1962||None|Vigan.09G187300.01), UPSTREAM(|4403||None|Vigan.09G187400.01)Vigna nepalensis
33271142CA673031.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1939||None|Vigan.09G187300.01), UPSTREAM(|4380||None|Vigan.09G187400.01)Vigna nepalensis
33271162GA612896.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1919||None|Vigan.09G187300.01), UPSTREAM(|4360||None|Vigan.09G187400.01)Vigna nepalensis
33271170GC612898.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1911||None|Vigan.09G187300.01), UPSTREAM(|4352||None|Vigan.09G187400.01)Vigna nepalensis
33271227AG522356.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1854||None|Vigan.09G187300.01), UPSTREAM(|4295||None|Vigan.09G187400.01)Vigna nepalensis
33271236GA492311.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1845||None|Vigan.09G187300.01), UPSTREAM(|4286||None|Vigan.09G187400.01)Vigna nepalensis
33271240GC492266.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1841||None|Vigan.09G187300.01), UPSTREAM(|4282||None|Vigan.09G187400.01)Vigna nepalensis
33271249AG512284.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1832||None|Vigan.09G187300.01), UPSTREAM(|4273||None|Vigan.09G187400.01)Vigna nepalensis
33271290TG582630.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1791||None|Vigan.09G187300.01), UPSTREAM(|4232||None|Vigan.09G187400.01)Vigna nepalensis
33271303CG592711.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1778||None|Vigan.09G187300.01), UPSTREAM(|4219||None|Vigan.09G187400.01)Vigna nepalensis
33271308GA592716.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1773||None|Vigan.09G187300.01), UPSTREAM(|4214||None|Vigan.09G187400.01)Vigna nepalensis
33271312CT592761.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1769||None|Vigan.09G187300.01), UPSTREAM(|4210||None|Vigan.09G187400.01)Vigna nepalensis
33271351TC773550.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1730||None|Vigan.09G187300.01), UPSTREAM(|4171||None|Vigan.09G187400.01)Vigna nepalensis
33271352CG773550.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1729||None|Vigan.09G187300.01), UPSTREAM(|4170||None|Vigan.09G187400.01)Vigna nepalensis
33271353AG793550.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1728||None|Vigan.09G187300.01), UPSTREAM(|4169||None|Vigan.09G187400.01)Vigna nepalensis
33271355AG793526.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1726||None|Vigan.09G187300.01), UPSTREAM(|4167||None|Vigan.09G187400.01)Vigna nepalensis
33271371AG713256.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1710||None|Vigan.09G187300.01), UPSTREAM(|4151||None|Vigan.09G187400.01)Vigna nepalensis
33271415GA562131.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1666||None|Vigan.09G187300.01), UPSTREAM(|4107||None|Vigan.09G187400.01)Vigna nepalensis
33271468GC481970.771.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1613||None|Vigan.09G187300.01), UPSTREAM(|4054||None|Vigan.09G187400.01)Vigna nepalensis
33271563TA421058.770.95INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1518||None|Vigan.09G187300.01), UPSTREAM(|3959||None|Vigan.09G187400.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
33270901GGT652965.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|2179||None|Vigan.09G187300.01), UPSTREAM(|4620||None|Vigan.09G187400.01)Vigna nepalensis
33270905GGTTTCT663101.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|2175||None|Vigan.09G187300.01), UPSTREAM(|4616||None|Vigan.09G187400.01)Vigna nepalensis
33270919CCAT643111.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|2161||None|Vigan.09G187300.01), UPSTREAM(|4602||None|Vigan.09G187400.01)Vigna nepalensis
33271020ATACAAGA592622.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|2060||None|Vigan.09G187300.01), UPSTREAM(|4501||None|Vigan.09G187400.01)Vigna nepalensis
33271059AAATCAATGA612822.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|2021||None|Vigan.09G187300.01), UPSTREAM(|4462||None|Vigan.09G187400.01)Vigna nepalensis
33271079TACT683067.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|2001||None|Vigan.09G187300.01), UPSTREAM(|4442||None|Vigan.09G187400.01)Vigna nepalensis
33271084GGTC693134.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1996||None|Vigan.09G187300.01), UPSTREAM(|4437||None|Vigan.09G187400.01)Vigna nepalensis
33271184ATA542350.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1896||None|Vigan.09G187300.01), UPSTREAM(|4337||None|Vigan.09G187400.01)Vigna nepalensis
33271205GAAG562470.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1875||None|Vigan.09G187300.01), UPSTREAM(|4316||None|Vigan.09G187400.01)Vigna nepalensis
33271222AAG552470.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1858||None|Vigan.09G187300.01), UPSTREAM(|4299||None|Vigan.09G187400.01)Vigna nepalensis
33271311CCT592797.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1769||None|Vigan.09G187300.01), UPSTREAM(|4210||None|Vigan.09G187400.01)Vigna nepalensis
33271316AATATT582886.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1764||None|Vigan.09G187300.01), UPSTREAM(|4205||None|Vigan.09G187400.01)Vigna nepalensis
33271318AATT642921.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1762||None|Vigan.09G187300.01), UPSTREAM(|4203||None|Vigan.09G187400.01)Vigna nepalensis
33271382AAG723247.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1698||None|Vigan.09G187300.01), UPSTREAM(|4139||None|Vigan.09G187400.01)Vigna nepalensis
33271389AAAACAG703157.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1691||None|Vigan.09G187300.01), UPSTREAM(|4132||None|Vigan.09G187400.01)Vigna nepalensis
33271435GGTA431823.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1645||None|Vigan.09G187300.01), UPSTREAM(|4086||None|Vigan.09G187400.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
33271554(AT)9(AT)5532230.731.00INTRON(|||None|Vigan.09G187200.01), UPSTREAM(|1526||None|Vigan.09G187300.01), UPSTREAM(|3967||None|Vigan.09G187400.01)Vigna nepalensis