VIGGS:Variant information

Chr08:3558550 - 3560556

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
3558557	T	G	54	2077.77	1.00	UPSTREAM(\|4361\|\|None\|Vigan.08G044800.01), UTR_5_PRIME(\|59\|\|None\|Vigan.08G044900.01)	Vigna nepalensis
3558940	C	A	56	2264.77	1.00	INTRON(\|\|\|None\|Vigan.08G044900.01), UPSTREAM(\|4744\|\|None\|Vigan.08G044800.01)	Vigna nepalensis
3559085	G	A	52	1903.77	1.00	INTRON(\|\|\|None\|Vigan.08G044900.01), UPSTREAM(\|4889\|\|None\|Vigan.08G044800.01)	Vigna nepalensis
3559189	C	T	46	1799.77	1.00	SYNONYMOUS_CODING(SILENT\|aaC/aaT\|N129\|None\|Vigan.08G044900.01), UPSTREAM(\|4993\|\|None\|Vigan.08G044800.01)	Vigna nepalensis
3559871	C	T	56	2220.77	1.00	DOWNSTREAM(\|4960\|\|None\|Vigan.08G045000.01), SYNONYMOUS_CODING(SILENT\|gtC/gtT\|V302\|None\|Vigan.08G044900.01)	Vigna nepalensis
3560008	T	A	54	2157.77	1.00	DOWNSTREAM(\|4823\|\|None\|Vigan.08G045000.01), INTRON(\|\|\|None\|Vigan.08G044900.01)	Vigna nepalensis
3560064	C	G	60	2317.77	1.00	DOWNSTREAM(\|4767\|\|None\|Vigan.08G045000.01), INTRON(\|\|\|None\|Vigan.08G044900.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
3558700	ACTC	A	44	1930.73	1.00	CODON_DELETION(\|actcct/act\|TP29T\|None\|Vigan.08G044900.01), UPSTREAM(\|4505\|\|None\|Vigan.08G044800.01)	Vigna nepalensis
3558873	T	TG	41	1725.73	1.00	INTRON(\|\|\|None\|Vigan.08G044900.01), UPSTREAM(\|4678\|\|None\|Vigan.08G044800.01)	Vigna nepalensis
3560275	T	TA	70	2184.73	1.00	DOWNSTREAM(\|4555\|\|None\|Vigan.08G045000.01), FRAME_SHIFT(\|taa/tAaa\|406?\|None\|Vigan.08G044900.01)	Vigna nepalensis