GBrowse Details

Vigan.08G140200.01

Basic Information:
Name: Vigan.08G140200.01
Multiple alignment
Variant Information
Position: Chr08:12386760..12390760 (- strand)
Length: 4001
Functional Information:
Description: Similar to peroxisomal membrane protein PMP22-like. [XP_004495354.1, Cicer arietinum]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Mpv17/PMP22 (IPR007248)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.03,6.66,17.51,3.39,90.72,17.65,32.87,13.98
Arabidopsis thaliana homolog: AT4G14305.1
Automatic updates:
Name: NM_001250736 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527292 (LOC100527292), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:12386760..12386992 (- strand)
Length: 233
Type: three_prime_UTR
Position: Chr08:12386993..12387044 (- strand)
Length: 52
Type: CDS
Position: Chr08:12388021..12388106 (- strand)
Length: 86
Type: CDS
Position: Chr08:12388188..12388258 (- strand)
Length: 71
Type: CDS
Position: Chr08:12389370..12389445 (- strand)
Length: 76
Type: CDS
Position: Chr08:12389601..12389702 (- strand)
Length: 102
Type: CDS
Position: Chr08:12389984..12390082 (- strand)
Length: 99
Type: CDS
Position: Chr08:12390244..12390315 (- strand)
Length: 72
Type: CDS
Position: Chr08:12390316..12390760 (- strand)
Length: 445
Type: five_prime_UTR

>Vigan.08G140200.01 class=Sequence position=Chr08:12386760..12390760 (- strand)
ACGGGATCAA TTGGATCCAA TCAAGACAGG CTTCCACGCG GGCAAAATTA CCATAAACAT GGCTAAATGC CTCTCCAATG
GAACCAAGAG ATTCCTTAAT CTTTCGTTCT TTTCTGCTAC TATTTTGAAA TGTTTAGGGT AGGTATTAAT TAATTAATTA
ATGGCTAATT AATATCTAAG AATTTCTGGG AAGGGATCAA ATTCGATTTT GGTCTAGTTT TGTCATGAAT ACGTTAACAC
CCTTCTGCAA CGCCATGCTT CGTGTGAATC GTGTGATTCA TGTGTAGTAC CTCCATTTGC TTTTGCCACC TAACCTCTGA
TACTTTCATT ACCCTTTCTA TATTTTCTAT GTTTCTGGTC ACTCTCCATC TTCTTCCATC TTTCAAAGGA TACGAGTAAC
TATCACAAAG TAAAAATACA CAAGATCCGG GCTTGATCAA CCACCATGTC TGACAAAGTC AACCATGTTT TCAAGAAATA
TCTTCACCAG CTTCAGCACC ATCCCCTCAG AACCAAGGTT TCAAATCTCT CTTTTCACAC TCTTCTCGTT TTTCTCATTT
TCATTTAAAA GAGAATAAAC AATTGGGTTT GATTCAAAAA AATTGTTTTC TCATTTATTT TTCCTTATGG GTTTTAAGAG
ACTAATGGGG TTGCTAAAAA AACCTTGTCG GTTGTTAGGC AATTACCGCA GCAGTTTTGG CTGGTTTTAG TGATGCAGTT
GCACAGAAGA TATCTGGGGC CAAGAAACTT CAGTTGAGAA GGCTGCTTCT TTTCATGGTA TGTCCATTTT CCTTAACCAT
GTTTCTCCTA AATCACTGTT TCAATTTCAT TTTCAATTTG TACAGTATCT GTGTCTGTAT CAGTTTTTCT GAAAATCGTT
CGTATTTTCC ATGGAGCTAA CTAGAATATC GTCTTTACCA TCAACCTTTT CAGAACTTTC ATTCAGTGAT CATATAATAA
AAATAAAACA CCCTGTGTCA CCGAAGATGA GGCAGAAATT AAAGTTTGTA GAGAAATTTT TAAGGACTGA GCATATCTGA
AATCAATTTT TTTTGCAGCT CTATGGTTTT GCCTACTCGG GACCCTTTGG ACATTTTCTC CACAAATTGA TGGATAAAAT
TTTTAAGGGG CAGAAAGGCA ATGACACCGT TGCTAAGAAG GTATTGTGAG CCCTGTGTTG TTATCCCTTG GTCTCTTCTC
TGATCCTTTC ACTTGTAGGG ACATTATTTT GTATTGTGTT AGGTTCTATA ATGTTTATAG TCCTGCTACA AGGCTTTAAC
TAATTCTCTA GTGAATGAAA TTCCTCTATG AATAGGTGAT CCTTGAACAG ATAACCAGTT CCCCATGGAA CAACTTCTTT
TTCATGATGT ACTATGGCTT GGTTATAGAA GGTATGCTCA TTGATAAAAT ACGTTCTCAT TTTTTTGTTA TACCTCAGTT
TACACAAATT AATTTTGAAA CATTTACATT AATCCTTAAT GCCAACTTTT GCTGTTAATG TCTTGTCTGC TCTGCATCTC
ACCTCCCCAC TCAAAACAGA AACCATTCAA TTGTTTCGCT CTTCCTTAAA TACCTGCTTT CTTGTGTTTA TCATGATTAT
TATGCCAATG CAAGAAATTG GTCGCTTGTC GTTGCTTAAT TCTTAACTTT GATCCTGTCA CTGATGTAGT GCTGAAGTTA
GTATTTGTAT GTCAATATGG TGTATTGCAC TGGAATGTGG TACTTTAAAA TGAGTCTCCT CACTGAATTT CAACACATGG
AAAATGCTAA ATGTGGTCTG CAACAGTTGT TTAGTCATTT AATTATTTAC ATGATAAATG ATGTCGGGTG TTTTTCTTGA
CAAGAATGTT AGTAATTTCT TTTGATGCAG TTTTAGCATT TCAAAGGAAA CAAATTCAGT GCAAAACTTT TCAGTTTTAT
CAAACATCCC TTGACTAATA TGAAATCGGT GAACTATAAT TAGAAAAATA AGTAAATAAA TAAAATAAGG TCTAACAGTG
TTTTTGGTGT TCCTACCTTT GGAGCATACA AAGGAGTCTA ACAACGAAGT TTTTATTTTC CTAAACTATC CCGTCTATAC
GAATTTTTGT GTTGGATAAC TTGGAGGAGT TCAATATAGG GCTACTTGCA TGTGTCTGAG TTACGATCTT GAACAAGTAC
TTGTTCTCAA CTATGTGAAT CACATAGAAC TCCCACAGAA AAGACTTGAT CAAACCAAGA GGGTGGAGAG TCTGGAAAGT
TGCAATGAAG AAGAAAACAC AAACAAAATT TCAAGATTTA AGAGATTTTA TACATTGAGT GATAGATAAC ATTTAAGCTT
TTCTGAGATA CACCTCATAT TTCTTTGATT TTCTTCATGT ACTAAACCTA AAATGTAGGC AGCTTTTCAG TTATTGTTAA
GTGTTCTAAT ACATTTTGAA GACCTGACTT AAGAATGACA ACCTGTGAAT AAAGTATCCT GACAGATTTA TCTGCATTGC
ATTGTAATTA ACTGGTTTTC AGGAAGACCT TGGAGTACAG TCACAAACAA AGTTAAAAAG GATTATCCTT CTGTTCAATT
GACTGCATGG AAGGTATGGC AATGAAAACA GTCTTCTATT CAGCTCATGG GTTTGAAGAG TTAGTTTTTT TAAGTTATAT
GGTTTTACTT GCAGTTTTGG CCTGTAGTTG GTTGGGTGAA TTACCAGTAT ATGCCTCTGC AGCTCCGTGT TGTATTTCAC
AGCTTTGTTG CTGCTTGCTG GTGAGCTACA TCTTTTAACT TATTATTTAC ACATGGCATC TCTCATTTGT TCTAAAAATT
AATGAATCAG CATCATGAGT TGATTATACT ACGAAAGGTA TGCGTGGCAT TGTAAACTAC AGAAGTTTCC TGTAAAGTGA
TGTGAAATCA ATGAAATTAT ATTTTACTCT TAGAAGCAGG TCTAGTTTTG ACTTTTTAAG GTCATAGGAG AGGGTATATT
TCAAGCGGAC AAAATACCTA TTGTGTTAAT TCTGCCATCA ACCATCATAC TGTGATTTCG AAATTTGCAA AACCTACCAT
CTTAGCTAAA GTCTTATGTC TAATGTACAT ACACGACCTA ATAGATATGC TGAATAAAAT GGCCCAACAA GGTTCATAAT
ACTTCACTAA CCTAACATAG AAAATATTCG AGATATATTT GTTGGTACAA ATATTCATAT ATTAATAGTA TATATAGCAA
AAACGGACAA TACCTTATAT GAGGGTAATT GATCCTAACA ATGTCAGTCG ACAGGATCAG AACATTGACT TTCAATGTGG
GCTGATAACG AGAACAATCA TTCTCTTTAG ACATTGACTA AGGGCTTATG TTTCAATACA TTTAATAGTT TCACATTATT
TAGGAGTTAA AGTCTAAGAA CACATATTCT AAAATGGGCA ATATTTTGGA TAAGAGGTGA TTCACCCTAA CAATGTAATT
CTACAAATTC GAATACCTAG TAAATGAAAC CAAGTATAAT ATATTGTTGC AGTTTGATTC TTTGTGTGTG TTGATTAAAC
TATTTTCTTT CAGATGCCTT GAAACGGACT AAGTTATGTC AGTATGTTAC CAAGTCACTA AGATTTTAGA TTTTAGCACA
AGGTTGAAGT GCATAATAGT TTCTTCCATG CTCTAAGTTT GATAAATCAA TTATTGTCAT ACCTTCCATG AATTTATTGG
CAATTAATGG GCCTCTGGTT GACTTTCTTA CATCAGGGGA ATCTTTCTGA ATCTGAAAGC AAGGTCTGTT GCAATTAAGA
ATACGTAGGG CAAATTTCAG ACTTTTGGGT AATTTTCTGC CTGCTTCCAA TGTAAAGTGG GATGAAAAAT CTACCATGGG
AGCATTCACG GAAGTTTGTT TGCCACATTA GACTATTCTT TTTAATTTCC GCTGGCTGTC ATCACAGTTG AGTTGAGCTT
TCAGTCGCAC TATTGATGAA TGTGACGTTA CTTCTTATCG ACATCAATTA TAATCATAAT ATGATTTTAA AAAACCTTTT
A

>Vigan.08G140200.01
ACGGGATCAA TTGGATCCAA TCAAGACAGG CTTCCACGCG GGCAAAATTA CCATAAACAT GGCTAAATGC CTCTCCAATG
GAACCAAGAG ATTCCTTAAT CTTTCGTTCT TTTCTGCTAC TATTTTGAAA TGTTTAGGGT AGGTATTAAT TAATTAATTA
ATGGCTAATT AATATCTAAG AATTTCTGGG AAGGGATCAA ATTCGATTTT GGTCTAGTTT TGTCATGAAT ACGTTAACAC
CCTTCTGCAA CGCCATGCTT CGTGTGAATC GTGTGATTCA TGTGTAGTAC CTCCATTTGC TTTTGCCACC TAACCTCTGA
TACTTTCATT ACCCTTTCTA TATTTTCTAT GTTTCTGGTC ACTCTCCATC TTCTTCCATC TTTCAAAGGA TACGAGTAAC
TATCACAAAG TAAAAATACA CAAGATCCGG GCTTGATCAA CCACCATGTC TGACAAAGTC AACCATGTTT TCAAGAAATA
TCTTCACCAG CTTCAGCACC ATCCCCTCAG AACCAAGGCA ATTACCGCAG CAGTTTTGGC TGGTTTTAGT GATGCAGTTG
CACAGAAGAT ATCTGGGGCC AAGAAACTTC AGTTGAGAAG GCTGCTTCTT TTCATGCTCT ATGGTTTTGC CTACTCGGGA
CCCTTTGGAC ATTTTCTCCA CAAATTGATG GATAAAATTT TTAAGGGGCA GAAAGGCAAT GACACCGTTG CTAAGAAGGT
GATCCTTGAA CAGATAACCA GTTCCCCATG GAACAACTTC TTTTTCATGA TGTACTATGG CTTGGTTATA GAAGGAAGAC
CTTGGAGTAC AGTCACAAAC AAAGTTAAAA AGGATTATCC TTCTGTTCAA TTGACTGCAT GGAAGTTTTG GCCTGTAGTT
GGTTGGGTGA ATTACCAGTA TATGCCTCTG CAGCTCCGTG TTGTATTTCA CAGCTTTGTT GCTGCTTGCT GGGGAATCTT
TCTGAATCTG AAAGCAAGGT CTGTTGCAAT TAAGAATACG TAGGGCAAAT TTCAGACTTT TGGGTAATTT TCTGCCTGCT
TCCAATGTAA AGTGGGATGA AAAATCTACC ATGGGAGCAT TCACGGAAGT TTGTTTGCCA CATTAGACTA TTCTTTTTAA
TTTCCGCTGG CTGTCATCAC AGTTGAGTTG AGCTTTCAGT CGCACTATTG ATGAATGTGA CGTTACTTCT TATCGACATC
AATTATAATC ATAATATGAT TTTAAAAAAC CTTTTA

>Vigan.08G140200.01
ATGTCTGACA AAGTCAACCA TGTTTTCAAG AAATATCTTC ACCAGCTTCA GCACCATCCC CTCAGAACCA AGGCAATTAC
CGCAGCAGTT TTGGCTGGTT TTAGTGATGC AGTTGCACAG AAGATATCTG GGGCCAAGAA ACTTCAGTTG AGAAGGCTGC
TTCTTTTCAT GCTCTATGGT TTTGCCTACT CGGGACCCTT TGGACATTTT CTCCACAAAT TGATGGATAA AATTTTTAAG
GGGCAGAAAG GCAATGACAC CGTTGCTAAG AAGGTGATCC TTGAACAGAT AACCAGTTCC CCATGGAACA ACTTCTTTTT
CATGATGTAC TATGGCTTGG TTATAGAAGG AAGACCTTGG AGTACAGTCA CAAACAAAGT TAAAAAGGAT TATCCTTCTG
TTCAATTGAC TGCATGGAAG TTTTGGCCTG TAGTTGGTTG GGTGAATTAC CAGTATATGC CTCTGCAGCT CCGTGTTGTA
TTTCACAGCT TTGTTGCTGC TTGCTGGGGA ATCTTTCTGA ATCTGAAAGC AAGGTCTGTT GCAATTAAGA ATACGTAG

>Vigan.08G140200.01
MSDKVNHVFK KYLHQLQHHP LRTKAITAAV LAGFSDAVAQ KISGAKKLQL RRLLLFMLYG FAYSGPFGHF LHKLMDKIFK
GQKGNDTVAK KVILEQITSS PWNNFFFMMY YGLVIEGRPW STVTNKVKKD YPSVQLTAWK FWPVVGWVNY QYMPLQLRVV
FHSFVAACWG IFLNLKARSV AIKNT*