VIGGS:Variant information

Chr08:13973309 - 13976035

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
13973375	G	A	66	2616.77	1.00	UPSTREAM(\|1138\|\|None\|Vigan.08G157000.01), UTR_3_PRIME(\|465\|\|None\|Vigan.08G157100.01)	Vigna nepalensis
13973509	C	T	53	2114.77	1.00	UPSTREAM(\|1272\|\|None\|Vigan.08G157000.01), UTR_3_PRIME(\|331\|\|None\|Vigan.08G157100.01)	Vigna nepalensis
13973663	T	C	52	2313.77	1.00	UPSTREAM(\|1426\|\|None\|Vigan.08G157000.01), UTR_3_PRIME(\|177\|\|None\|Vigan.08G157100.01)	Vigna nepalensis
13973672	C	T	59	2605.77	1.00	UPSTREAM(\|1435\|\|None\|Vigan.08G157000.01), UTR_3_PRIME(\|168\|\|None\|Vigan.08G157100.01)	Vigna nepalensis
13973833	G	A	61	2332.77	1.00	UPSTREAM(\|1596\|\|None\|Vigan.08G157000.01), UTR_3_PRIME(\|7\|\|None\|Vigan.08G157100.01)	Vigna nepalensis
13973990	G	A	61	2515.77	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|1753\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13974255	T	A	51	2034.77	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|2018\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13974267	C	T	50	1985.77	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|2030\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13974413	T	A	62	2738.77	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|2176\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13974481	T	C	50	2044.77	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|2244\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13974617	G	C	62	2428.77	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|2380\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13974654	C	G	55	2264.77	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|2417\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13974805	G	A	56	2250.77	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|2568\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13974836	A	C	66	2920.77	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|2599\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13974843	T	A	68	2985.77	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|2606\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13975095	A	T	64	2396.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|cTg/cAg\|L128Q\|None\|Vigan.08G157100.01), UPSTREAM(\|2858\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13975303	C	G	37	1431.77	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|3066\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13975315	C	T	39	1665.77	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|3078\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13975541	T	G	56	2221.77	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|3304\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13975723	A	G	50	1851.77	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|3486\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13975929	G	A	43	1889.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|cCg/cTg\|P8L\|None\|Vigan.08G157100.01), UPSTREAM(\|3692\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13975930	G	C	42	1889.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Ccg/Gcg\|P8A\|None\|Vigan.08G157100.01), UPSTREAM(\|3693\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13975985	C	T	31	1193.77	1.00	UPSTREAM(\|3748\|\|None\|Vigan.08G157000.01), UTR_5_PRIME(\|34\|\|None\|Vigan.08G157100.01)	Vigna nepalensis
13976027	C	T	38	1691.77	1.00	UPSTREAM(\|3790\|\|None\|Vigan.08G157000.01), UTR_5_PRIME(\|76\|\|None\|Vigan.08G157100.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
13973327	CTAT	C	58	2547.73	1.00	UPSTREAM(\|1091\|\|None\|Vigan.08G157000.01), UTR_3_PRIME(\|510\|\|None\|Vigan.08G157100.01)	Vigna nepalensis
13974051	GGCTT	G	64	2801.73	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|1815\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13974056	AAACGAAATAATCTATTTCAATTTGGCAGGCATTGATTTAATCCCTACCTGATAGATGATGT	A	64	2798.73	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|1820\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13974427	TA	T	60	2619.73	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|2191\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13974840	T	TC	64	3032.73	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|2604\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13974956	C	CAT	55	2488.73	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|2720\|\|None\|Vigan.08G157000.01)	Vigna nepalensis
13975307	C	CT	34	1537.73	1.00	INTRON(\|\|\|None\|Vigan.08G157100.01), UPSTREAM(\|3071\|\|None\|Vigan.08G157000.01)	Vigna nepalensis