GBrowse Details

Vigan.08G146000.01

Basic Information:
Name: Vigan.08G146000.01
Multiple alignment
Variant Information
Position: Chr08:12988898..12991297 (+ strand)
Length: 2400
Functional Information:
Description: Similar to Uncharacterized protein. [Q39890, Glycine max]
GO: Molecular Function: calcium ion binding (GO:0005509)
InterPro: EF-hand domain (IPR002048)
EF-hand domain pair (IPR011992)
EF-Hand 1, calcium-binding site (IPR018247)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.08,0.06,5.59,7.37,11.07,6.63,25.55,10.13
Arabidopsis thaliana homolog: AT3G22930.1
Automatic updates:
Name: NM_001249241 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max EF hand calcium-binding family protein (LOC100500308), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250973 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max calmodulin (SCAM-4), mRNA.
PubMed ID: 24254124 NCBI(pubmed)
19667066 NCBI(pubmed)
18347016 NCBI(pubmed)
17485478 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:12988898..12989387 (+ strand)
Length: 490
Type: five_prime_UTR
Position: Chr08:12989388..12989469 (+ strand)
Length: 82
Type: CDS
Position: Chr08:12989613..12989770 (+ strand)
Length: 158
Type: CDS
Position: Chr08:12989914..12989994 (+ strand)
Length: 81
Type: CDS
Position: Chr08:12990675..12990812 (+ strand)
Length: 138
Type: CDS
Position: Chr08:12990813..12991297 (+ strand)
Length: 485
Type: three_prime_UTR

>Vigan.08G146000.01 class=Sequence position=Chr08:12988898..12991297 (+ strand)
TGGAAATTGG AAATTGGAAA TTGATGAGGA CGCAGACTCT ACACTCTTCC CCATACTCCA TACTCTCTAC CCTTTCAACT
TTCAATTAAG CTCTTTTCTT TTGTCCCCTA AACACCAAAC CCTTCCAGCT GTCAATATTT TCACTGCATT ATATTAATCA
AATAAATATC ATTACTTATT ATAAAATCAT TCACTGCATT TAAATCATCC TGCCCCACCA CCTCCACCAC CCCATTTATG
TACTAACAAT TACTCTCTCA TTCTTCTTTC CACCTTAATG CCACAAGTAT AACAACAAAA TGCAGCCATT AAAACTTATT
TTGACTTGGT AAATTCAAAT TTTAAACCAA ATCTTCCAAG ACTGGCTACC ATCACTCAAC TTCTACATAT ACCCCAGCTA
AGATTGAGCT ATACTCAACA ATACAACTCT CTCTCTTCCC CTTCTCTCTA TCTCTCTTTC TCTTTTTCTT GTTTGAAAAA
CAAATACACC ATGACTATGA CAGATGTCTT GAGTGAAGAA CAGATTGTTG ATTTTAAGGA GGCTTTTGGG TTGTTTGATA
AAGATGGAGA TGGTGAGCAA AATTTCTCCT TTTTTGGTTG TCTCTATAAT TTTCATAAAA TGGTATCTAT TATTTTATTC
CCTTGAATTC ATCTTTAGAT TGATAGAATT CTTGTCAGTG TCTTATGTTG TTGTGATCAA TTGTGTCCAT CTTAGGCTGC
ATTACTGTGG AAGAACTGGC CACTGTCATT CGGTCATTGG ATCAGAACCC CACAGAAGAA GAGCTCCAAG ATATGATAAG
TGAGGTCGAT GCAGATGGCA ATGGAACCAT TGAATTTGAC GAGTTTTTGA GCTTGATGGC CAAGAAAGTG AAAGTAAATT
GATTTCTTTT TGTTCCATTC ATTTCAACAA GTCCTATTCG GTTGATATTT GATTTTTGTG TGGCCAAAGC TTCATCTCCT
TTTTCTTTGT ACAATAATCA AAGACTAAGT TGTGAGCTGT GTTCTTTCTC ACTTAGGACA CTGATGCAGA AGAAGAGCTC
AAAGAGGCTT TCAAGGTTTT TGACAAAGAT CAAAATGGCT ATATATCAGC TAGTGAGGTA TTTATTTATT TTTCTGTTGT
ATTGGTTTTC TTTCTTTGAT GACAAGGCCA TTGGAAAATC TCCATTATCA TCCACATCAT AGATTTCTGA AAATTTCGAT
AAAGTTTTCT GCTGAGCTGA GCTGAACAAT GTAGGTGGAC CAATATATAA GTTGCAAATT TAGTTTACAG CTCTTTTCCT
TGAAAGAGTT AAAGCTCTTG ACATTTTTCT TTTTACCTTA ATAATTATAG AGAGTTTTCA ACTTTTTTAT TCCATCTTTT
AAATATACAA GTCTAAATTT TAATAATGAA AAAGCTCGCT ATTTTCAATG AAAGTTTTTG ATATTCCACA TTTAAAATAA
TATAATGTTA GTATTATCTA GACTCAAGAG ACATGGAAAA CTTTGTAATT TATATATATA TATATATATA TATATATATA
TATATATATA TATATATATA TATATATATA TATATATAGG TAACATCTAT AACAACTAGG ACAGTAGACC GTACTTCCGC
ATGCAATGAA TATCAATTGC TTGATTAAAA AATGCATTGG GTTTGACATT TGAGTGTTGT AGAGAATCTT TTTTCTTTTG
TTTTCTCTCA CTCTAAGTAT AGATAAGTTA TACACACATG TAGATACTAC TGTATGATAA TGGTGAAAAC ATTTATATCT
GTTTCTGGGT TGTGCAGTTG AGACACGTAA TGATCAACCT AGGAGAAAAA CTGACTGATG AGGAAGTGGA GCAGATGATT
AAAGAAGCAG ATTTGGACGG TGATGGCCAA GTTAACTATG ATGAATTTGT CAAGATGATG ATGACAGTTA GATGAAGCAC
TCACCTAATT GAATTGGATA AATTGTTATT ATTCGAATTT CATTGGCTTC CAATCTTCCT CCCAGGAAAT AATGTGTGGT
TATTATTGTT TCTTTGTTGT ATTGTATTGT ACTTAGCAAT GACCGAGTAG TAAAATGGCT AGTCAACCCC CCAGTGGATT
TGATCCATTC CAACTCAAAA TTAAATTAAT ATTCTTGTAA TTTTGGTTCA ATATTTTCTG TGCTCCCAGG GTAAGAAAGC
CTTAATTGGT TCATATTTAC CATTAGATAT GTATGACTTT TACCAAGTGA CATAGGTCTC AGATTATATC AATTGGTAGT
TTGTTGTATC ATGGAGTTTG AAATTTTCCT TCCTTCTGTA GCATGGCAGA AATGATCTGA AACATGTGAC TTGGAAAATG
GACCTCCACA TATATTAATG CTACATTAAA TTTATAACAA AGAAATTAAG GTTTGATTAC TTGGAGGAAA CTTATACATT

>Vigan.08G146000.01
TGGAAATTGG AAATTGGAAA TTGATGAGGA CGCAGACTCT ACACTCTTCC CCATACTCCA TACTCTCTAC CCTTTCAACT
TTCAATTAAG CTCTTTTCTT TTGTCCCCTA AACACCAAAC CCTTCCAGCT GTCAATATTT TCACTGCATT ATATTAATCA
AATAAATATC ATTACTTATT ATAAAATCAT TCACTGCATT TAAATCATCC TGCCCCACCA CCTCCACCAC CCCATTTATG
TACTAACAAT TACTCTCTCA TTCTTCTTTC CACCTTAATG CCACAAGTAT AACAACAAAA TGCAGCCATT AAAACTTATT
TTGACTTGGT AAATTCAAAT TTTAAACCAA ATCTTCCAAG ACTGGCTACC ATCACTCAAC TTCTACATAT ACCCCAGCTA
AGATTGAGCT ATACTCAACA ATACAACTCT CTCTCTTCCC CTTCTCTCTA TCTCTCTTTC TCTTTTTCTT GTTTGAAAAA
CAAATACACC ATGACTATGA CAGATGTCTT GAGTGAAGAA CAGATTGTTG ATTTTAAGGA GGCTTTTGGG TTGTTTGATA
AAGATGGAGA TGGCTGCATT ACTGTGGAAG AACTGGCCAC TGTCATTCGG TCATTGGATC AGAACCCCAC AGAAGAAGAG
CTCCAAGATA TGATAAGTGA GGTCGATGCA GATGGCAATG GAACCATTGA ATTTGACGAG TTTTTGAGCT TGATGGCCAA
GAAAGTGAAA GACACTGATG CAGAAGAAGA GCTCAAAGAG GCTTTCAAGG TTTTTGACAA AGATCAAAAT GGCTATATAT
CAGCTAGTGA GTTGAGACAC GTAATGATCA ACCTAGGAGA AAAACTGACT GATGAGGAAG TGGAGCAGAT GATTAAAGAA
GCAGATTTGG ACGGTGATGG CCAAGTTAAC TATGATGAAT TTGTCAAGAT GATGATGACA GTTAGATGAA GCACTCACCT
AATTGAATTG GATAAATTGT TATTATTCGA ATTTCATTGG CTTCCAATCT TCCTCCCAGG AAATAATGTG TGGTTATTAT
TGTTTCTTTG TTGTATTGTA TTGTACTTAG CAATGACCGA GTAGTAAAAT GGCTAGTCAA CCCCCCAGTG GATTTGATCC
ATTCCAACTC AAAATTAAAT TAATATTCTT GTAATTTTGG TTCAATATTT TCTGTGCTCC CAGGGTAAGA AAGCCTTAAT
TGGTTCATAT TTACCATTAG ATATGTATGA CTTTTACCAA GTGACATAGG TCTCAGATTA TATCAATTGG TAGTTTGTTG
TATCATGGAG TTTGAAATTT TCCTTCCTTC TGTAGCATGG CAGAAATGAT CTGAAACATG TGACTTGGAA AATGGACCTC
CACATATATT AATGCTACAT TAAATTTATA ACAAAGAAAT TAAGGTTTGA TTACTTGGAG GAAACTTATA CATT

>Vigan.08G146000.01
ATGACTATGA CAGATGTCTT GAGTGAAGAA CAGATTGTTG ATTTTAAGGA GGCTTTTGGG TTGTTTGATA AAGATGGAGA
TGGCTGCATT ACTGTGGAAG AACTGGCCAC TGTCATTCGG TCATTGGATC AGAACCCCAC AGAAGAAGAG CTCCAAGATA
TGATAAGTGA GGTCGATGCA GATGGCAATG GAACCATTGA ATTTGACGAG TTTTTGAGCT TGATGGCCAA GAAAGTGAAA
GACACTGATG CAGAAGAAGA GCTCAAAGAG GCTTTCAAGG TTTTTGACAA AGATCAAAAT GGCTATATAT CAGCTAGTGA
GTTGAGACAC GTAATGATCA ACCTAGGAGA AAAACTGACT GATGAGGAAG TGGAGCAGAT GATTAAAGAA GCAGATTTGG
ACGGTGATGG CCAAGTTAAC TATGATGAAT TTGTCAAGAT GATGATGACA GTTAGATGA

>Vigan.08G146000.01
MTMTDVLSEE QIVDFKEAFG LFDKDGDGCI TVEELATVIR SLDQNPTEEE LQDMISEVDA DGNGTIEFDE FLSLMAKKVK
DTDAEEELKE AFKVFDKDQN GYISASELRH VMINLGEKLT DEEVEQMIKE ADLDGDGQVN YDEFVKMMMT VR*