GBrowse Details

Vigan.09G050700.01

Basic Information:
Name: Vigan.09G050700.01
Multiple alignment
Variant Information
Position: Chr09:6675061..6677760 (+ strand)
Length: 2700
Functional Information:
Description: Similar to CM0216.310.nc protein. [B0BLH9, Lotus japonicus]
GO: Biological Process: small GTPase mediated signal transduction (GO:0007264)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Alpha/gamma-adaptin-binding protein p34 (IPR019341)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.95,30.97,19.09,22.05,21.73,11.56,22.37,20.03
Arabidopsis thaliana homolog: AT5G65960.1
Automatic updates:
Name: NM_001255158 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max P-loop NTPase domain-containing protein (LOC100813878), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:6675061..6675187 (+ strand)
Length: 127
Type: five_prime_UTR
Position: Chr09:6675188..6675281 (+ strand)
Length: 94
Type: CDS
Position: Chr09:6675649..6675709 (+ strand)
Length: 61
Type: CDS
Position: Chr09:6675803..6675938 (+ strand)
Length: 136
Type: CDS
Position: Chr09:6676143..6676464 (+ strand)
Length: 322
Type: CDS
Position: Chr09:6676754..6676882 (+ strand)
Length: 129
Type: CDS
Position: Chr09:6676983..6677437 (+ strand)
Length: 455
Type: CDS
Position: Chr09:6677438..6677760 (+ strand)
Length: 323
Type: three_prime_UTR

>Vigan.09G050700.01 class=Sequence position=Chr09:6675061..6677760 (+ strand)
GATACATCCA AGGGCCTCTA AGGGTCCAAA TTAATGCCAA AGGGTGACAC CAACAATTAC AGAGACTGGA AGAAGAAGAA
GAGGAAACAG CAGAGTAAAA GGGAACAATC CAAACCCGGA ACTTCCCATG GATGCTACCG AATCGCAAAC GGATCTGCAG
AACCGACCCG GAATCTTCAT CATAGGATCC TCAAACGTTG GCAAACGCAC CATCATATCT CGTAACTCTC TCTTTCCTTT
TTCTTTCCTA GAATCTTCGT CCTTTCACAT TGCTTCAACT TATTCTACTT AACTAATCTT TAATTAGTTC TAGGTTTTCA
TTATTCTGTC TCCTGCAACT GTTTTAAATC ACATCTTCAG CATATTTTGT TCTTAGATAT ATTATTATAC ATCTTTTTAA
TTTTAAACAT AGGATTTTTT ATTTTTCCTT TTCAATTTTA ATGTTTTGGA TTTTTGTCTA GATGTTCTGG TATTACTTAA
TTCAATTCTT TGTTCTGCAT GCTTTATGTT TTCCAGAATT GTTTATTGTT GTTATTTTGA GGGGTGAAAC TGAAATTTGA
TATATGTCGT TGCTGTTGTT GAGGATAGGA CTGACCTCTG TTGATGTTGA GGATGCTTTT GATTCGGCTT CTGAAGTGAA
TGTCCATGGG TATATGTTCA CCCTGAATTA TTTTATCCAT CTTTTTGGTT ATGAATATTT CTGAATTTCT GGGTGTATTT
GTTTTAATTG TGGAATAAAC AGGTGGACTA TCAATAATAA GTACTATACT GCTGATGTTT CTATATGGAT GGCTCATCTT
CGTGATGATT ATTCTGCTGG TAACATGTCC ATGTTTCGAC ACATGACTGC ATTGGTGATG GTTTTTGACA TGAATGAAGT
TAGTTCCTTC ACTTCATGAT TGTCGTTTGA CTTGTACTGT TTTTGCTTTC GATGACGGTT TAATTTTGTA TTCACTGCTT
ATTGTTTTGG TTTTATGTGT GCAGAAGAAT TATTCTTGAA CCATTTTCTT TTTTTTGTGC CTGGTATTCA TTAGTGGTGA
CAAGTACATG TAATGTATCT TTAATTTACC CTTTTTATGA AGCCATCTTC CCTAGCTGCA CTTCGAGAAT GGGTGTCTCA
CACTGATATT CAGAACTTTG AGATTTTACT GTGTATTGGA AACAAAGTGG ATCTGGTTTC TGGGCATCCA GCTCATGCTG
AATACAGAAG GCGGTTGCTG AAACTAGAAG ACTCTGCTGT AGATCATTAT TCAGAAGAGT ATGGAATATC TGAATCAGAG
GGAACTAGTT TATTGGGGGA TGAGGCACCA GCATGGGACA TCAGAAGGTC CTGTTTAGAA TGGTGCACTG ATCACAATAT
TGAGTTCATC GAGGCATGTG CTTCCAATGC TGATTTTGAC AAATGTAAAA CTTCACTTCC TGTTGTAAAG AACCTGTCGA
TAACATATGC ATTTAACTCT GAATTTTGCT TTGACAAATG CTAAGTTTAG ATGTACATGA GTCATACTTA TAATACATTA
TTAACAAGAG AGGAAGGTAG GTGACTTAGA TGACAATGAA ATATTTGGAA GATGATTAAT GATAGATAAT TGTAACACGC
ATCATATATT TTTCTGCTCC CCATTAGGGA TAGAATGATG AACATTGAAA ACCATTTCAG ATTATATGAT TTCCACTCAA
ATTTATTTTA CAGGTTTGTC CATAGATGGT GATTTACAAG GAGTTGAACG TCTCCATGGT GCACTTTCTG CTCATATGTG
GTCTGGAATG GTATTGAAAT CTGGGGATAG GATAAATCAA CCATCATTTC CTGAGAAAGA GGGTATTTTC TTTCTTTTTT
TTTTTGTTTG AACCATGCTA CTCGCTACTT TTGTCAAAGT AGAATAAATG CAAGCACTAA TTTTGGTTTA TCCTTTTCCC
AGAGTTATCT TCAGAAGAAT CTGACTATGA ACCTGAATAT GAAGTATTAT CAGCTGGTTC GGCTGATCCC TGGTATGAAA
GTGAACAAGT ATGGGTTTCT GCATCTTCCT TAGAAGCAGG GGGATCAGCT CCTCAAAACA ATCCTAGTGC AGAGGGTCAA
CAGGAGGATG GAATTAAACC TGATAAAGAG TTTGCGCCCA CAACTTCAAG TGATGCAATT CAAGATGAAA GTGAGAGGGA
TGTGCTGCAC AATACCATGG ATTCTGAAGG AGATGAAAAG GCAGTCGAAG GTAAATATCT TGACTTAGAG GATTTGGAAC
AGTTGATGTC TGAGATTGGG AATATGCGTG CAGGCTTAAG ATTGATGCCT GATTTTCAAA GAAGGGACAT GGCAGCAAAG
CTGGCCATGA AAATGGCTTC CATTTTTGGA GGAGAGAGTG ACGATGAGAA AATTTAGTTG ATTTTGGATG TAAGCTCAGT
GATTAGTTAT AGGTTTAAGG TTAGATAGAT GAATGTCATT CTGGTTATGC TTCTGCTCTG TTACTCTTTT TAAGGTCAAG
TATTCCTGTT TTCTCTACAC AGTTTTATAG TCTGTATTTT CTGGAGCAGA ACATTTTGCT AAAAATTTCG TGGTAATTAA
CGTGGTGGTG ATGTTGTGAA AAACTGTCAG GTTACTTCCT GCTGCAGTTG TAAGTGTAGA ACAGATTGAA AACGTACAGG
GACAAAATGA CAAATAAAAT GTCTAAATTT ATTTTTTACC AAGTCCCATA TTCATATAAA 

>Vigan.09G050700.01
GATACATCCA AGGGCCTCTA AGGGTCCAAA TTAATGCCAA AGGGTGACAC CAACAATTAC AGAGACTGGA AGAAGAAGAA
GAGGAAACAG CAGAGTAAAA GGGAACAATC CAAACCCGGA ACTTCCCATG GATGCTACCG AATCGCAAAC GGATCTGCAG
AACCGACCCG GAATCTTCAT CATAGGATCC TCAAACGTTG GCAAACGCAC CATCATATCT CGACTGACCT CTGTTGATGT
TGAGGATGCT TTTGATTCGG CTTCTGAAGT GAATGTCCAT GGGTGGACTA TCAATAATAA GTACTATACT GCTGATGTTT
CTATATGGAT GGCTCATCTT CGTGATGATT ATTCTGCTGG TAACATGTCC ATGTTTCGAC ACATGACTGC ATTGGTGATG
GTTTTTGACA TGAATGAACC ATCTTCCCTA GCTGCACTTC GAGAATGGGT GTCTCACACT GATATTCAGA ACTTTGAGAT
TTTACTGTGT ATTGGAAACA AAGTGGATCT GGTTTCTGGG CATCCAGCTC ATGCTGAATA CAGAAGGCGG TTGCTGAAAC
TAGAAGACTC TGCTGTAGAT CATTATTCAG AAGAGTATGG AATATCTGAA TCAGAGGGAA CTAGTTTATT GGGGGATGAG
GCACCAGCAT GGGACATCAG AAGGTCCTGT TTAGAATGGT GCACTGATCA CAATATTGAG TTCATCGAGG CATGTGCTTC
CAATGCTGAT TTTGACAAAT GTTTGTCCAT AGATGGTGAT TTACAAGGAG TTGAACGTCT CCATGGTGCA CTTTCTGCTC
ATATGTGGTC TGGAATGGTA TTGAAATCTG GGGATAGGAT AAATCAACCA TCATTTCCTG AGAAAGAGGA GTTATCTTCA
GAAGAATCTG ACTATGAACC TGAATATGAA GTATTATCAG CTGGTTCGGC TGATCCCTGG TATGAAAGTG AACAAGTATG
GGTTTCTGCA TCTTCCTTAG AAGCAGGGGG ATCAGCTCCT CAAAACAATC CTAGTGCAGA GGGTCAACAG GAGGATGGAA
TTAAACCTGA TAAAGAGTTT GCGCCCACAA CTTCAAGTGA TGCAATTCAA GATGAAAGTG AGAGGGATGT GCTGCACAAT
ACCATGGATT CTGAAGGAGA TGAAAAGGCA GTCGAAGGTA AATATCTTGA CTTAGAGGAT TTGGAACAGT TGATGTCTGA
GATTGGGAAT ATGCGTGCAG GCTTAAGATT GATGCCTGAT TTTCAAAGAA GGGACATGGC AGCAAAGCTG GCCATGAAAA
TGGCTTCCAT TTTTGGAGGA GAGAGTGACG ATGAGAAAAT TTAGTTGATT TTGGATGTAA GCTCAGTGAT TAGTTATAGG
TTTAAGGTTA GATAGATGAA TGTCATTCTG GTTATGCTTC TGCTCTGTTA CTCTTTTTAA GGTCAAGTAT TCCTGTTTTC
TCTACACAGT TTTATAGTCT GTATTTTCTG GAGCAGAACA TTTTGCTAAA AATTTCGTGG TAATTAACGT GGTGGTGATG
TTGTGAAAAA CTGTCAGGTT ACTTCCTGCT GCAGTTGTAA GTGTAGAACA GATTGAAAAC GTACAGGGAC AAAATGACAA
ATAAAATGTC TAAATTTATT TTTTACCAAG TCCCATATTC ATATAAA

>Vigan.09G050700.01
ATGGATGCTA CCGAATCGCA AACGGATCTG CAGAACCGAC CCGGAATCTT CATCATAGGA TCCTCAAACG TTGGCAAACG
CACCATCATA TCTCGACTGA CCTCTGTTGA TGTTGAGGAT GCTTTTGATT CGGCTTCTGA AGTGAATGTC CATGGGTGGA
CTATCAATAA TAAGTACTAT ACTGCTGATG TTTCTATATG GATGGCTCAT CTTCGTGATG ATTATTCTGC TGGTAACATG
TCCATGTTTC GACACATGAC TGCATTGGTG ATGGTTTTTG ACATGAATGA ACCATCTTCC CTAGCTGCAC TTCGAGAATG
GGTGTCTCAC ACTGATATTC AGAACTTTGA GATTTTACTG TGTATTGGAA ACAAAGTGGA TCTGGTTTCT GGGCATCCAG
CTCATGCTGA ATACAGAAGG CGGTTGCTGA AACTAGAAGA CTCTGCTGTA GATCATTATT CAGAAGAGTA TGGAATATCT
GAATCAGAGG GAACTAGTTT ATTGGGGGAT GAGGCACCAG CATGGGACAT CAGAAGGTCC TGTTTAGAAT GGTGCACTGA
TCACAATATT GAGTTCATCG AGGCATGTGC TTCCAATGCT GATTTTGACA AATGTTTGTC CATAGATGGT GATTTACAAG
GAGTTGAACG TCTCCATGGT GCACTTTCTG CTCATATGTG GTCTGGAATG GTATTGAAAT CTGGGGATAG GATAAATCAA
CCATCATTTC CTGAGAAAGA GGAGTTATCT TCAGAAGAAT CTGACTATGA ACCTGAATAT GAAGTATTAT CAGCTGGTTC
GGCTGATCCC TGGTATGAAA GTGAACAAGT ATGGGTTTCT GCATCTTCCT TAGAAGCAGG GGGATCAGCT CCTCAAAACA
ATCCTAGTGC AGAGGGTCAA CAGGAGGATG GAATTAAACC TGATAAAGAG TTTGCGCCCA CAACTTCAAG TGATGCAATT
CAAGATGAAA GTGAGAGGGA TGTGCTGCAC AATACCATGG ATTCTGAAGG AGATGAAAAG GCAGTCGAAG GTAAATATCT
TGACTTAGAG GATTTGGAAC AGTTGATGTC TGAGATTGGG AATATGCGTG CAGGCTTAAG ATTGATGCCT GATTTTCAAA
GAAGGGACAT GGCAGCAAAG CTGGCCATGA AAATGGCTTC CATTTTTGGA GGAGAGAGTG ACGATGAGAA AATTTAG

>Vigan.09G050700.01
MDATESQTDL QNRPGIFIIG SSNVGKRTII SRLTSVDVED AFDSASEVNV HGWTINNKYY TADVSIWMAH LRDDYSAGNM
SMFRHMTALV MVFDMNEPSS LAALREWVSH TDIQNFEILL CIGNKVDLVS GHPAHAEYRR RLLKLEDSAV DHYSEEYGIS
ESEGTSLLGD EAPAWDIRRS CLEWCTDHNI EFIEACASNA DFDKCLSIDG DLQGVERLHG ALSAHMWSGM VLKSGDRINQ
PSFPEKEELS SEESDYEPEY EVLSAGSADP WYESEQVWVS ASSLEAGGSA PQNNPSAEGQ QEDGIKPDKE FAPTTSSDAI
QDESERDVLH NTMDSEGDEK AVEGKYLDLE DLEQLMSEIG NMRAGLRLMP DFQRRDMAAK LAMKMASIFG GESDDEKI*