GBrowse Details

Vigan.09G016500.01

Basic Information:
Name: Vigan.09G016500.01
Multiple alignment
Variant Information
Position: Chr09:1820350..1822749 (+ strand)
Length: 2400
Functional Information:
Description: Similar to Nucleoside diphosphate kinase. [T2DPE5, Phaseolus vulgaris]
GO: Biological Process: nucleoside diphosphate phosphorylation (GO:0006165)
Biological Process: GTP biosynthetic process (GO:0006183)
Biological Process: UTP biosynthetic process (GO:0006228)
Biological Process: CTP biosynthetic process (GO:0006241)
Molecular Function: nucleoside diphosphate kinase activity (GO:0004550)
Molecular Function: ATP binding (GO:0005524)
InterPro: Nucleoside diphosphate kinase (IPR001564)
Nucleoside diphosphate kinase, active site (IPR023005)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:295.07,385.26,320.71,150.24,482.61,1294.15,457.06,216.32
Arabidopsis thaliana homolog: AT4G09320.1
Automatic updates:
Name: NM_001248469 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max nucleoside diphosphate kinase (LOC547870), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249763 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max nucleoside diphosphate kinase (LOC547709), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:1820350..1820594 (+ strand)
Length: 245
Type: five_prime_UTR
Position: Chr09:1820595..1820648 (+ strand)
Length: 54
Type: CDS
Position: Chr09:1821195..1821243 (+ strand)
Length: 49
Type: CDS
Position: Chr09:1821482..1821713 (+ strand)
Length: 232
Type: CDS
Position: Chr09:1822307..1822421 (+ strand)
Length: 115
Type: CDS
Position: Chr09:1822422..1822749 (+ strand)
Length: 328
Type: three_prime_UTR

>Vigan.09G016500.01 class=Sequence position=Chr09:1820350..1822749 (+ strand)
TCCTTTCTAA AAGAGAGAAT TAGAATATTT TTAGGTAAGA GAAGAAAAGG AAAAACAGTG AAATGAAAAT GATTCCAAAG
GCCAAATGCA GAATATTCGT TCGTGAAAAT TAGGGTTAGG GTTGGAGTCC TCATCAGCAC CGTATATAAA TACCCTTTTC
TCTCCGACAT CCTATCGTAT ATCTCACGCT CTCTCTTGCT CACTCACTAC AGAAAACACC ATAATCAATC GTCTAAAAGA
GAGAGATGGC CGAGCAAACC TTCATCATGA TCAAGCCTGA TGGCGTTCAG AGAGGCCTTG TGAGTTCCAT TCTCTCTTAA
CAATTTTTCT TTTTAGTTTT TTTGATTCCT TTTTTATTCG TTAAATTTCA AGATGCATTT GTGAATGAAT TTCGTGAAAA
TTTTGGATGC ATGTGCTTGT TTGTGGAATT TCTAAGCGTT TATTTTTTTA TTTTTTATTT TTTTAAATTT TACTTGTTCA
TTTGAGCTGG GTTTGGGAAA TTTTGTGTTT TGAAAACTTG GGTTGGCTAT TCATGACTTT TCAGGAAAGG TCGACGACTG
TGTTAGTGAT TTGTTTTTCA GTTATGCGAA GTTTAGAGAA AGTGGGTTTG ATGTTTATGA CTTTTCAGAG AATGAGTTGA
TAACCTTGTT AAGGATTTGT TTCTGTGTCT TGGGAAATTG GAGGGTTTAG AAGAATTGTT TGCTTTATAT GGATTTCCTT
AAAATGGGAC GATGGTTGTT TTAGCAATGA TTTTTTGTGT CGGTAATTCG TTTTTAAACG TTTATGTTCT GAATTTGAAG
GATCATGCAT ATGATTTATT TGACTGATAA GTGATTCTGT TTCAGGTTGG TGAGATCATT GCCAGATTTG AGAAGAAAGG
TTTCTACTTG AAAGGTAAAT TTTTGTTAAC TGCTCAATAG TATACTGAAT TTTTGTTGTG ATTTAAGATC AGAACCTATT
GTTTTGTTTC TGATCTAGAT TAAAGCTAAA GTTCATGTAT TTTGTGAATT TTTATCTGCT TGGACCTCAT ATTCGAACAC
CAAGATCTTG TTCTTAGTAT GAGTTATGAT CAAGTTTATT AGTTTTGAAA TTGTTATTAA CAAACGGTTG TTTTAATGTG
ATTTGGTATC AGGTTTGAAA CTTATTAGTG TGGAGCGTGC TTTTGCTGAA AAGCACTATG CTGATTTATC TGCCAAGCCT
TTCTTCAGTG GATTGGTGGA TTACATTATC TCTGGCCCTG TTGTTGCCAT GATTTGGGAG GGTAAAAATG TTGTGGTTAC
TGGCCGAAAG ATTATTGGGG CCACTAACCC AGCTCAATCT GAGCCTGGAA CTATCCGTGG TGACTATGCT ATTGACATTG
GAAGGTATAA ATTTGTTTTC TTCACAATTT AGTTCTTTTT TCATGCTGCA ACCAAATGTG TTTCCATTGT TCATGTTTCT
AATTTAGTTA TGTTGATATT AGGTTATCTT TTTGTTGTTT GATATTCAAT TTTTTCTTGT GTGTTTTAGA GATGTTGGTG
TCCAGAGAAG CCTTGGTTTT AGAGACAAAA AGTGCCCTCA AATTTATTTA TTTTTCTTTT AATGTGAATG TTGCAATGTG
TTCATAACAT CTTCAATTAT CAAGGTAGAT GATAAGACAT GAAAAGAATA AAAATGAAGG GAGGGGAACC CAATAAATCC
ATGTTCTGTA TATGTATGTC ATTGTTTTTA TCAAAATAAA AATTGTTGGT ATTTTAGTCA ATGTTTCTCA ACATGGCTCT
TTTCTTTCTG TAGTTTATGT ACGTATCTAC ATTTTATTAA TTTTTTGATC AATTTGAAGT AAATTTTTGA CCTTTAGAAA
TGGGTTGTGA TTTCCAATGA ATTTCAGTGA ATGGTGTTTC TCTTTTTTAT TAATTAATTG CATTGGTTAA TTTGAGGGAA
GTTTGGTACT TTTTCTGATG AAGTTGTTCT TGTATAGGAA TGTTATCCAT GGAAGTGATT CAGTTGAGAG TGCTCGCAAG
GAAATTGCAT TGTGGTTCCC TGATGGCTCT GTTAACTGGC AAAGCTCCCA ACACTCTTGG ATCTATGAGT AAACCATATG
CTTCAAGTTG ATCTTGAAGT TGCTTGCCCC AGGATGATCC AGATTATCTA ATCTACATGT TCTGTTTCGG TCCATTTCTG
GGCTTTTGTT AGAGTTTGGT ACCTTGGTTT TGTATCTCAA GTCTCTGCTT ATGCTATGTC TGTTGAAACA TGCTCACAGT
CTGATAAATC AAAATTTCAA ACTAGTTTTG CTTTTGCTTA TCGTTTGTAT GTTTTTGCTT GAGATGATGC AATGCTGTTT
AGTTTGAATC TTCTATGCAC GCGTTATCTC ATTCAAATTT AGTTTAAATA ATTTGCTTGG AATGGTAATT TAAAGCTTGG


>Vigan.09G016500.01
TCCTTTCTAA AAGAGAGAAT TAGAATATTT TTAGGTAAGA GAAGAAAAGG AAAAACAGTG AAATGAAAAT GATTCCAAAG
GCCAAATGCA GAATATTCGT TCGTGAAAAT TAGGGTTAGG GTTGGAGTCC TCATCAGCAC CGTATATAAA TACCCTTTTC
TCTCCGACAT CCTATCGTAT ATCTCACGCT CTCTCTTGCT CACTCACTAC AGAAAACACC ATAATCAATC GTCTAAAAGA
GAGAGATGGC CGAGCAAACC TTCATCATGA TCAAGCCTGA TGGCGTTCAG AGAGGCCTTG TTGGTGAGAT CATTGCCAGA
TTTGAGAAGA AAGGTTTCTA CTTGAAAGGT TTGAAACTTA TTAGTGTGGA GCGTGCTTTT GCTGAAAAGC ACTATGCTGA
TTTATCTGCC AAGCCTTTCT TCAGTGGATT GGTGGATTAC ATTATCTCTG GCCCTGTTGT TGCCATGATT TGGGAGGGTA
AAAATGTTGT GGTTACTGGC CGAAAGATTA TTGGGGCCAC TAACCCAGCT CAATCTGAGC CTGGAACTAT CCGTGGTGAC
TATGCTATTG ACATTGGAAG GAATGTTATC CATGGAAGTG ATTCAGTTGA GAGTGCTCGC AAGGAAATTG CATTGTGGTT
CCCTGATGGC TCTGTTAACT GGCAAAGCTC CCAACACTCT TGGATCTATG AGTAAACCAT ATGCTTCAAG TTGATCTTGA
AGTTGCTTGC CCCAGGATGA TCCAGATTAT CTAATCTACA TGTTCTGTTT CGGTCCATTT CTGGGCTTTT GTTAGAGTTT
GGTACCTTGG TTTTGTATCT CAAGTCTCTG CTTATGCTAT GTCTGTTGAA ACATGCTCAC AGTCTGATAA ATCAAAATTT
CAAACTAGTT TTGCTTTTGC TTATCGTTTG TATGTTTTTG CTTGAGATGA TGCAATGCTG TTTAGTTTGA ATCTTCTATG
CACGCGTTAT CTCATTCAAA TTTAGTTTAA ATAATTTGCT TGGAATGGTA ATTTAAAGCT TGG

>Vigan.09G016500.01
ATGGCCGAGC AAACCTTCAT CATGATCAAG CCTGATGGCG TTCAGAGAGG CCTTGTTGGT GAGATCATTG CCAGATTTGA
GAAGAAAGGT TTCTACTTGA AAGGTTTGAA ACTTATTAGT GTGGAGCGTG CTTTTGCTGA AAAGCACTAT GCTGATTTAT
CTGCCAAGCC TTTCTTCAGT GGATTGGTGG ATTACATTAT CTCTGGCCCT GTTGTTGCCA TGATTTGGGA GGGTAAAAAT
GTTGTGGTTA CTGGCCGAAA GATTATTGGG GCCACTAACC CAGCTCAATC TGAGCCTGGA ACTATCCGTG GTGACTATGC
TATTGACATT GGAAGGAATG TTATCCATGG AAGTGATTCA GTTGAGAGTG CTCGCAAGGA AATTGCATTG TGGTTCCCTG
ATGGCTCTGT TAACTGGCAA AGCTCCCAAC ACTCTTGGAT CTATGAGTAA 

>Vigan.09G016500.01
MAEQTFIMIK PDGVQRGLVG EIIARFEKKG FYLKGLKLIS VERAFAEKHY ADLSAKPFFS GLVDYIISGP VVAMIWEGKN
VVVTGRKIIG ATNPAQSEPG TIRGDYAIDI GRNVIHGSDS VESARKEIAL WFPDGSVNWQ SSQHSWIYE*