GBrowse Details

Vigan.08G044900.01

Basic Information:
Name: Vigan.08G044900.01
Multiple alignment
Variant Information
Position: Chr08:3558550..3560556 (+ strand)
Length: 2007
Functional Information:
Description: Similar to cinnamyl alcohol dehydrogenase-like. [XP_006589636.1, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747)
InterPro: Alcohol dehydrogenase superfamily, zinc-type (IPR002085)
Alcohol dehydrogenase, zinc-type, conserved site (IPR002328)
GroES (chaperonin 10)-like (IPR011032)
Alcohol dehydrogenase, C-terminal (IPR013149)
Alcohol dehydrogenase GroES-like (IPR013154)
NAD(P)-binding domain (IPR016040)
Polyketide synthase, enoylreductase (IPR020843)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.45,9.05,69.74,160.87,36.52,112.31,62.71,188.32
Arabidopsis thaliana homolog: AT3G19450.1, AT4G34230.1
Automatic updates:
Name: NM_001419169 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula probable cinnamyl alcohol dehydrogenase (LOC25485411), mRNA.
PubMed ID: 31837401 NCBI(pubmed)
23136381 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:3558550..3558615 (+ strand)
Length: 66
Type: five_prime_UTR
Position: Chr08:3558616..3558848 (+ strand)
Length: 233
Type: CDS
Position: Chr08:3558951..3559064 (+ strand)
Length: 114
Type: CDS
Position: Chr08:3559150..3559377 (+ strand)
Length: 228
Type: CDS
Position: Chr08:3559541..3559980 (+ strand)
Length: 440
Type: CDS
Position: Chr08:3560075..3560277 (+ strand)
Length: 203
Type: CDS
Position: Chr08:3560278..3560556 (+ strand)
Length: 279
Type: three_prime_UTR

>Vigan.08G044900.01 class=Sequence position=Chr08:3558550..3560556 (+ strand)
GAAAGAGTGG ATTTTGATGA AGAAAACGTC AGTTGCTTCA CCTACCGCAT AGTGGTCCCA CAATTCATGG TGCTTGCCGA
GTTGTTGGCT AGGCCAGCTT TATATGCAGA CACATCTTCC CAGAATAACG CACCAACAAA TTCCAATCCC ACTCCTCCAT
TTTTCATCAG TGTTAAAACT CTCTTCAAGA ACAATAATTA TTATAAAAAA ATGGGTAGCC TTGAAGAGGA AAGAACAACT
GTAGGATGGG CAGCAAGAGA CCCTTCTGGG GTTCTCTCCC CATACACCTA CAATCTAAGG TATCTTTAAC TTCAATCTTT
TTTTCCTCTT CCTTCAATAC TTAGTATTTA TAATTTTATC CTTATTGTTG TCATTTTATA TGTTTAAAAC CTTTTTTGCA
GAAACACTGG CCCTGATGAT GTTTACATCA AAGTTCACTA CTGTGGAATT TGCCACTCTG ATCTCCACCA GATTAAAAAC
GATCTTGGCA TGTCCAATTA CCCCATGGTC CCCGGGTACA TGCACTTACT AACTTGCTCG CTAATCATGC TTGTTATTTG
TGGTTTTTTG GTTGTTTACC ATTGATGAAT TTTGCTCCAG ACACGAAGTG ATTGGTGAGG TACTGGAGGT GGGGTCAAAC
GTTAGCAGAT TCGGAGTTGG TGAAGTGGTT GGAGTTGGAC TCCTCGTAGG TTGCTGCAAA AACTGCGGGC CATGCCAGTC
AGACATTGAG CAGTACTGCA GCAAGAAAAT TTGGTCTTAC AATGATGTTT ATGTGGATGG AAAGCCCACT CAGGGTGGCT
TTGCAGAAAC CATGATCGTC GAGCAAAAGT AATTTATTAA CTACTGTTTC AAAAATTAAC CTTTTAAGAG TTCCATCTGC
AATCTTAGTC TAGGGTATAC CCATTTAAAC TTTCATTACA AAAATTAACA TAGTATGTAG AATAATTTAA AAATTGTCGG
TAACATGGTG AAGTTAATTT TTGGGTGTTA GGTTTGTGGT GAAAATTCCA GAGGGTTTGG CGCCAGAGCA AGCTGCACCA
TTGTTGTGTG CTGGTGTGAC TGTGTACAGT CCACTGTCGC ATTTTGGGTT GAAAGAGAGA GGGCTGAGGG GTGGAATATT
GGGGCTTGGA GGAGTGGGAC ACATGGGGGT GAAGATAGCA AAAGCATTCG GTCACCATGT GACTGTGATA AGTTCTTCTG
ACAAGAAGAA ACAGGAGGCA CTTGAACATC TTGGAGCTGA TCAATATCTT GTTAGCTCTG ATGCCACTGC TATGCAGGAA
GCTGCTGATT CACTTGACTA CATCATTGAC ACTGTGCCTG TCGGTCATCC TCTCGAGCCT TATCTCTCCT TGCTCAAACT
TGATGGCAAG TTGATCTTGA TGGGGGTCAT CAACACCCCT CTGCAATTTG TTAGCCCCAT GGTCATGCTA GGTAATCATG
ACACCTCTTT CTTGCTTTTG GGAACTCATT ATTATCACGT TTTATTGATT TTGCAATGTA AATGATGTGA GTTTCTGTCG
TGCAGGGAGG AAATCAATAA CTGGAAGTTT CATTGGAAGC ATGAAGGAGA CAGAGGAGAT GTTGGAGTTC TGGAAAGAGA
AGGGACTGAG CTCTATGATT GAAGTGGTGA ACATGGATTA CATTAACAAG GCTTTTGAAA GGTTGGAGAA GAACGACGTG
AGATACAGGT TTGTTGTGGA TGTTAAAGGG AGCAAACTTG AACAGTAAAA AGATGTTGCT CTGAGCATCT TCAATCATGG
AGGAGAGTCT GTCCGGACAG TTAAAGTTGT GTTTGTTTAT TAAGAAGAGT GCTCTGTTTT CTCTGCTTTA GCTTCACGCC
TTTCATTAAA TATTTTATAT GAAAAATTCT GGTGGGAAGG GTTTTGTTGT GTTAAATATT GATTTGTTGG TTAATGAAAA
AAAAGAGAGA GAAAAAGTGG ATGAGTGGAT TACCAAATTG AGTTGCTTGA CCTTTACCTA ATCTTTGACA AAGAGACATC
ATCTTCT

>Vigan.08G044900.01
GAAAGAGTGG ATTTTGATGA AGAAAACGTC AGTTGCTTCA CCTACCGCAT AGTGGTCCCA CAATTCATGG TGCTTGCCGA
GTTGTTGGCT AGGCCAGCTT TATATGCAGA CACATCTTCC CAGAATAACG CACCAACAAA TTCCAATCCC ACTCCTCCAT
TTTTCATCAG TGTTAAAACT CTCTTCAAGA ACAATAATTA TTATAAAAAA ATGGGTAGCC TTGAAGAGGA AAGAACAACT
GTAGGATGGG CAGCAAGAGA CCCTTCTGGG GTTCTCTCCC CATACACCTA CAATCTAAGA AACACTGGCC CTGATGATGT
TTACATCAAA GTTCACTACT GTGGAATTTG CCACTCTGAT CTCCACCAGA TTAAAAACGA TCTTGGCATG TCCAATTACC
CCATGGTCCC CGGACACGAA GTGATTGGTG AGGTACTGGA GGTGGGGTCA AACGTTAGCA GATTCGGAGT TGGTGAAGTG
GTTGGAGTTG GACTCCTCGT AGGTTGCTGC AAAAACTGCG GGCCATGCCA GTCAGACATT GAGCAGTACT GCAGCAAGAA
AATTTGGTCT TACAATGATG TTTATGTGGA TGGAAAGCCC ACTCAGGGTG GCTTTGCAGA AACCATGATC GTCGAGCAAA
AGTTTGTGGT GAAAATTCCA GAGGGTTTGG CGCCAGAGCA AGCTGCACCA TTGTTGTGTG CTGGTGTGAC TGTGTACAGT
CCACTGTCGC ATTTTGGGTT GAAAGAGAGA GGGCTGAGGG GTGGAATATT GGGGCTTGGA GGAGTGGGAC ACATGGGGGT
GAAGATAGCA AAAGCATTCG GTCACCATGT GACTGTGATA AGTTCTTCTG ACAAGAAGAA ACAGGAGGCA CTTGAACATC
TTGGAGCTGA TCAATATCTT GTTAGCTCTG ATGCCACTGC TATGCAGGAA GCTGCTGATT CACTTGACTA CATCATTGAC
ACTGTGCCTG TCGGTCATCC TCTCGAGCCT TATCTCTCCT TGCTCAAACT TGATGGCAAG TTGATCTTGA TGGGGGTCAT
CAACACCCCT CTGCAATTTG TTAGCCCCAT GGTCATGCTA GGGAGGAAAT CAATAACTGG AAGTTTCATT GGAAGCATGA
AGGAGACAGA GGAGATGTTG GAGTTCTGGA AAGAGAAGGG ACTGAGCTCT ATGATTGAAG TGGTGAACAT GGATTACATT
AACAAGGCTT TTGAAAGGTT GGAGAAGAAC GACGTGAGAT ACAGGTTTGT TGTGGATGTT AAAGGGAGCA AACTTGAACA
GTAAAAAGAT GTTGCTCTGA GCATCTTCAA TCATGGAGGA GAGTCTGTCC GGACAGTTAA AGTTGTGTTT GTTTATTAAG
AAGAGTGCTC TGTTTTCTCT GCTTTAGCTT CACGCCTTTC ATTAAATATT TTATATGAAA AATTCTGGTG GGAAGGGTTT
TGTTGTGTTA AATATTGATT TGTTGGTTAA TGAAAAAAAA GAGAGAGAAA AAGTGGATGA GTGGATTACC AAATTGAGTT
GCTTGACCTT TACCTAATCT TTGACAAAGA GACATCATCT TCT

>Vigan.08G044900.01
ATGGTGCTTG CCGAGTTGTT GGCTAGGCCA GCTTTATATG CAGACACATC TTCCCAGAAT AACGCACCAA CAAATTCCAA
TCCCACTCCT CCATTTTTCA TCAGTGTTAA AACTCTCTTC AAGAACAATA ATTATTATAA AAAAATGGGT AGCCTTGAAG
AGGAAAGAAC AACTGTAGGA TGGGCAGCAA GAGACCCTTC TGGGGTTCTC TCCCCATACA CCTACAATCT AAGAAACACT
GGCCCTGATG ATGTTTACAT CAAAGTTCAC TACTGTGGAA TTTGCCACTC TGATCTCCAC CAGATTAAAA ACGATCTTGG
CATGTCCAAT TACCCCATGG TCCCCGGACA CGAAGTGATT GGTGAGGTAC TGGAGGTGGG GTCAAACGTT AGCAGATTCG
GAGTTGGTGA AGTGGTTGGA GTTGGACTCC TCGTAGGTTG CTGCAAAAAC TGCGGGCCAT GCCAGTCAGA CATTGAGCAG
TACTGCAGCA AGAAAATTTG GTCTTACAAT GATGTTTATG TGGATGGAAA GCCCACTCAG GGTGGCTTTG CAGAAACCAT
GATCGTCGAG CAAAAGTTTG TGGTGAAAAT TCCAGAGGGT TTGGCGCCAG AGCAAGCTGC ACCATTGTTG TGTGCTGGTG
TGACTGTGTA CAGTCCACTG TCGCATTTTG GGTTGAAAGA GAGAGGGCTG AGGGGTGGAA TATTGGGGCT TGGAGGAGTG
GGACACATGG GGGTGAAGAT AGCAAAAGCA TTCGGTCACC ATGTGACTGT GATAAGTTCT TCTGACAAGA AGAAACAGGA
GGCACTTGAA CATCTTGGAG CTGATCAATA TCTTGTTAGC TCTGATGCCA CTGCTATGCA GGAAGCTGCT GATTCACTTG
ACTACATCAT TGACACTGTG CCTGTCGGTC ATCCTCTCGA GCCTTATCTC TCCTTGCTCA AACTTGATGG CAAGTTGATC
TTGATGGGGG TCATCAACAC CCCTCTGCAA TTTGTTAGCC CCATGGTCAT GCTAGGGAGG AAATCAATAA CTGGAAGTTT
CATTGGAAGC ATGAAGGAGA CAGAGGAGAT GTTGGAGTTC TGGAAAGAGA AGGGACTGAG CTCTATGATT GAAGTGGTGA
ACATGGATTA CATTAACAAG GCTTTTGAAA GGTTGGAGAA GAACGACGTG AGATACAGGT TTGTTGTGGA TGTTAAAGGG
AGCAAACTTG AACAGTAA

>Vigan.08G044900.01
MVLAELLARP ALYADTSSQN NAPTNSNPTP PFFISVKTLF KNNNYYKKMG SLEEERTTVG WAARDPSGVL SPYTYNLRNT
GPDDVYIKVH YCGICHSDLH QIKNDLGMSN YPMVPGHEVI GEVLEVGSNV SRFGVGEVVG VGLLVGCCKN CGPCQSDIEQ
YCSKKIWSYN DVYVDGKPTQ GGFAETMIVE QKFVVKIPEG LAPEQAAPLL CAGVTVYSPL SHFGLKERGL RGGILGLGGV
GHMGVKIAKA FGHHVTVISS SDKKKQEALE HLGADQYLVS SDATAMQEAA DSLDYIIDTV PVGHPLEPYL SLLKLDGKLI
LMGVINTPLQ FVSPMVMLGR KSITGSFIGS MKETEEMLEF WKEKGLSSMI EVVNMDYINK AFERLEKNDV RYRFVVDVKG
SKLEQ*