Variant information

Chr09:28654836 - 28656659

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
28654900TG572202.771.00UPSTREAM(|4505||None|Vigan.09G151100.01), UTR_3_PRIME(|251||None|Vigan.09G151000.01)Vigna nepalensis
28654928CT451751.771.00UPSTREAM(|4477||None|Vigan.09G151100.01), UTR_3_PRIME(|223||None|Vigan.09G151000.01)Vigna nepalensis
28655002GA582325.771.00UPSTREAM(|4403||None|Vigan.09G151100.01), UTR_3_PRIME(|149||None|Vigan.09G151000.01)Vigna nepalensis
28655111CG622456.771.00UPSTREAM(|4294||None|Vigan.09G151100.01), UTR_3_PRIME(|40||None|Vigan.09G151000.01)Vigna nepalensis
28655278TA542205.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|4127||None|Vigan.09G151100.01)Vigna nepalensis
28655301GC632569.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|4104||None|Vigan.09G151100.01)Vigna nepalensis
28655388AT622488.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|4017||None|Vigan.09G151100.01)Vigna nepalensis
28655445CT551981.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3960||None|Vigan.09G151100.01)Vigna nepalensis
28655511AC542097.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3894||None|Vigan.09G151100.01)Vigna nepalensis
28655561GT522098.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3844||None|Vigan.09G151100.01)Vigna nepalensis
28655608AC491893.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3797||None|Vigan.09G151100.01)Vigna nepalensis
28655666CT481884.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3739||None|Vigan.09G151100.01)Vigna nepalensis
28655794GT451988.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3611||None|Vigan.09G151100.01)Vigna nepalensis
28655813AG472176.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3592||None|Vigan.09G151100.01), UPSTREAM(|5000||None|Vigan.09G151200.01)Vigna nepalensis
28655819TA502348.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3586||None|Vigan.09G151100.01), UPSTREAM(|4994||None|Vigan.09G151200.01)Vigna nepalensis
28655830CG532452.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3575||None|Vigan.09G151100.01), UPSTREAM(|4983||None|Vigan.09G151200.01)Vigna nepalensis
28655889TC552615.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3516||None|Vigan.09G151100.01), UPSTREAM(|4924||None|Vigan.09G151200.01)Vigna nepalensis
28655904CT612662.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3501||None|Vigan.09G151100.01), UPSTREAM(|4909||None|Vigan.09G151200.01)Vigna nepalensis
28655970TC471786.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3435||None|Vigan.09G151100.01), UPSTREAM(|4843||None|Vigan.09G151200.01)Vigna nepalensis
28656181GA461685.770.98INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3224||None|Vigan.09G151100.01), UPSTREAM(|4632||None|Vigan.09G151200.01)Vigna nepalensis
28656254AT331314.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3151||None|Vigan.09G151100.01), UPSTREAM(|4559||None|Vigan.09G151200.01)Vigna nepalensis
28656270GA321265.771.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3135||None|Vigan.09G151100.01), UPSTREAM(|4543||None|Vigan.09G151200.01)Vigna nepalensis
28656593TA501971.771.00UPSTREAM(|2812||None|Vigan.09G151100.01), UPSTREAM(|4220||None|Vigan.09G151200.01), UTR_5_PRIME(|31||None|Vigan.09G151000.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
28655066AAATTC642988.731.00UPSTREAM(|4338||None|Vigan.09G151100.01), UTR_3_PRIME(|84||None|Vigan.09G151000.01)Vigna nepalensis
28655866CAGCTAATAATAAAAGTAC572573.731.00INTRON(|||None|Vigan.09G151000.01), UPSTREAM(|3538||None|Vigan.09G151100.01), UPSTREAM(|4946||None|Vigan.09G151200.01)Vigna nepalensis
28656521CCAGAACTG492178.731.00FRAME_SHIFT(|ttg/ttCAGTTCTg|L14FSS?|None|Vigan.09G151000.01), UPSTREAM(|2883||None|Vigan.09G151100.01), UPSTREAM(|4291||None|Vigan.09G151200.01)Vigna nepalensis