GBrowse Details

Vigan.09G021100.01

Basic Information:
Name: Vigan.09G021100.01
Multiple alignment
Variant Information
Position: Chr09:2322193..2324557 (+ strand)
Length: 2365
Functional Information:
Description: Similar to Uncharacterized protein. [I1L2M0, Glycine max]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:46.48,27.66,19.80,26.16,27.05,23.54,20.65,22.04
Automatic updates:
Name: NM_001255744 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MKI67 FHA domain-interacting nucleolar phosphoprotein-like (LOC100814276), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:2322193..2322314 (+ strand)
Length: 122
Type: five_prime_UTR
Position: Chr09:2322315..2322398 (+ strand)
Length: 84
Type: CDS
Position: Chr09:2322509..2322623 (+ strand)
Length: 115
Type: CDS
Position: Chr09:2322698..2322753 (+ strand)
Length: 56
Type: CDS
Position: Chr09:2323354..2323401 (+ strand)
Length: 48
Type: CDS
Position: Chr09:2323484..2323581 (+ strand)
Length: 98
Type: CDS
Position: Chr09:2323860..2323929 (+ strand)
Length: 70
Type: CDS
Position: Chr09:2324017..2324199 (+ strand)
Length: 183
Type: CDS
Position: Chr09:2324200..2324557 (+ strand)
Length: 358
Type: three_prime_UTR

>Vigan.09G021100.01 class=Sequence position=Chr09:2322193..2324557 (+ strand)
ATCAGCCTTA AAATATTGAG TCTGATAGAC CTGGGTTAGG GTTTTAACGC AATCCCTCGC CACCCTCGTT TACTATATCT
TGTTTCTTTG CAGAGAAGTA GTTAGGCATA ACAGACAGTG AGATGGGAAC AAAGGCAAAG AAAGCTATGA AGAAGAACAT
GAAAAAGGCT TCCTCTAACA AGCCATCTGA GGGTGCTGAT TTTTTGGTAA GTTGATAATA CCGATTCTGT GTGCTCTCTG
TTCAGTTAAC TTTTCCTTTT ATTTTTCAAT TTATTGTGTC AGTATGGTGC TTAATTTTGT TTCTGAATTG GTAAAGCCCT
TGGAAGGTGG TCCTGCTCGC AAGCTCGCCG AACAGAAGCC GCCGGAGAAT ACCTCCACGG TATTGTACGT ATCCAGGATT
CCGCATGGAT TCTATGAGAA GGAGATGGAA GGTGCTCATG GATTTTTCTT TTGTCAGATT TTTTATGGAT TTTGTGGAGT
GTGTGTTTAC GATTGCATTT TGTAGGTTAT TTTGGTCAAT TTGGAACCAT CAAAAGGTTG AGAATCGCGA GAAATAAAAA
GGTTAGTTGC TTGCATGTTA ACTTGTCTAC TTTAATGTCC GTGCTTGTTA TTATTTGCAT TATTGTGTGA TTTTGTCAAT
TTGATAATTG TGGCATACTT TGTTTATTCT GATCTATTTA CTCATGTAGT TAATTTTACC TGTGGATTCA GTGATTATTT
TTGTATAATC TTTTATTCTG GTGGATGGGT GTGTGACTGT GCACGATATC ATCAGGATAG ATAATGCACC CTAAAGAGTT
GTCAATTTTG ACACAATGCA ATGTATGGTT GTGTGGCGAA AAATTACTTT TCTTGTCTCG TGCTTTATTT GTTCGTGAGT
GGTCTTAATT TAAGAAACTG TTCCAATGCA GAATATCTGT TGTGTCGTTA ATAGTTATGA GTTTCTCAGA GAAGTTGAAG
CCTCTGCAAT CAATCAATAT TGTAGTAATT TTGCTTTTGT TTGGTCCTTA CATTCTGAAA AAAACTATGG GTTTTCAACC
AACCATCAAG ATATTTGTTT CTTTAAATTC TTTGGGGCTG CAATATTTAC CCTTTTAGTG ATGATGGATA TTGGTTTTAG
TTGATTGATA CTGACAATAT ATGTTTCTTG TTCTTTAACA GACAGGAAAA TCAAGACATT TTGGGTACAT AGAATTTGAA
TCTCCTGAGG TATTTGTTGT TTCTGCAGAT TAATTGATTG TGTTTGTAAT AAAATTCAGT TTCCTTGTTT TAATAGTGCC
TTGATTTGTA GGTTGCGAAA ATTGTAGCTG ATACTATGCA CAATTATCTC CTTTTCGAGC ACCTTCTCCA AGTTCATGTT
GTACCTCCGG AGAATGTTCA TTCAAGATTG TAAGTTATTA ATGAAATTTT TTCCGGATCT ATTTCCTTCT AAGGATTCCC
TTTGTAGACT TTAGTGTGTC TAACCTTCAA TTTTCTTTCC ACCTCCTTCT TTTACACGTG TGAAAAAGAA AGATATCTAT
TTAGAGTATT GAAAAAAATC ACTAACGAAT AGAGAATTAG GAATTCCCTC AAACATACAT GTACCTTGGT TTAAGGTTTA
AAGATTTAGT TTCTTCTTTG AATATGACCA AAGGTAACAA ATGAATGTGT GGCATTTTTC ATCGTAGATG GAGAGGATTC
AGTTATCGTC ACAAGCCATT GGATTATGTC CAAATTGAAC GGAAGCGTCA TGACAAGGTA TCTAGTTCAT TGGATAATAA
AGTATATCTG CTTGATATTT CTCGTCTGAT TCTCAGTATT AAGTTCTTGA TGCTGTCATT CCAGGAAAGA ACCTTAGACG
AGCACAAAAA ATTGGTGGAG AGGATTCTAA AACATGACCA AAAACGACGG AAAAGGATAG AGGCTGCTGG CATTGATTAC
GAAAGCCCTG AGATTGTGAG CCTTTTGCTT TTATCATTCT GTGGTGGTTC ATTTCTTTTC ACAAATAGAG AATATTCTGC
ATCTTGAGTT TTGCTCTCAT TTTGCATATA TAATTGTTCT TTGCAGATGG GTAACATCCA GCCTGCTCCA AAGAAAATAA
AGTTTGATGA CTGAGTTGGT AACCTGGAAC ACAGGAGTCT GCTGGTTTAG GATTTTTAGT TTTAATATTT TCGCAGTTTT
GGAACTTAGT TCTGAAACCT TGTATCCGTC AAATGTTTAC AGGAAGCATG ATCCATTTTA TATATTCATA AACTTTTTAA
GCAGTTGATC ACCTTCAGGC TCATTACTGT TTTACTTCTT TTTTGGTCTT CAATTGCACT CTTAATTAGA GTTTGCGCAC
ATTTATTGCT TCGTTTTTTA ATTTTTGTTA ACATTGACAA TCTGG

>Vigan.09G021100.01
ATCAGCCTTA AAATATTGAG TCTGATAGAC CTGGGTTAGG GTTTTAACGC AATCCCTCGC CACCCTCGTT TACTATATCT
TGTTTCTTTG CAGAGAAGTA GTTAGGCATA ACAGACAGTG AGATGGGAAC AAAGGCAAAG AAAGCTATGA AGAAGAACAT
GAAAAAGGCT TCCTCTAACA AGCCATCTGA GGGTGCTGAT TTTTTGCCCT TGGAAGGTGG TCCTGCTCGC AAGCTCGCCG
AACAGAAGCC GCCGGAGAAT ACCTCCACGG TATTGTACGT ATCCAGGATT CCGCATGGAT TCTATGAGAA GGAGATGGAA
GGTTATTTTG GTCAATTTGG AACCATCAAA AGGTTGAGAA TCGCGAGAAA TAAAAAGACA GGAAAATCAA GACATTTTGG
GTACATAGAA TTTGAATCTC CTGAGGTTGC GAAAATTGTA GCTGATACTA TGCACAATTA TCTCCTTTTC GAGCACCTTC
TCCAAGTTCA TGTTGTACCT CCGGAGAATG TTCATTCAAG ATTATGGAGA GGATTCAGTT ATCGTCACAA GCCATTGGAT
TATGTCCAAA TTGAACGGAA GCGTCATGAC AAGGAAAGAA CCTTAGACGA GCACAAAAAA TTGGTGGAGA GGATTCTAAA
ACATGACCAA AAACGACGGA AAAGGATAGA GGCTGCTGGC ATTGATTACG AAAGCCCTGA GATTGTGAGC CTTTTGCTTT
TATCATTCTG TGGTGGTTCA TTTCTTTTCA CAAATAGAGA ATATTCTGCA TCTTGAGTTT TGCTCTCATT TTGCATATAT
AATTGTTCTT TGCAGATGGG TAACATCCAG CCTGCTCCAA AGAAAATAAA GTTTGATGAC TGAGTTGGTA ACCTGGAACA
CAGGAGTCTG CTGGTTTAGG ATTTTTAGTT TTAATATTTT CGCAGTTTTG GAACTTAGTT CTGAAACCTT GTATCCGTCA
AATGTTTACA GGAAGCATGA TCCATTTTAT ATATTCATAA ACTTTTTAAG CAGTTGATCA CCTTCAGGCT CATTACTGTT
TTACTTCTTT TTTGGTCTTC AATTGCACTC TTAATTAGAG TTTGCGCACA TTTATTGCTT CGTTTTTTAA TTTTTGTTAA
CATTGACAAT CTGG

>Vigan.09G021100.01
ATGGGAACAA AGGCAAAGAA AGCTATGAAG AAGAACATGA AAAAGGCTTC CTCTAACAAG CCATCTGAGG GTGCTGATTT
TTTGCCCTTG GAAGGTGGTC CTGCTCGCAA GCTCGCCGAA CAGAAGCCGC CGGAGAATAC CTCCACGGTA TTGTACGTAT
CCAGGATTCC GCATGGATTC TATGAGAAGG AGATGGAAGG TTATTTTGGT CAATTTGGAA CCATCAAAAG GTTGAGAATC
GCGAGAAATA AAAAGACAGG AAAATCAAGA CATTTTGGGT ACATAGAATT TGAATCTCCT GAGGTTGCGA AAATTGTAGC
TGATACTATG CACAATTATC TCCTTTTCGA GCACCTTCTC CAAGTTCATG TTGTACCTCC GGAGAATGTT CATTCAAGAT
TATGGAGAGG ATTCAGTTAT CGTCACAAGC CATTGGATTA TGTCCAAATT GAACGGAAGC GTCATGACAA GGAAAGAACC
TTAGACGAGC ACAAAAAATT GGTGGAGAGG ATTCTAAAAC ATGACCAAAA ACGACGGAAA AGGATAGAGG CTGCTGGCAT
TGATTACGAA AGCCCTGAGA TTGTGAGCCT TTTGCTTTTA TCATTCTGTG GTGGTTCATT TCTTTTCACA AATAGAGAAT
ATTCTGCATC TTGA

>Vigan.09G021100.01
MGTKAKKAMK KNMKKASSNK PSEGADFLPL EGGPARKLAE QKPPENTSTV LYVSRIPHGF YEKEMEGYFG QFGTIKRLRI
ARNKKTGKSR HFGYIEFESP EVAKIVADTM HNYLLFEHLL QVHVVPPENV HSRLWRGFSY RHKPLDYVQI ERKRHDKERT
LDEHKKLVER ILKHDQKRRK RIEAAGIDYE SPEIVSLLLL SFCGGSFLFT NREYSAS*