GBrowse Details

Vigan.08G196200.01

Basic Information:
Name: Vigan.08G196200.01
Multiple alignment
Variant Information
Position: Chr08:17462041..17464821 (+ strand)
Length: 2781
Functional Information:
Description: Similar to uncharacterized LOC101220175. [XP_004163139.1, Cucumis sativus]
InterPro: Domain of unknown function DUF4033 (IPR025114)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.71,2.20,8.11,38.03,3.00,13.31,7.96,7.81
Arabidopsis thaliana homolog: AT4G01995.1
Automatic updates:
Name: NM_001255779 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100788939 (LOC100788939), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:17462041..17462526 (+ strand)
Length: 486
Type: five_prime_UTR
Position: Chr08:17462527..17462640 (+ strand)
Length: 114
Type: CDS
Position: Chr08:17462729..17462824 (+ strand)
Length: 96
Type: CDS
Position: Chr08:17462907..17463011 (+ strand)
Length: 105
Type: CDS
Position: Chr08:17463713..17463812 (+ strand)
Length: 100
Type: CDS
Position: Chr08:17463933..17464024 (+ strand)
Length: 92
Type: CDS
Position: Chr08:17464128..17464208 (+ strand)
Length: 81
Type: CDS
Position: Chr08:17464331..17464399 (+ strand)
Length: 69
Type: CDS
Position: Chr08:17464472..17464603 (+ strand)
Length: 132
Type: CDS
Position: Chr08:17464604..17464821 (+ strand)
Length: 218
Type: three_prime_UTR

>Vigan.08G196200.01 class=Sequence position=Chr08:17462041..17464821 (+ strand)
CTTCAACATC AATATTACAA CAACAAAAAA TTATAAATTG ATATTTGATA CGTCGAGTGC TGGAATCTGC GATACCTTCG
GAGCTGCTCC ACGCATATTT CGAGTTCTGC ATTTTTTATG GCTTTGCATT GCATTATGTA GTTGTCCAAA GTTTCCGACA
CGCTACCTAC AGTTACGTCC AAGGCCGATA ACATTCGATA GAGAAATACT TTTCACTGGT CTGTCAGCCA CCGAACAAAT
TCGCCGGAGG AGCCATACTC CACCAGGAAT CAGATGGGCG TGATTCATCA CCGTCGATTG GATCGTCTCA CAGTCGGATC
GGGTGCTCTG TCTCTTATTG ATTCCTTAAA AGGGTTTCGT TAGAGTTTAT CAAAACGCGC CACGAGGCGT CGTTTTGATT
ATGAGTTGAA AAAACCGGTA ACCGGTAGTC TTTTTTGAGT TTTTTTAACT GAAGTGATTA TGCGGTTTAG TTACGGTTAG
AGAGAAATGA AGGCGCTAGG CATTGTCGTT GGTGCTGCCC CATTGCCCGT GCTGTGTTCG CGTGCTCGGA ACCATCGTTT
TCGCGTTTCC TTTTCTTCTC CTTCGTCAGG TTCCAAAGCG GTGCGTATCT TCTACATTTG TTTTTCATAT TCGTGCTACA
AAATTCGCTT TGGCCAATGC ACGATTCCCA TATTCCTGGA TTGATCAGGT GGAACAAGTG GGAATTGCAG CTGCGAAACC
TGAATACAAG CCTGGGGTGT TTGATGACAT GTTTCTCAAT TTGTTCCGCA ACAAATTGGT ACAGGTAAAG AAAACCTTGT
AGAGTGCTCT TCTCATACGA TGGTTAATTT ATTGTAGTAG CTGAGTGGTT GTGAATAATG TAACAGGAAG TTGGATGGGA
CTCGAAGGAA CCTGGATATG ATGGACTAAT TGAAGTTGCG CATCGTCTAA TGATGAAGGG CACTTCCAAT TCTACTACCG
TGGAAGCAGC GGTATTTCAA TTTGTTTCTC TCTCTCAATT ACCCCTTTTC TGAAACGTTC TTATATGCTA TATCACTTTT
CGTAAACTGT TTGGCCCCTT AGAACTGTAA TTTTATTATT ATTTGGCTCC TTTAAGATGA GAAAGTGTAT AACATTAGAT
AGCCAATTTA ATTTGTTTAA GCGTCTCGAA AGGAGAGCTG TTTATGGAGG TCTTAAACTT AACAAGTTTT TGTGCAGTTT
TACAATTCAG GCAACTGACA ATTGACGTGA CAATTCTTAT ATAAGAAATC AAGAATTGTT GTTTATAAGC AATTTTCTTA
TCAGAGTTCT TAACATTTTT TAGATAATTG CAGAACGTGT TTGAGAATTT ACTTAAATTT CACGTGCCAC TGTAGGACTC
ACACCGAAAA GTGAGTTAAG TTATTCCATT GTGGTTGCAC TGTCGGAGAT GTTACAACAG ATATTGATTG ATAAAATCGT
TTGTAGTGAA GTAGAAAACA GTAAAACTTT TCGGCTCAAA TAAAACCTAA AAGGCTTATT CGGTAAAAAT GAAAAATTGT
TTTGAGTGTG ATTTTATTTG AGATAATCTT GTATTAAATT AAAAGTTTAT TACAAATTGA GCTCATCTTG AGTCTATATG
GTATGTTACG AATTTTTAAT GGTCATGTTG TCCGAAAGTA AGTTCGCTAC CTGTTGTGAC AACTTGTGTC AGGTACGAAT
ATTGAGGTCT CTGTTCCCTC CATATCTTTT GGAGCTCTAT CAAATGCTCA TAGCTCCCAT AGGAGGAGGC AAAATTGCGG
CTATGATGGT TGGTGAGTCT GATGAGATAT ATTTCATTTT TCAATTCTTT TAGATGAATC CCGAATCTTT ATCCTGCCTC
ATGTTCCCCT AAGAAATTTG GTTAGATATC CTAAAACGTT TTGGTTTTGA AGCAAGGGTT ACTGTATTGA CTTGCCAATG
GCTAATGGGC CCTTGCAAAG TGAATTCTGT TGATCTAACA GATGGAACCT CATGCAGTAG TGGGGTGAGC ACTTGTACTT
TTCAATGTGT TTGATCATTT TTAAGTGTTG GTAAAATAAT ACCAAAAATC TGTAATATTC AAAGCAGTGT ATTTGTAAAT
CTTGTAGGTG TATGTGGAAA GATGCAGGTA TCTGGAGGAA AGCAAGTGTG TTGGTATTTG TACCAACACC TGTAAGTTTC
CGACACAGGT TAGTGATCTT TAACACACCT GCTTATTTTT ATTTTATGTT ATAAACAGAT GTAAGCGTGT TATGCATGCT
TCGAAGTTTT TGCTTTCTCT AGAGGACTGT ATTGACTCTT TTCTATGTAG ACCTTCTTCA AGGATCATAT GGGGGTTCCA
TTACTTATGG AGCCTAACTT TGGCGATTAC AGCTGTCAGG TAATATTAAG TAATCTTTAT TGAAAACCAA CTTTGTACTT
GTCATTACTC TCTCGTCTTT TAAAATTGCA GTTCAAATTC GGAGTTCTTC CCCCACAAGA TGATACCATC CTGAAGGAGC
CATGCTTGGA AGCCTGTCCA AACGCTTCCC GACGACGCAT GGTAGCCAAC AATGTAGATG TAACTACGTG CCCAAAGGCA
TGAATTCATT TTTCTGAGAC TTGGGGTTTT CACCTTTATG TTCACTGTCC AAAGCCTCAT GTACATTCTT GAAGAAGGAA
ATACAGCGAG AACCCATGAA ATTAGTAATA CAACTTATCC TTTTCCAACT AGATTATATG GAGTGCTGAT ATTTTGTACT
TGAATACATT GATATTTAAT CTCCTGGATT TAGACATTTT ACGATAATGA TATAATACAA A

>Vigan.08G196200.01
CTTCAACATC AATATTACAA CAACAAAAAA TTATAAATTG ATATTTGATA CGTCGAGTGC TGGAATCTGC GATACCTTCG
GAGCTGCTCC ACGCATATTT CGAGTTCTGC ATTTTTTATG GCTTTGCATT GCATTATGTA GTTGTCCAAA GTTTCCGACA
CGCTACCTAC AGTTACGTCC AAGGCCGATA ACATTCGATA GAGAAATACT TTTCACTGGT CTGTCAGCCA CCGAACAAAT
TCGCCGGAGG AGCCATACTC CACCAGGAAT CAGATGGGCG TGATTCATCA CCGTCGATTG GATCGTCTCA CAGTCGGATC
GGGTGCTCTG TCTCTTATTG ATTCCTTAAA AGGGTTTCGT TAGAGTTTAT CAAAACGCGC CACGAGGCGT CGTTTTGATT
ATGAGTTGAA AAAACCGGTA ACCGGTAGTC TTTTTTGAGT TTTTTTAACT GAAGTGATTA TGCGGTTTAG TTACGGTTAG
AGAGAAATGA AGGCGCTAGG CATTGTCGTT GGTGCTGCCC CATTGCCCGT GCTGTGTTCG CGTGCTCGGA ACCATCGTTT
TCGCGTTTCC TTTTCTTCTC CTTCGTCAGG TTCCAAAGCG GTGGAACAAG TGGGAATTGC AGCTGCGAAA CCTGAATACA
AGCCTGGGGT GTTTGATGAC ATGTTTCTCA ATTTGTTCCG CAACAAATTG GTACAGGAAG TTGGATGGGA CTCGAAGGAA
CCTGGATATG ATGGACTAAT TGAAGTTGCG CATCGTCTAA TGATGAAGGG CACTTCCAAT TCTACTACCG TGGAAGCAGC
GGTACGAATA TTGAGGTCTC TGTTCCCTCC ATATCTTTTG GAGCTCTATC AAATGCTCAT AGCTCCCATA GGAGGAGGCA
AAATTGCGGC TATGATGGTT GCAAGGGTTA CTGTATTGAC TTGCCAATGG CTAATGGGCC CTTGCAAAGT GAATTCTGTT
GATCTAACAG ATGGAACCTC ATGCAGTAGT GGGGTGTATG TGGAAAGATG CAGGTATCTG GAGGAAAGCA AGTGTGTTGG
TATTTGTACC AACACCTGTA AGTTTCCGAC ACAGACCTTC TTCAAGGATC ATATGGGGGT TCCATTACTT ATGGAGCCTA
ACTTTGGCGA TTACAGCTGT CAGTTCAAAT TCGGAGTTCT TCCCCCACAA GATGATACCA TCCTGAAGGA GCCATGCTTG
GAAGCCTGTC CAAACGCTTC CCGACGACGC ATGGTAGCCA ACAATGTAGA TGTAACTACG TGCCCAAAGG CATGAATTCA
TTTTTCTGAG ACTTGGGGTT TTCACCTTTA TGTTCACTGT CCAAAGCCTC ATGTACATTC TTGAAGAAGG AAATACAGCG
AGAACCCATG AAATTAGTAA TACAACTTAT CCTTTTCCAA CTAGATTATA TGGAGTGCTG ATATTTTGTA CTTGAATACA
TTGATATTTA ATCTCCTGGA TTTAGACATT TTACGATAAT GATATAATAC AAA

>Vigan.08G196200.01
ATGAAGGCGC TAGGCATTGT CGTTGGTGCT GCCCCATTGC CCGTGCTGTG TTCGCGTGCT CGGAACCATC GTTTTCGCGT
TTCCTTTTCT TCTCCTTCGT CAGGTTCCAA AGCGGTGGAA CAAGTGGGAA TTGCAGCTGC GAAACCTGAA TACAAGCCTG
GGGTGTTTGA TGACATGTTT CTCAATTTGT TCCGCAACAA ATTGGTACAG GAAGTTGGAT GGGACTCGAA GGAACCTGGA
TATGATGGAC TAATTGAAGT TGCGCATCGT CTAATGATGA AGGGCACTTC CAATTCTACT ACCGTGGAAG CAGCGGTACG
AATATTGAGG TCTCTGTTCC CTCCATATCT TTTGGAGCTC TATCAAATGC TCATAGCTCC CATAGGAGGA GGCAAAATTG
CGGCTATGAT GGTTGCAAGG GTTACTGTAT TGACTTGCCA ATGGCTAATG GGCCCTTGCA AAGTGAATTC TGTTGATCTA
ACAGATGGAA CCTCATGCAG TAGTGGGGTG TATGTGGAAA GATGCAGGTA TCTGGAGGAA AGCAAGTGTG TTGGTATTTG
TACCAACACC TGTAAGTTTC CGACACAGAC CTTCTTCAAG GATCATATGG GGGTTCCATT ACTTATGGAG CCTAACTTTG
GCGATTACAG CTGTCAGTTC AAATTCGGAG TTCTTCCCCC ACAAGATGAT ACCATCCTGA AGGAGCCATG CTTGGAAGCC
TGTCCAAACG CTTCCCGACG ACGCATGGTA GCCAACAATG TAGATGTAAC TACGTGCCCA AAGGCATGA

>Vigan.08G196200.01
MKALGIVVGA APLPVLCSRA RNHRFRVSFS SPSSGSKAVE QVGIAAAKPE YKPGVFDDMF LNLFRNKLVQ EVGWDSKEPG
YDGLIEVAHR LMMKGTSNST TVEAAVRILR SLFPPYLLEL YQMLIAPIGG GKIAAMMVAR VTVLTCQWLM GPCKVNSVDL
TDGTSCSSGV YVERCRYLEE SKCVGICTNT CKFPTQTFFK DHMGVPLLME PNFGDYSCQF KFGVLPPQDD TILKEPCLEA
CPNASRRRMV ANNVDVTTCP KA*