GBrowse Details

Vigan.08G157100.01

Basic Information:
Name: Vigan.08G157100.01
Multiple alignment
Variant Information
Position: Chr08:13973309..13976035 (- strand)
Length: 2727
Functional Information:
Description: Similar to Ammonium transporter. [G7I667, Medicago truncatula]
GO: Cellular Component: exosome (RNase complex) (GO:0000178)
Molecular Function: RNA binding (GO:0003723)
InterPro: Nucleic acid-binding, OB-fold (IPR012340)
Exosome complex component CSL4 (IPR019495)
Exosome complex component, N-terminal domain (IPR025721)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:27.08,37.64,12.60,14.38,24.43,17.70,18.30,15.60
Arabidopsis thaliana homolog: AT5G38890.1
Automatic updates:
Name: BT093063 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-16M6 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255945 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max exosome complex component CSL4-like (LOC100796154), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:13973309..13973839 (- strand)
Length: 531
Type: three_prime_UTR
Position: Chr08:13973840..13973931 (- strand)
Length: 92
Type: CDS
Position: Chr08:13974864..13974945 (- strand)
Length: 82
Type: CDS
Position: Chr08:13975058..13975142 (- strand)
Length: 85
Type: CDS
Position: Chr08:13975382..13975470 (- strand)
Length: 89
Type: CDS
Position: Chr08:13975561..13975635 (- strand)
Length: 75
Type: CDS
Position: Chr08:13975781..13975951 (- strand)
Length: 171
Type: CDS
Position: Chr08:13975952..13976035 (- strand)
Length: 84
Type: five_prime_UTR

>Vigan.08G157100.01 class=Sequence position=Chr08:13973309..13976035 (- strand)
TTATTTTTGT TAGAGGGCCG GTTCAAGAAG CGGTGAATTT GTAGCGGCTA GGCCCAAAAC TAAGTGGAAG GGTTGGGAGC
CGCGATGGAA GAAGAGAAAG AAGCACCGAT GGTAACACCG GGAGAAGTGT TGGGAAGAAG CAGCGATGTC AAAGCTGGGA
GAGGAGCATA CGCAGCGCCT CACAACAACA CCGTTTACGC CTCCCTAACC GGCTTCCACC GTACCATTCC TCCGCCGCCG
GACTCTCCTG ACAAGGTAGG GTTTCGTTTT CCATTGCTCA TTCCACGTGA TAATCAATCC ACCAACAACA CATATCTTCT
GTTTTTGTTA GTTTAATTTG ACGTTGAGCT TAAATTATAG TGTCGTACTG TTTCTGATTG TGATTATTTG TAACATGCAG
AGGCCGACTG TTGAAGTAAC TGGTCACAAG GCGCATGGAC CTGTTCCACA ACCTGGATCT GTTGTCATTG TGCGGGTATA
CATATCTATG GCTAAGGCTA TGTATCGTCT AATATACTTT TCATCACGCT CTCTGTTTTC AACTGCGTCT CTTTTGCTTT
GATAGGTCAC CAAAGTAATG GCGCGGTCCG CTTCTGCTGA TATTATGTGT GTTGGATCTA AGTGTGTTCG AGAAAAATTT
ACCGGCATTA TCAGGTATGC TATTCTTACA CCATCAAGTT ATCTTTTATA GCTTTAGAGA CAGTGACTTT AGCACTTTCA
GAAAAAAAGG AAGAAAAGGA TTAGAGGAAT TGTAGTCATC GATTGTAGAT ATCGTATGCT TAGAGTTTCT TCGTCTTTCG
GTTGAACTTA CATGTATTAT TATCTTTATA CCATGAATTT CATTTTGTTT GACTTTGGGG ATTGTGATAA GATGAGAGTT
GTGTTTAAAA CAGACAGCAA GATGTTAGAG CTACTGAAAT TGATAAAGTA GACATGCACC TGTCTTTTCA TCCCGGTGAT
ATTGTTAAAG CTCTTGTGGT ATTATTACTT TCTTTTAAGA GTTTTGATAA GTTCATTTCA ATTTTTCCTT AATGTTTTTA
AATTTGTTTG TTGCTACTTC AATAGCACCT TAATAACATG TTTTTGTTAG CTTTCTCTTG GAGATGCACG GGCCTACTTT
CTGTCTACTG CAAAGAATGA ACTTGGTGTT GTTTCTGCTG AAAGCATTGC TGGTGAGATT TGGTTCATAT TTAGGACTTT
TGTGACTGCT TGCTTATTTA GTTTGTTGTG CATTACTTAA GCCCGGTTTA TTGTGTCGCA CATATCTGTT GTTTGCCTTT
ATATGTCTAT TTAGGGACTT TAGTTTTTCT TCTGTAAGTT TTTCCTTAGA AAGGGGGTGC AATAATAACA TTGAAACTGC
ATTTGGGTTT GACGGAAGCT CGTCTAGGTC TGATACTTTC TACTTTTACA ATTTCTGGCT CATTGACTAC TGTGGAATAT
TATCTATTAT CTATTATCTA TGAGGATAGG TCAAGTATTG CTGAAGTCCA AGGGAATATA TTCATATTTA AATTTTATTA
GAATAATATG ATTCTTTGAA TATTCCCTAC AATTACATCA ATTTGTCAGT TAGTGTCAAC CAGTTAAATA CAGCAAAAAT
TATCATTTAA GTATGTGGGA GTAGTTTAAT GATGTGGGTA GACTTGAACC TATTATGGCT GACTTGTGAT GATTTTAGCT
GGAATCTAAA TTATCTATGA ATAAATGGAC ACTACTCGAG ATGATATTAA AAATAAAATG TTAGATTCTA CTTCAACTTT
ATTTTGGTGA ACACAGCTTG AAGTTTAGCT TTTAATTCAT TTTTGTATAA ATTGTTTTAT CATTTTTTAC GTGCCTATTT
CTGGTTCATC TTATTTTTAG CAAGCACAGG AGTAAAATCT AATAATTACA TTGTAAGTTG TGCACATGCA TTGGTTGGAC
ATCATCTATC AGGTAGGGAT TAAATCAATG CCTGCCAAAT TGAAATAGAT TATTTCGTTT AAGCCTATGA TTTAATGTGA
CTGTGCATTG TGGAATGTTG TTTTACATAT CAATTTGTCT TTTCCCAGAG AATACTTGGT TGAATCACTT GTGCCTCGAT
TTGTTGTACA TTTTTTCTGT TTAGGTGCAA CCATGGTTCC AGTAAGTTGG ACTGAGATGC AGTGCCCTGT AACTGGACAA
ATTGAGCAAA GAAAGGTTGC AAAGGCTGCA AGCTGACTAG AACACTTCAT CAAGCAGGAA TTTGTTCTCT GTTTTGTAGA
AATGTACTAA CATGCATTGG TGTTAGGGTG AAAAATTATA TATACGTGAA CAGTTTTATT TTTAGACATA CAGGAATGCA
AGCTTGTAGT TTACTTTGCA AGTTGGTCTA CTTCTAAAAT AGCGAAAACG CGAGATTTTC ATTCACTCGT GTTGTGAGCT
GGACTTTGTT TCATTGTAAG ACATACTTTA ATTTTCAAAC TGGGAGGGAA CTGGAGTCAC ATTAGATTAG TTAGACTAGT
ACTTAAATTA CAGTTTTTTA GTTAAATGTT GTTGTGTTGC ATATGGGCTT CTTTAAGTGT CAAGAAATCG GGCCTTGTTT
GTTGGATTGC TGCTACTTCT TGTACATTGT CCTCTTTTTT CCCTATCTTT TGCAAGTAAT GTATGATCTA GTCTTCCACC
GTAAACCATT TCCCTTCTCC CTATCCCATG TCTGTAGGTC TATCAGGACA TTGTTTGAAA GAATAATAGG ATCATATTTT
TCTAGCA

>Vigan.08G157100.01
TTATTTTTGT TAGAGGGCCG GTTCAAGAAG CGGTGAATTT GTAGCGGCTA GGCCCAAAAC TAAGTGGAAG GGTTGGGAGC
CGCGATGGAA GAAGAGAAAG AAGCACCGAT GGTAACACCG GGAGAAGTGT TGGGAAGAAG CAGCGATGTC AAAGCTGGGA
GAGGAGCATA CGCAGCGCCT CACAACAACA CCGTTTACGC CTCCCTAACC GGCTTCCACC GTACCATTCC TCCGCCGCCG
GACTCTCCTG ACAAGAGGCC GACTGTTGAA GTAACTGGTC ACAAGGCGCA TGGACCTGTT CCACAACCTG GATCTGTTGT
CATTGTGCGG GTCACCAAAG TAATGGCGCG GTCCGCTTCT GCTGATATTA TGTGTGTTGG ATCTAAGTGT GTTCGAGAAA
AATTTACCGG CATTATCAGA CAGCAAGATG TTAGAGCTAC TGAAATTGAT AAAGTAGACA TGCACCTGTC TTTTCATCCC
GGTGATATTG TTAAAGCTCT TGTGCTTTCT CTTGGAGATG CACGGGCCTA CTTTCTGTCT ACTGCAAAGA ATGAACTTGG
TGTTGTTTCT GCTGAAAGCA TTGCTGGTGC AACCATGGTT CCAGTAAGTT GGACTGAGAT GCAGTGCCCT GTAACTGGAC
AAATTGAGCA AAGAAAGGTT GCAAAGGCTG CAAGCTGACT AGAACACTTC ATCAAGCAGG AATTTGTTCT CTGTTTTGTA
GAAATGTACT AACATGCATT GGTGTTAGGG TGAAAAATTA TATATACGTG AACAGTTTTA TTTTTAGACA TACAGGAATG
CAAGCTTGTA GTTTACTTTG CAAGTTGGTC TACTTCTAAA ATAGCGAAAA CGCGAGATTT TCATTCACTC GTGTTGTGAG
CTGGACTTTG TTTCATTGTA AGACATACTT TAATTTTCAA ACTGGGAGGG AACTGGAGTC ACATTAGATT AGTTAGACTA
GTACTTAAAT TACAGTTTTT TAGTTAAATG TTGTTGTGTT GCATATGGGC TTCTTTAAGT GTCAAGAAAT CGGGCCTTGT
TTGTTGGATT GCTGCTACTT CTTGTACATT GTCCTCTTTT TTCCCTATCT TTTGCAAGTA ATGTATGATC TAGTCTTCCA
CCGTAAACCA TTTCCCTTCT CCCTATCCCA TGTCTGTAGG TCTATCAGGA CATTGTTTGA AAGAATAATA GGATCATATT
TTTCTAGCA

>Vigan.08G157100.01
ATGGAAGAAG AGAAAGAAGC ACCGATGGTA ACACCGGGAG AAGTGTTGGG AAGAAGCAGC GATGTCAAAG CTGGGAGAGG
AGCATACGCA GCGCCTCACA ACAACACCGT TTACGCCTCC CTAACCGGCT TCCACCGTAC CATTCCTCCG CCGCCGGACT
CTCCTGACAA GAGGCCGACT GTTGAAGTAA CTGGTCACAA GGCGCATGGA CCTGTTCCAC AACCTGGATC TGTTGTCATT
GTGCGGGTCA CCAAAGTAAT GGCGCGGTCC GCTTCTGCTG ATATTATGTG TGTTGGATCT AAGTGTGTTC GAGAAAAATT
TACCGGCATT ATCAGACAGC AAGATGTTAG AGCTACTGAA ATTGATAAAG TAGACATGCA CCTGTCTTTT CATCCCGGTG
ATATTGTTAA AGCTCTTGTG CTTTCTCTTG GAGATGCACG GGCCTACTTT CTGTCTACTG CAAAGAATGA ACTTGGTGTT
GTTTCTGCTG AAAGCATTGC TGGTGCAACC ATGGTTCCAG TAAGTTGGAC TGAGATGCAG TGCCCTGTAA CTGGACAAAT
TGAGCAAAGA AAGGTTGCAA AGGCTGCAAG CTGA

>Vigan.08G157100.01
MEEEKEAPMV TPGEVLGRSS DVKAGRGAYA APHNNTVYAS LTGFHRTIPP PPDSPDKRPT VEVTGHKAHG PVPQPGSVVI
VRVTKVMARS ASADIMCVGS KCVREKFTGI IRQQDVRATE IDKVDMHLSF HPGDIVKALV LSLGDARAYF LSTAKNELGV
VSAESIAGAT MVPVSWTEMQ CPVTGQIEQR KVAKAAS*