GBrowse Details

Vigan.08G068100.01

Basic Information:
Name: Vigan.08G068100.01
Multiple alignment
Variant Information
Position: Chr08:5342652..5345379 (- strand)
Length: 2728
Functional Information:
Description: Similar to 40S ribosomal protein S3a. [V7BBU7, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S3Ae (IPR001593)
Ribosomal protein S3Ae, conserved site (IPR018281)
40S ribosomal protein S1/3, eukaryotes (IPR027500)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:191.48,352.39,147.35,103.83,242.09,2 65.89,215.80,121.73
Arabidopsis thaliana homolog: AT4G34670.1
Automatic updates:
Name: NM_001252929 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S3a-like (LOC100808747), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254076 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S3a-like (LOC100805519), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254501 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S3a (LOC100813273), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289223 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S3a (LOC100818730), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:5342652..5342800 (- strand)
Length: 149
Type: three_prime_UTR
Position: Chr08:5342801..5342896 (- strand)
Length: 96
Type: CDS
Position: Chr08:5343381..5343581 (- strand)
Length: 201
Type: CDS
Position: Chr08:5343800..5343985 (- strand)
Length: 186
Type: CDS
Position: Chr08:5344080..5344217 (- strand)
Length: 138
Type: CDS
Position: Chr08:5344713..5344818 (- strand)
Length: 106
Type: CDS
Position: Chr08:5344922..5344980 (- strand)
Length: 59
Type: CDS
Position: Chr08:5344981..5345379 (- strand)
Length: 399
Type: five_prime_UTR

>Vigan.08G068100.01 class=Sequence position=Chr08:5342652..5345379 (- strand)
ATTCAATCAA AATTAAATAT TTTTATAGTT TAAAAACTAA AATTACGCAC AAAAAAGAAA GCCAATTAAA AGAGACCAAA
ATTTTAATTT AGGAAAGAAA TAGCAGAATC GATGGCTTGA TGTCTTTTTT TATGCATTGG GTTAGAAAGA AAGTGTTCGG
CTTCCTAAGA TGGGCCTTAT TATCTTGAGA CGAGGTCCAC GATTTAAAAG CCCAGGTGAC ATTGATCTTA AAGAGCCCAA
GCCCATGCAA TCTTGGCATC AGAAAAACCC TAAATTATTC ATAATGAAGA TAAAAGGAGA GAGGTATATA AAAGGTTAGG
GTTTGAGGTT TATTCGGGTG CCATTGTTGC TCTTGTTGTC ATTCGCAGCT GCTGTCACTC ACACCGCACA CAGTGAGCCA
TGGCCGTTGG AAAGAACAAG CGCATCTCCA AAGGGAAGAA GGGTGGCAAG AAGAAGGCGT TAGTATCTTC CATTTCTATC
CTTTGTGGCA TGTTTCTTCT CTTTTTAGTT GTATCAGTTT TTCAATTGAA ATATGGGTTT CGTTTGTATA TGAATTTGCA
GAGCTGATCC CTTTTCCAAG AAGGATTGGT ATGACATTAA GGCTCCCTCT GTTTTCCAAG TAAAAAATGT TGGCAAAACC
CTCGTCAGCC GTACTCAGGG TACCAAGGTA TTGCTTTCGG AATATGTACA AAGAATTGGC ATTTTTACCA TTTTAGCGAA
AATTTGTTGG CTTTGTGTTG TGGATCACTT GTAATAGGTC TTTCATTTTT GAACTTTTCT TATGATATAG CTCGGACATG
AATTGTCATA TTGATAAGAT GGCTGATACA CATGTGTTGC TTTTGACTGG GGATTTTCTT TCTTTGTAAT TCTGGTGCAT
TTCGTCGAAT GACTAGTTCC TATATTTACC GTGTAAACCG GGAGAACTTA AACAGAATGT CAGCTTCCTT TTTTTCTTTC
TTAGATCTCT ATAATATATG GGAAAAATAA ATATAGGTTT AAACTTTGAG GTGTGTGTTT ATTGCATTTT TGGTTCTATT
GGGAAAACAA GGGCCTATGA ATCTTCTAAG GGTTTGCTGT CTATCAATCG TCAGTTGCTT GTCTACACGC GTATTATGGA
CAATAATTTG ATAATGTTTA CCGTGGTTGT TTTAAATTAC AGATTGCCTC TGAAGGACTC AAACATAGAG TCTTTGAGGT
CTCATTAGCT GATCTTCAAG GAGATGAGGA TCATGCATTC AGGAAGATAA GGCTGAGAGC TGAAGATATT CAAGGGAAGA
ATGTCCTGAC GAATTTCTGG GTATGATTGA TGACTGTACC ATTTTTGTTC ATCATACCAT CCTGCGTTGT TTTTTTTTTA
TCAAATATGA ATCCTTTAAT CTTTCATTTT ATAGGGAATG GATTTCACCA CAGACAAACT GAGGTCTTTG GTTCGAAAAT
GGCAAACACT TATTGAAGCC CATGTGGATG TGAAGACAAC TGATAGTTAC ACATTGAGGA TGTTTTGTAT TGGATTCACC
AAGAGAAGAG CTAACCAGGT GAAGAGAACC TGTTATGCCC AATCAAGCCA GATTAGACAG GTATACGCAC CAATATTGTA
ATAAGATTCT ACTGTTGAGC AATATTTTTG TTTTGTTTGT CAATACAAAG TATGTACTCC GCATTCAATA TGGTTTACAG
GACATGTTCT GGTTGCACTT CTCTGTATAC AGTGCATAGT GGTTTTTAAC TGTAGACTTT GTGGTTTTTG CTACGCTATT
GCAGTTTAAT AATTGGTATC GTACTTTTAA CTTTTCAGAT ACGTAGGAAG ATGAGAGAGA TCATGACCAA CCAGGCAACA
TCCTGTGATT TGAAGGAGTT GGTCCGAAAG TTTATTCCTG AGATTATTGG AAAAGAAATT GAGAAGGCAA CGTCTAGCAT
TTATCCGCTG CAGAACGTGT TTGTCCGAAA AGTCAAGATT CTTAAAGCTC CTAAGTTTGA TCTTGGGAAA CTGATGGAGG
TAATTTTTAA AATTTTTTTT TTTCATCTTT CTTCTATACC ATACGTCATG AAAAATATTT CAAAAATTCA TTTACCTGAA
CAAACTTTGA TGTCTACTGT GTGTGCTTGG TTTACCATTA GGAGATAACT TAATGTGTGT GTCTGAAATA ATAGTTGATA
GACGATTTGT ATTGTTAATA AATCTGGCAG TCCTAGTTGA TCATACCAAT GTCCAGGGTT TTTGAATTCT TTTACTGTGA
ATAGATGGAT CAGCTGAACA AATTGAGCAT GTTATCTTTC TTATCTATAA ACTAGTTCAC TTTCTTATAG CCACCAAAAT
AGAAATTTTG TCGTACTTAA ATGTTATTTC TATTATTCCC TTGATTAAAC CTTATGATTT GTTGATCACG GCAATTATCA
TGTCTTGCCA AGAAATAAAG TTTTTACTGG TACATGTTGA TGACACCTTA TAAGCGGATT TATTTTCGGT TTGGCCCTTG
TAGGTTCATG GTGATTACTC AGAAGATGTT GGCACAAAGG TAGACAGACC TGCTGATGAA ACAATTGCAG AGGAACCCAC
CGAAATTGTT GGAGCTTAAT TCAGTGATAC TGCATTCAGC TTGTTGTAGT TTTCTGTTTC CTGATGTTAT CATTGAAAAT
TAAGTTTAAA ACTTCAGTTT AGTGTTTGTG TAAGCCGAGT AAACCAGTTT TGTTTTGACA ATCAGATATT TTTTGCTCGT
AATACATC

>Vigan.08G068100.01
ATTCAATCAA AATTAAATAT TTTTATAGTT TAAAAACTAA AATTACGCAC AAAAAAGAAA GCCAATTAAA AGAGACCAAA
ATTTTAATTT AGGAAAGAAA TAGCAGAATC GATGGCTTGA TGTCTTTTTT TATGCATTGG GTTAGAAAGA AAGTGTTCGG
CTTCCTAAGA TGGGCCTTAT TATCTTGAGA CGAGGTCCAC GATTTAAAAG CCCAGGTGAC ATTGATCTTA AAGAGCCCAA
GCCCATGCAA TCTTGGCATC AGAAAAACCC TAAATTATTC ATAATGAAGA TAAAAGGAGA GAGGTATATA AAAGGTTAGG
GTTTGAGGTT TATTCGGGTG CCATTGTTGC TCTTGTTGTC ATTCGCAGCT GCTGTCACTC ACACCGCACA CAGTGAGCCA
TGGCCGTTGG AAAGAACAAG CGCATCTCCA AAGGGAAGAA GGGTGGCAAG AAGAAGGCAG CTGATCCCTT TTCCAAGAAG
GATTGGTATG ACATTAAGGC TCCCTCTGTT TTCCAAGTAA AAAATGTTGG CAAAACCCTC GTCAGCCGTA CTCAGGGTAC
CAAGATTGCC TCTGAAGGAC TCAAACATAG AGTCTTTGAG GTCTCATTAG CTGATCTTCA AGGAGATGAG GATCATGCAT
TCAGGAAGAT AAGGCTGAGA GCTGAAGATA TTCAAGGGAA GAATGTCCTG ACGAATTTCT GGGGAATGGA TTTCACCACA
GACAAACTGA GGTCTTTGGT TCGAAAATGG CAAACACTTA TTGAAGCCCA TGTGGATGTG AAGACAACTG ATAGTTACAC
ATTGAGGATG TTTTGTATTG GATTCACCAA GAGAAGAGCT AACCAGGTGA AGAGAACCTG TTATGCCCAA TCAAGCCAGA
TTAGACAGAT ACGTAGGAAG ATGAGAGAGA TCATGACCAA CCAGGCAACA TCCTGTGATT TGAAGGAGTT GGTCCGAAAG
TTTATTCCTG AGATTATTGG AAAAGAAATT GAGAAGGCAA CGTCTAGCAT TTATCCGCTG CAGAACGTGT TTGTCCGAAA
AGTCAAGATT CTTAAAGCTC CTAAGTTTGA TCTTGGGAAA CTGATGGAGG TTCATGGTGA TTACTCAGAA GATGTTGGCA
CAAAGGTAGA CAGACCTGCT GATGAAACAA TTGCAGAGGA ACCCACCGAA ATTGTTGGAG CTTAATTCAG TGATACTGCA
TTCAGCTTGT TGTAGTTTTC TGTTTCCTGA TGTTATCATT GAAAATTAAG TTTAAAACTT CAGTTTAGTG TTTGTGTAAG
CCGAGTAAAC CAGTTTTGTT TTGACAATCA GATATTTTTT GCTCGTAATA CATC

>Vigan.08G068100.01
ATGGCCGTTG GAAAGAACAA GCGCATCTCC AAAGGGAAGA AGGGTGGCAA GAAGAAGGCA GCTGATCCCT TTTCCAAGAA
GGATTGGTAT GACATTAAGG CTCCCTCTGT TTTCCAAGTA AAAAATGTTG GCAAAACCCT CGTCAGCCGT ACTCAGGGTA
CCAAGATTGC CTCTGAAGGA CTCAAACATA GAGTCTTTGA GGTCTCATTA GCTGATCTTC AAGGAGATGA GGATCATGCA
TTCAGGAAGA TAAGGCTGAG AGCTGAAGAT ATTCAAGGGA AGAATGTCCT GACGAATTTC TGGGGAATGG ATTTCACCAC
AGACAAACTG AGGTCTTTGG TTCGAAAATG GCAAACACTT ATTGAAGCCC ATGTGGATGT GAAGACAACT GATAGTTACA
CATTGAGGAT GTTTTGTATT GGATTCACCA AGAGAAGAGC TAACCAGGTG AAGAGAACCT GTTATGCCCA ATCAAGCCAG
ATTAGACAGA TACGTAGGAA GATGAGAGAG ATCATGACCA ACCAGGCAAC ATCCTGTGAT TTGAAGGAGT TGGTCCGAAA
GTTTATTCCT GAGATTATTG GAAAAGAAAT TGAGAAGGCA ACGTCTAGCA TTTATCCGCT GCAGAACGTG TTTGTCCGAA
AAGTCAAGAT TCTTAAAGCT CCTAAGTTTG ATCTTGGGAA ACTGATGGAG GTTCATGGTG ATTACTCAGA AGATGTTGGC
ACAAAGGTAG ACAGACCTGC TGATGAAACA ATTGCAGAGG AACCCACCGA AATTGTTGGA GCTTAA

>Vigan.08G068100.01
MAVGKNKRIS KGKKGGKKKA ADPFSKKDWY DIKAPSVFQV KNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDHA
FRKIRLRAED IQGKNVLTNF WGMDFTTDKL RSLVRKWQTL IEAHVDVKTT DSYTLRMFCI GFTKRRANQV KRTCYAQSSQ
IRQIRRKMRE IMTNQATSCD LKELVRKFIP EIIGKEIEKA TSSIYPLQNV FVRKVKILKA PKFDLGKLME VHGDYSEDVG
TKVDRPADET IAEEPTEIVG A*