Variant information

Chr08:12988898 - 12991297

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
12989919TC391589.771.00SYNONYMOUS_CODING(SILENT|acT/acC|T82|None|Vigan.08G146000.01)Vigna nepalensis
12990079GT522091.771.00INTRON(|||None|Vigan.08G146000.01)Vigna nepalensis
12990285GT662960.771.00INTRON(|||None|Vigan.08G146000.01)Vigna nepalensis
12990286AT652960.771.00INTRON(|||None|Vigan.08G146000.01)Vigna nepalensis
12990461CA361582.771.00INTRON(|||None|Vigan.08G146000.01)Vigna nepalensis
12990942GA662637.771.00UTR_3_PRIME(|130||None|Vigan.08G146000.01)Vigna nepalensis
12990971GA542204.771.00UTR_3_PRIME(|159||None|Vigan.08G146000.01)Vigna nepalensis
12991120AT652709.771.00UTR_3_PRIME(|308||None|Vigan.08G146000.01)Vigna nepalensis
12991225AG683036.771.00UTR_3_PRIME(|413||None|Vigan.08G146000.01)Vigna nepalensis
12991227AG663036.771.00UTR_3_PRIME(|415||None|Vigan.08G146000.01)Vigna nepalensis
12991238CT622513.771.00UTR_3_PRIME(|426||None|Vigan.08G146000.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
12988890GTGGAAATG482092.731.00INTERGENIC(||||), UPSTREAM(|7||None|Vigan.08G146000.01)Vigna nepalensis
12990913GGTTGTA632815.731.00UTR_3_PRIME(|102||None|Vigan.08G146000.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
12990387(TA)34(TA)1524688.370.83INTRON(|||None|Vigan.08G146000.01)Vigna nepalensis