GBrowse Details

Vigan.09G151000.01

Basic Information:
Name: Vigan.09G151000.01
Multiple alignment
Variant Information
Position: Chr09:28654836..28656659 (- strand)
Length: 1824
Functional Information:
Description: Similar to Uncharacterized protein. [I1JKA9, Glycine max]
InterPro: Ribosomal protein S27/S33, mitochondrial (IPR013219)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.41,25.08,21.16,18.02,35.38,71.72,33.54,17.17
Arabidopsis thaliana homolog: AT5G44710.1
Automatic updates:
Name: NM_001361205 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 28S ribosomal protein S33, mitochondrial-like (LOC100775975), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001361206 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 28S ribosomal protein S33, mitochondrial-like (LOC100801934), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:28654836..28655150 (- strand)
Length: 315
Type: three_prime_UTR
Position: Chr09:28655151..28655241 (- strand)
Length: 91
Type: CDS
Position: Chr09:28656282..28656562 (- strand)
Length: 281
Type: CDS
Position: Chr09:28656563..28656659 (- strand)
Length: 97
Type: five_prime_UTR

>Vigan.09G151000.01 class=Sequence position=Chr09:28654836..28656659 (- strand)
GTCTGGGTAG CATAATACAT GAATTTCATA ATTTAAAAAA ACAGGGACAT TATTGGAAAT ACAAATATTT GAGGGGTTAA
AATGTGATTA CAACAAAATG ATCTCACTAA ACCGCTTGGC CTCCATCTCA TTCCTTTTGA GTGGCAGAGC GACTCAGAAA
ACAACGAAGA TGGCTTTGAA GAAGATGTTG GCTGCAGCGA TCAATCAAGG AGTGCCGGAA GCACGAGCAA GGATCTTCGG
CCACCAATTG AATCCCTCTG GCAAGAAATC TCCACACAAG ATTCTCCGCA TGAAGCTCTT CGGTGAAAAA GTCGCTCAGT
GGTACCCTCA CGACATCAAT AAAGACGACC CTCTTGTCAT GGCTCGTCAA GAACAAGAGT ATTCTCTCTC ACAACTCTGT
CTCACTTTGT TGTCCATCGT AATTTGGTTG CACACGCCCG CACGGGAATG CCCACCATCT GTTTGTGTTT ATGCCTCTCT
GATGGTGTTT TTTGTTCTGG TTTCTTCTTG AGTTTCCTGT GGTTTTGTAG CCTGTGAGAG TTTATGTGGT TTTCTTATCT
TGATTAATGA ATGAAATGTT ATTATCAAGT TTTTCTTTTC TGTGGAGGAG TTTGGTTTGC AGTTTTTGTC GTTCTGTGTT
TCCTTTAATC GAGAAGATGT TAAAATGTCT GTTGGCCAAA ATCCCGTTGA CACGATTGGT GTGTGTGGAC GGCATTATGT
TGTTCTGCAT TTGGTATGAA TTTCATAATT TGTTGGCACA TGAGAAATGC ATGTAATACT TTTATTATTA GCTGAAATTG
ATTAAGAAGT ATAAAGTTAT GTAGGTTCCG CACTTTAGTT AATGAGTCTT CACTTGTGAT TTGTACCATT TTTATTAACA
GTGAAATGTC TGTTAGAAGG ATGATTTATG GAGTGTCTTG TTAGCATCCC TCTTCCCTGA ATACGTGGAT ATTAGTAGTC
TACTGTTTTG TTGGTGGGAT TGTTTCCACA CTGGAGGGTA AATTCTACCC TTTAAAATTT TGTCCATTTT GTGTATATGT
TTGTCATCCC TTTCTATTGT ATGCCTTTGA ACTTGGTTTA CAGCTTTTCA AAATAGAACT GTAGAAAGTG CAGGTCTGAT
ATGCAAACTA TATTCTGTTT AAGCAACCTT AGAATAAACT TTATATTGAA GATGGTGGCT GATGACTATG TCTGTTAAGT
TTGAGTGAGA GTTAGTAGAA TATGACTATG TTTAAAATCA GGTGATGTTT GTTTTTTATT TTCGCTGTGA ATATGCTTAT
GTTGTCTTGC ATCAAGTGGT ACATTAAGTC AGTAGAGGGA TGTCTTTTAT GTTCCAGTCA GAATCTCTGG TAACTTCACA
AGTTATCTTA CATGGACTTC CAGGATTCAA CATCATTTGT TATCTTGTTT TTTTCTAGAC GTCTATCCAA GCTTGAAATG
TTGAAGCGGC GAGGGAAAGG ACCACCAAAG AAGGGCCAAG GAAGGCGTGC TGCCAAACGC AACAAATAAA TGAAACTTTC
ACCAGTCACT GGAATCTTGT TGTGGACAGT CTTTTGAGTT AAAGACAACT AGTAGTTCAT GTGATAACAC CATTTAACTT
TTGTTATCAG ATTGTAAACC CAAGCATTTG AGAATTGAAA CCTAATTTGG TTGAAGTCTG TGTCCTCTAT TTGCAATTAG
TTTTTCCGGA ATTGCTTGCA AGCTGGAATG CAACCATAAG ATTACAAAGT AGCCACTTTC TTATTGACTT TGATATTATA
TCCTATCTCA TCTTTATCGC ATTTTATGGG TTGTGAGAAA TTCATTATTA ACATCTTCTT CCAC

>Vigan.09G151000.01
GTCTGGGTAG CATAATACAT GAATTTCATA ATTTAAAAAA ACAGGGACAT TATTGGAAAT ACAAATATTT GAGGGGTTAA
AATGTGATTA CAACAAAATG ATCTCACTAA ACCGCTTGGC CTCCATCTCA TTCCTTTTGA GTGGCAGAGC GACTCAGAAA
ACAACGAAGA TGGCTTTGAA GAAGATGTTG GCTGCAGCGA TCAATCAAGG AGTGCCGGAA GCACGAGCAA GGATCTTCGG
CCACCAATTG AATCCCTCTG GCAAGAAATC TCCACACAAG ATTCTCCGCA TGAAGCTCTT CGGTGAAAAA GTCGCTCAGT
GGTACCCTCA CGACATCAAT AAAGACGACC CTCTTGTCAT GGCTCGTCAA GAACAAGAAC GTCTATCCAA GCTTGAAATG
TTGAAGCGGC GAGGGAAAGG ACCACCAAAG AAGGGCCAAG GAAGGCGTGC TGCCAAACGC AACAAATAAA TGAAACTTTC
ACCAGTCACT GGAATCTTGT TGTGGACAGT CTTTTGAGTT AAAGACAACT AGTAGTTCAT GTGATAACAC CATTTAACTT
TTGTTATCAG ATTGTAAACC CAAGCATTTG AGAATTGAAA CCTAATTTGG TTGAAGTCTG TGTCCTCTAT TTGCAATTAG
TTTTTCCGGA ATTGCTTGCA AGCTGGAATG CAACCATAAG ATTACAAAGT AGCCACTTTC TTATTGACTT TGATATTATA
TCCTATCTCA TCTTTATCGC ATTTTATGGG TTGTGAGAAA TTCATTATTA ACATCTTCTT CCAC

>Vigan.09G151000.01
ATGATCTCAC TAAACCGCTT GGCCTCCATC TCATTCCTTT TGAGTGGCAG AGCGACTCAG AAAACAACGA AGATGGCTTT
GAAGAAGATG TTGGCTGCAG CGATCAATCA AGGAGTGCCG GAAGCACGAG CAAGGATCTT CGGCCACCAA TTGAATCCCT
CTGGCAAGAA ATCTCCACAC AAGATTCTCC GCATGAAGCT CTTCGGTGAA AAAGTCGCTC AGTGGTACCC TCACGACATC
AATAAAGACG ACCCTCTTGT CATGGCTCGT CAAGAACAAG AACGTCTATC CAAGCTTGAA ATGTTGAAGC GGCGAGGGAA
AGGACCACCA AAGAAGGGCC AAGGAAGGCG TGCTGCCAAA CGCAACAAAT AA

>Vigan.09G151000.01
MISLNRLASI SFLLSGRATQ KTTKMALKKM LAAAINQGVP EARARIFGHQ LNPSGKKSPH KILRMKLFGE KVAQWYPHDI
NKDDPLVMAR QEQERLSKLE MLKRRGKGPP KKGQGRRAAK RNK*