Variant information

Chr09:2322193 - 2324557

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
2322248CG491932.771.00DOWNSTREAM(|4305||None|Vigan.09G020900.01), UPSTREAM(|1808||None|Vigan.09G021000.01), UTR_5_PRIME(|67||None|Vigan.09G021100.01)Vigna nepalensis
2322260GA532374.771.00DOWNSTREAM(|4317||None|Vigan.09G020900.01), UPSTREAM(|1820||None|Vigan.09G021000.01), UTR_5_PRIME(|55||None|Vigan.09G021100.01)Vigna nepalensis
2322266TG532394.771.00DOWNSTREAM(|4323||None|Vigan.09G020900.01), UPSTREAM(|1826||None|Vigan.09G021000.01), UTR_5_PRIME(|49||None|Vigan.09G021100.01)Vigna nepalensis
2322292AT482127.771.00DOWNSTREAM(|4349||None|Vigan.09G020900.01), START_GAINED(|||None|Vigan.09G021100.01), UPSTREAM(|1852||None|Vigan.09G021000.01), UTR_5_PRIME(|23||None|Vigan.09G021100.01)Vigna nepalensis
2322299CT462036.771.00DOWNSTREAM(|4356||None|Vigan.09G020900.01), UPSTREAM(|1859||None|Vigan.09G021000.01), UTR_5_PRIME(|16||None|Vigan.09G021100.01)Vigna nepalensis
2322358AG562235.771.00DOWNSTREAM(|4415||None|Vigan.09G020900.01), NON_SYNONYMOUS_CODING(MISSENSE|aAg/aGg|K15R|None|Vigan.09G021100.01), UPSTREAM(|1918||None|Vigan.09G021000.01)Vigna nepalensis
2322497GA431914.771.00DOWNSTREAM(|4554||None|Vigan.09G020900.01), INTRON(|||None|Vigan.09G021100.01), UPSTREAM(|2057||None|Vigan.09G021000.01)Vigna nepalensis
2322577GA431781.771.00DOWNSTREAM(|4634||None|Vigan.09G020900.01), SYNONYMOUS_CODING(SILENT|ttG/ttA|L51|None|Vigan.09G021100.01), UPSTREAM(|2137||None|Vigan.09G021000.01)Vigna nepalensis
2322694GT562208.771.00DOWNSTREAM(|4751||None|Vigan.09G020900.01), INTRON(|||None|Vigan.09G021100.01), SPLICE_SITE_REGION(|||None|Vigan.09G021100.01), UPSTREAM(|2254||None|Vigan.09G021000.01)Vigna nepalensis
2322841TG602394.771.00DOWNSTREAM(|4898||None|Vigan.09G020900.01), INTRON(|||None|Vigan.09G021100.01), UPSTREAM(|2401||None|Vigan.09G021000.01)Vigna nepalensis
2323141GA522029.771.00INTRON(|||None|Vigan.09G021100.01), UPSTREAM(|2701||None|Vigan.09G021000.01)Vigna nepalensis
2323281AG592404.771.00INTRON(|||None|Vigan.09G021100.01), UPSTREAM(|2841||None|Vigan.09G021000.01)Vigna nepalensis
2323739GA592604.771.00INTRON(|||None|Vigan.09G021100.01), UPSTREAM(|3299||None|Vigan.09G021000.01)Vigna nepalensis
2324191GA532169.771.00NON_SYNONYMOUS_CODING(MISSENSE|Gca/Aca|A216T|None|Vigan.09G021100.01), UPSTREAM(|3751||None|Vigan.09G021000.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
2322274GGTCGCGAAGGCC512546.731.00DOWNSTREAM(|4332||None|Vigan.09G020900.01), UPSTREAM(|1835||None|Vigan.09G021000.01), UTR_5_PRIME(|40||None|Vigan.09G021100.01)Vigna nepalensis
2322491GTG421880.731.00DOWNSTREAM(|4549||None|Vigan.09G020900.01), INTRON(|||None|Vigan.09G021100.01), UPSTREAM(|2052||None|Vigan.09G021000.01)Vigna nepalensis
2323731TCT562518.731.00INTRON(|||None|Vigan.09G021100.01), UPSTREAM(|3292||None|Vigan.09G021000.01)Vigna nepalensis