GBrowse Details

Vigan.08G082600.01

Basic Information:
Name: Vigan.08G082600.01
Multiple alignment
Variant Information
Position: Chr08:6705519..6709393 (+ strand)
Length: 3875
Functional Information:
Description: Similar to sec-independent protein translocase protein TATB, chloroplastic-like. [XP_003556118.2, Glycine max]
GO: Biological Process: protein secretion (GO:0009306)
Biological Process: protein transport (GO:0015031)
Cellular Component: plasma membrane (GO:0005886)
Cellular Component: membrane (GO:0016020)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: protein transporter activity (GO:0008565)
InterPro: Sec-independent protein translocase protein TatA/B/E (IPR003369)
Twin-arginine translocation protein TatB-like (IPR003998)
Sec-independent protein translocase protein TatA/E (IPR006312)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.31,17.45,16.10,39.08,9.86,15.61,11.76,10.20
Arabidopsis thaliana homolog: AT5G52440.1
Automatic updates:
Name: NM_001254653 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100781301 (LOC100781301), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:6705519..6705698 (+ strand)
Length: 180
Type: five_prime_UTR
Position: Chr08:6705699..6705882 (+ strand)
Length: 184
Type: CDS
Position: Chr08:6705956..6706074 (+ strand)
Length: 119
Type: CDS
Position: Chr08:6707990..6708049 (+ strand)
Length: 60
Type: CDS
Position: Chr08:6708141..6708273 (+ strand)
Length: 133
Type: CDS
Position: Chr08:6708787..6708930 (+ strand)
Length: 144
Type: CDS
Position: Chr08:6709036..6709112 (+ strand)
Length: 77
Type: CDS
Position: Chr08:6709113..6709393 (+ strand)
Length: 281
Type: three_prime_UTR

>Vigan.08G082600.01 class=Sequence position=Chr08:6705519..6709393 (+ strand)
TAAAAATACG ATCAAATTTC GTTAGGAAGA TTTTGGGAAA ATTGGAAAGA AAATCTTACG ATAAGCAATA CTTTTGAGTT
GACCATGAAT TACAGATAGG ATTGTTTGTG AGGGCTGGGC AGAGAGGCAT CCATCGTTCG ACATTCATCA ATTTCTTAAA
ACAAAAACAG TGTCCCAGAA ATGACACAAT CCGTGGCAAT GGCTTCTTCA TCAATGTTGT GTCCGAGTGC TGTGTCGCAT
ACAAAGTTCC GAGCTTTCCA TCTCTCTTCA ATGTTCACTC CACTGGGTCG AGGCCTTTTC TCGCCGTGGA GTGGTTTAAA
GCATTTGGGC ATCTCTGCTA AACCAAAACC TCTTCTTCAC ATAGGTAACA AAACAATTAT ATCACGTGTG AGGATTTTGT
TTTTTCATGT TGCTGCGCTC ATTATAGTCA TTTGCAGCTA GAAAGGGGTG TAAGGGTATG GTGGTTTACG CTTCTCTCTT
TGGGGTTGGA GCTCCTGAAG CTTTGGTGAT TGGGGTCGTT GCTTTGTTGG TTTTTGGTCC TAAAGGTCTC GCTGAGGTGA
GTTTGATTGA AGGGTATGCA ACTCTTCCTC TGTGTCGTTT TTGTGTTGGA AGATCTTTGA ATGATTTTGC CTATGTAATT
GTTGCTTGGG GTCCTTTGCT GTATGACAAC TTGCGAAAAC TATGCCTATT ATGATTGATT TGAGAATTTT AAATGGCTTT
GCTGTTTTGA ATTTAGTCTG AGAGATGCCA TGGTACCATT AGAAATCTAA GGGTTTTGGC CCTGGACCAT TAGTTGAATG
AGTTTGATTA AACCAAGGGG GAAAGTTTTC AAATAATAGT ACCAAAACCC TTAAATTTCT GAGTATACAA TAAAATTTCT
CATTATTTCC CATTTTTATG AAATTAGTCT TTCTAAATGT TTGAGCAGCT GAGAGGAGGT TGAGGATGAA TTTTAGTAAT
GTGTTGGAGG ATGGATAAAG TACAAGCTGT CAATACCATG TGCTGAAACC TGAAATAGTG AAATTCGATT TCAGTGATGA
AAATGGGGGA AGCAAACGAT GAAGCTTTTG TCTCTATGTA ATGAAGCCTT TGGTGTCTCG AGAAGTAACC AGTGTTCCTA
ACAGTTTAGT GTGTAGATCC CAGAGTGGTT TTATTATCAT AAAACCCACG AAAAATATCC TATCTACTTT GTGAAGGAAA
GGAAAAGGAT ACACATCGGG CTCATCGCTT TACATGAAAT AGACATCGGA AAGTTTACCA ATCCTAAATC GTTCAAACTC
CAAACTGACC AAAATTAACA ATCGGTCAAT TTTGAAAGAA GCTTTTCTTT GGCTTATCAA ATGTCAATAC GTCCAATCAA
CTCAGGCAGA GAAATCCATC ATCTTTCTCA TTGCTTATTA TTATTTCAAA GTTGCATTTA TTACTAGAGA AATAGTATAT
TGATAACATC TATTCAGACA CATTACTTGA TGTTTACTAT TTCTGTGGTT TAAGTGATCA AGAATTAACG CTCCTTTTAA
TTTGGACAAT GTTTTGTCTT AAAAACAATA GAAAAACCTC CAAGAAGCCT GATAATGGCT AGATGCTGAT GGAAATAATC
ACGTGTAAGT CTGTAACATT TATCCAATCT GCTTGAAAGT TAATGTTTTT CATTTTTTAT TTGATTCAAA CTACTTCAGA
CTTTACTTTT CTTTCCGCTA AGAAACAGGG AAAGGGGATG CATGTTTAAA AGCCTGCTCT GGTTTTTTCA ATATTAACTT
GATTCGGTTG AACTGATAGG AGGTTTAGGG CTAAGCTCAA TCTTTGTTGA AAGTAGCTAT AGCACATGTT CTACAATGCA
GATAACCAAA AGGCTTTATT TTTTTCTAAA ATGTAGTTCA GCAAAGTGAA TGTGTGTAAT ATAGCATACA GGAGAGTTGA
AGAGCCATGT TGTTTCATGT TTTGTAATTG GAGGTTAACA TTGGCCATTG CACCAGACCT ATTTGCTTAT AAGGAGCACC
GAGTTTATAA TAATCATGCT CTCTGTCAAC CATCAGTGGT GCCCTTGTTT CTTGAACAAA AATGTCAAGA GTTACACATC
AGCTCAAAGG GGTTTACATA AGTGGAATAA GTAGTTGAGA GATGTATGAC AATACTATTT CAGATTATTT TTTTCCCCAA
GGTTTGAATT AGTTCCTTAA GTCTTTAATG TAAATGTCAA CAAAATTGTG TTTTAACATT ATCTGTGATA GGGTAAGGTT
TTCTCTTGTT TAAAAGAACT GTGGAATTTA CAATGAAACC GTGAAAGGAT AATAGGTTGC TCCCTGCCAC TTAGGTTGCA
AATTTTGTCT ACATTCTCTA ATGGCTATTA TTGAATGAGA TTTAAATCAG ATAGTTGGAG TTCCATCTTT TACTGGAGAT
GCCTTATGGG TAAGGATGGC TATCTTTTCT TTTTCTTAAC TCCCTGAGCT TCAAATGAAT AACAAATGCA GGTTGCTCGA
AATCTGGGAA AAACATTGCG TGCGTTTCAA CCCACCATTA GAGAGCTTCA GGTTGGTGCT AAAAATATTT AATAGTAAAA
TTTTATGCAA TTCCACTAGA TAGTTAGTTT TTTGTTATTG CTTGTCATTT TCCCCCTTTT AGGACGTTTC AAGGGAATTT
AAGACTACGC TTGAACGGGA GATTGGTCTT GATGACAATA TAAGTCCAAC GCAGAACAGA TACAACTCTA ATGCAAGCAA
TACCAGATCA ACATCATCAT CCACAGTTGA CCCTAGTGAG TAATCTAGTA TCATTTTTTT GTTTTTTTAA ATTTATTTGC
TATTGAATTT AGAAGTATAA TCTGGACAAA TGTTTTTATC CTTATACAGT GTGTATGATT GGTCTCCTCA TAGAAGTACC
ATCTTACGCT TGCAAACAAT TAAGTTCACA TTACAACTAC AATGATCTTT ATCAACCATA TCAGTTATTG AGTTGATAAG
AACCAGAAAA TAGAACTGAT ACAAATGCCA AAAAGAAAAA GAAAAGCAAG TAAAAGTAAT TTGGAGAAAT GACTACTATG
TATATTAAGA CAATGCTTTA TGTAAGGGGA CATTTTTTCT TATTTCATAA AGCATTGTCT TAATATACAT AGTAGTCATT
TCTCCAAATT ACTTTTACTT GCTTTTCTTT TTCTTTTTGT AATTATCAGC TGCCAGGTCA GAAAGCTAAG TGGGTTTGGT
GACTATTTGT GCCTATTGTG ATGACATTGG TTTCTCATGA TTTTCCATTT ATATCTCTGA TAATGCAGAC GGAACGCCAG
ACCCTAAGAA TGCATACAGC TCTGAGGAAT ATCTTAAGAT TACAGAGGAA CAGCTGAAGG CATCTGCTGC ACAACAGCAG
GAGCAAACAC CTCCCAAGGA ACGCGAGGAT GAGCCTCAAA TCAAGCCACC TGGTCAGTCT TTTATGTAGC ATTTTTTTTT
TATACTTTTT CTCTCTTTCC ACTCTCTTTT TTCTTTGCCT GATTTTGATA TGATTGACTT ATTCTTGATA TCAACAGCTA
AGGAAACAGC CACTACTGTG CCTCCACCTC CACCGCAGAA GCCAGAAAGT GAGACGTTGC CTCTGGATTC ATAGGGATAT
AGGGTGTAAA GGTAATTAAT TCAATTATCA CTTGTGTCCT GAATAAGGCA CTACTATTCG TATAAGTGAT GGGAAGGGTC
ACGCAATTTT GTTTCCAGGA AGTCATATTA GAATTATGTA ACGGAGAAAA CCATTCACAA GTACTGTGTT TCAGTGTATT
TGTATTGTAG TTAATCACTA ACCATTGCTG GTTATGCGCC ATCTTTCTCT TAAAAGTATG ACAAATATTT CCTTCATGTT
CTTCAAAATG AAATATGATC GAAGTGAAGT TGTTG

>Vigan.08G082600.01
TAAAAATACG ATCAAATTTC GTTAGGAAGA TTTTGGGAAA ATTGGAAAGA AAATCTTACG ATAAGCAATA CTTTTGAGTT
GACCATGAAT TACAGATAGG ATTGTTTGTG AGGGCTGGGC AGAGAGGCAT CCATCGTTCG ACATTCATCA ATTTCTTAAA
ACAAAAACAG TGTCCCAGAA ATGACACAAT CCGTGGCAAT GGCTTCTTCA TCAATGTTGT GTCCGAGTGC TGTGTCGCAT
ACAAAGTTCC GAGCTTTCCA TCTCTCTTCA ATGTTCACTC CACTGGGTCG AGGCCTTTTC TCGCCGTGGA GTGGTTTAAA
GCATTTGGGC ATCTCTGCTA AACCAAAACC TCTTCTTCAC ATAGCTAGAA AGGGGTGTAA GGGTATGGTG GTTTACGCTT
CTCTCTTTGG GGTTGGAGCT CCTGAAGCTT TGGTGATTGG GGTCGTTGCT TTGTTGGTTT TTGGTCCTAA AGGTCTCGCT
GAGGTTGCTC GAAATCTGGG AAAAACATTG CGTGCGTTTC AACCCACCAT TAGAGAGCTT CAGGACGTTT CAAGGGAATT
TAAGACTACG CTTGAACGGG AGATTGGTCT TGATGACAAT ATAAGTCCAA CGCAGAACAG ATACAACTCT AATGCAAGCA
ATACCAGATC AACATCATCA TCCACAGTTG ACCCTAACGG AACGCCAGAC CCTAAGAATG CATACAGCTC TGAGGAATAT
CTTAAGATTA CAGAGGAACA GCTGAAGGCA TCTGCTGCAC AACAGCAGGA GCAAACACCT CCCAAGGAAC GCGAGGATGA
GCCTCAAATC AAGCCACCTG CTAAGGAAAC AGCCACTACT GTGCCTCCAC CTCCACCGCA GAAGCCAGAA AGTGAGACGT
TGCCTCTGGA TTCATAGGGA TATAGGGTGT AAAGGTAATT AATTCAATTA TCACTTGTGT CCTGAATAAG GCACTACTAT
TCGTATAAGT GATGGGAAGG GTCACGCAAT TTTGTTTCCA GGAAGTCATA TTAGAATTAT GTAACGGAGA AAACCATTCA
CAAGTACTGT GTTTCAGTGT ATTTGTATTG TAGTTAATCA CTAACCATTG CTGGTTATGC GCCATCTTTC TCTTAAAAGT
ATGACAAATA TTTCCTTCAT GTTCTTCAAA ATGAAATATG ATCGAAGTGA AGTTGTTG

>Vigan.08G082600.01
ATGACACAAT CCGTGGCAAT GGCTTCTTCA TCAATGTTGT GTCCGAGTGC TGTGTCGCAT ACAAAGTTCC GAGCTTTCCA
TCTCTCTTCA ATGTTCACTC CACTGGGTCG AGGCCTTTTC TCGCCGTGGA GTGGTTTAAA GCATTTGGGC ATCTCTGCTA
AACCAAAACC TCTTCTTCAC ATAGCTAGAA AGGGGTGTAA GGGTATGGTG GTTTACGCTT CTCTCTTTGG GGTTGGAGCT
CCTGAAGCTT TGGTGATTGG GGTCGTTGCT TTGTTGGTTT TTGGTCCTAA AGGTCTCGCT GAGGTTGCTC GAAATCTGGG
AAAAACATTG CGTGCGTTTC AACCCACCAT TAGAGAGCTT CAGGACGTTT CAAGGGAATT TAAGACTACG CTTGAACGGG
AGATTGGTCT TGATGACAAT ATAAGTCCAA CGCAGAACAG ATACAACTCT AATGCAAGCA ATACCAGATC AACATCATCA
TCCACAGTTG ACCCTAACGG AACGCCAGAC CCTAAGAATG CATACAGCTC TGAGGAATAT CTTAAGATTA CAGAGGAACA
GCTGAAGGCA TCTGCTGCAC AACAGCAGGA GCAAACACCT CCCAAGGAAC GCGAGGATGA GCCTCAAATC AAGCCACCTG
CTAAGGAAAC AGCCACTACT GTGCCTCCAC CTCCACCGCA GAAGCCAGAA AGTGAGACGT TGCCTCTGGA TTCATAG

>Vigan.08G082600.01
MTQSVAMASS SMLCPSAVSH TKFRAFHLSS MFTPLGRGLF SPWSGLKHLG ISAKPKPLLH IARKGCKGMV VYASLFGVGA
PEALVIGVVA LLVFGPKGLA EVARNLGKTL RAFQPTIREL QDVSREFKTT LEREIGLDDN ISPTQNRYNS NASNTRSTSS
STVDPNGTPD PKNAYSSEEY LKITEEQLKA SAAQQQEQTP PKEREDEPQI KPPAKETATT VPPPPPQKPE SETLPLDS*