GBrowse Details

Vigan.08G028500.01

Basic Information:
Name: Vigan.08G028500.01
Multiple alignment
Variant Information
Position: Chr08:2192859..2196602 (- strand)
Length: 3744
Functional Information:
Description: Similar to glycolipid transfer protein domain-containing protein 1-like. [XP_004497102.1, Cicer arietinum]
GO: Biological Process: glycolipid transport (GO:0046836)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: glycolipid transporter activity (GO:0017089)
Molecular Function: glycolipid binding (GO:0051861)
InterPro: Glycolipid transfer protein domain (IPR014830)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.13,2.04,2.20,0.90,0.98,0.31,1.35,1.77
Arabidopsis thaliana homolog: AT4G39670.1
Automatic updates:
Name: NM_001253021 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glycolipid transfer protein domain-containing protein 1-like (LOC100813626), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253330 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative glycolipid transfer protein (LOC100818548), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:2192859..2193070 (- strand)
Length: 212
Type: three_prime_UTR
Position: Chr08:2193071..2193177 (- strand)
Length: 107
Type: CDS
Position: Chr08:2194445..2194590 (- strand)
Length: 146
Type: CDS
Position: Chr08:2194959..2195131 (- strand)
Length: 173
Type: CDS
Position: Chr08:2196160..2196369 (- strand)
Length: 210
Type: CDS
Position: Chr08:2196370..2196602 (- strand)
Length: 233
Type: five_prime_UTR

>Vigan.08G028500.01 class=Sequence position=Chr08:2192859..2196602 (- strand)
AGGAAGTTAG CAGCGGTGGA CGGTTGTCTT TCACGAGTTT GAGGGAAATG AATTGAAAGG AATCTTCTGG TAGAGCGCAT
TTGTAGCGAA TGTTCCCTCA GCGTCTAAAC ACGCGCTTTC CTTTTTACCA TTGCAAATTC GACTTCCAAT TCCTTTTTGA
CATTTGAGAC GTTCGCAAAC ACATTGAGAT TAAAGGAATC GATAAGCGAT CCAGCGATCG AAGGAAGAAT AGGATGCCCG
AGATGGACGA GGGCGAGGTT ATAGAACAAC CTCTGACGGC CATAGCAGAG GCGTTTGAGG AGCTGTCGAA GTGGATGAAG
GAGAATAGCG ACGGCCGCCA CATTCGCCTC GACAATTTCT GCGAGGTCGC CTCTCTCGTC TCCGTTCTCT TCCGTTGTCT
CGGCCTCGCT TTCAAATTCG CTGAATTGGA ATACGTCGCC AAGGTTTCTT TTCCTTTCTT TCTTTCATCA TAAATCGTAC
TTTCTTCTCT TCAAACTTCA AAACTGCCAC ATCAAATTGA CCGTTGTGGT CCTCATTCGA TAAAGTCATA TGTATTTATT
TCCATTTAAC TCTTTTTTTT AAACAAATTA CTCTAACGGA CTCTCTGTAT GAATTTCATA CAGAATTGTA TAATTTATAA
TTTTGAAGAT AATCTCGTGG AATATCAGTG TGATTTGTTT TTTTCTAATT AATAACTGGT GGTTTTTGAT TTACGGAGGA
GAGTTGGGTT TTCATGACGC GATCAATCAG GTTACGGGAT TTTTTTTTTT CCTGGAGAAT ATGTATAGTG TCGAATTGTG
TCTCTAACAA AATTTATTTG GAAGGTGGAT ATTTAGGAAA ATAAACAAAA GGAAATCTTG TAGTTTTATT TTGTTTAAAA
TGTTTTTTTT AATAATTGAA TTCCAGATGG ACGAATGAAC ACGGGATAAA TGGTGCATGT GAAAAATGAT AAAACTGAAA
GTTATGATTG CAGAATTTAG TTTTTTTTTT CTATCTCCCT TTTCCTTGAG TTACTCCTTG TGGTCAAAAT CATGTTATCT
TTGCTTTTTC CTTTAATTTT TTTATATCAT ATTGAATTTG GATTCTTTGA TATCCTCCTC CCCATCGTTC TTAATGGAGA
TGCACTCAGA AAGTCCGATA TTGTGGTGTT ATTGCAATTA ACATATAACA TTGGTGGTAG CTCCTACATT TTACTTCAGG
TTCATGTTTG GTGATCTCTT TGATACACAT TCAAGGTTTT AAATATATTA TTCCAAAAGC TTTTCTGTTC ACTGTTTTAT
GACACTTGAT CCATGCTGGT TGTGTAAAAC ATTTGGTTTC TGAGTTAATT TTCATCCAAC TAATTTCTCT CTATATTCAG
TTCATCATCT CTGCTTTACC TCCCAAAATT TTCATTTCAT CGTGTTTTCT TGCTCAATTT GAATTTCTGA CATTGTACTA
AAGTTATGAA TTACGATGTT GATATGATCA GCTAGAAGGA CTATTGGAAG CATCAAAGAC ATGTCCCACT CTACAAGATA
TTCTTGAAGT TGATGTTGGC AATGATACAG TGAAAACCTC TGGAAGCTAT TCCCGTAATC TGCGTAGAGT TCGGCAGGGT
CTTGATCTCG TCAGAGCTAT ATTCGAACAA CTTTTGTCTA CTGAGTAAGA AATCTTTTTT GTGTACAAAA ACATAAATAC
AATGCTGAAT TTTCCGTATG AAATATTGGA AAAGAAATTA TAATAGTACT TTTACACTAT GATACTTTAT ACAATCATTG
GGCACTATCT CTCACCAGCT TTTATTATTA TTTTTTAAAT ACAAAAGTTA GCTTTTTGTT AAAATCATTT TTCACCTATA
AAGACTGTCA AATGAAAAGA ACCTTTTTCC GAAAAGAAAA GATTACCGTT TTCCTGTCTG TTTAGTTTCA CCTGCGTTGA
ATCACAGCTT CATAAATTCT ATCATTTTGT TTTCTTAATG TTAGTGCCTT GTGGGTAGTT GTGGCATCTG ATTTGTAGTT
TGGCATTTTC AGAGATTCTT CTCTAAAAGA CGTGGCTTCA ACAGCTTATG GGCAGGTATG TGCACCATAC CACACATGGG
CGGTACGAAC AGCTGTGTAC GCTGGGATGT ATACACTTCC AACGAGAGAA CAACTTTTGA TGAAGCTCAA TGAAACAGGT
AATTTGCATT GTTTTATTAT GTTTCCTGGT GTGCTTATTA AGTATATATA ATCAAATATA TGATATATTT AAATAGTTAT
ATTAGTGATG GAACAGAATG GGTTGAATAT AGTCTTGTTT GTATAGATAT TGATTTATTT AAAAAATTTA AGTTGTAATA
GCTTTTTTCT TTAAGTACGG TTTGACTTTT CCAGAAACTG TCCGGTGCAT TTGTTAGAAT TTTAGTTTAA GATTAAATAT
GTTTTTCTCA TTTGGAAATA GTATTTTTCT TAAATCTTGA TTTAATTTAA TCGAATAAAT TTAGTTATTT TAACCAAATT
TTATTAAATT TACTTATGTT TTAAATACTG TTTTATGATA TATTTGAAAC ATTAAATAAA TTTAAAAAAA TTTAGTTTAA
AAAATTAAAT AAATACATTG AAAAATTAAA TTGATTTAAA ATTTTAGCAA AAATTAATTT TAATTTAAAA AAAAAACATA
TTTAACCATT TATTTTTATA ATAGTTATTT TAAAATAAGT ATATTTCTAA TTAACTTTAG AAAAACATAC ATTCACATTC
ATTTAATATA TATATATATA TATATATATA TATATATATA TATATATATA TTACAGGAGT AAAATAGTTA TAAAAAAATA
AATTTTTATC CTTAAAAAAA TAAAAGATAG TGAAGCATAA TATTAAATAA ATATAAAAAA ATTGTGCGTG TCAAATAATT
TTTTATATTT CTAAATAGGC TAATGATAGA GAGAGAGAAA ATGTAAAAAC AATAAAATCC TACTAGAATT AAAATCACTA
TTACTTAATA TCCAATTAAA TTTTTAAAAA ACATTTGGTC CGACGCAGAT AAGGTCCTAT AAGCTCATGG AGTGAGCTAA
TCTATTTCTA TTCAAGAGAA TACATTGAAA AAACTAAAAC CCTATGTATG TTGGCAGTTA TTGTTTAAAA GTTATCACTT
ACTGTTCAAA GTGTCGTTAA CCCGAACATG TTAGTCATCT TTTGAATTTT CTATCTGAAC TTTATAGACA ACTTATTACT
ATTCGCTGTA TACTTGAATT TCATTATTGG CTTACATTTT GGTGTTTAAA CAACTTACCT TTTTAGCATA TTCTATTTAA
TTCTTTTCAA ATTTATTAAA AGAATTATTT GCATAAATTC TGATGTGAGC AAAGGGTTTT TAAACAAACT TTATCCTATT
ATCAGTTAGA TAGATTTTTC TTGTTCCAGT CCATCTCACA GAGCATCATA TAAATGTTTT CGCAGAGCAA TCAGCCGAGA
AGAAGATGAA AAGGTATATT GCTGCCTCAC TTCCGATTAT AGAATACATT GATAGTCTGT ACCTTTCTCG AAATATTACG
TTGGACTGGT GAGTTTATAA AAAGAAAAGA GAAAATCTAC CAAGTTGAAT GCCCTTTCTG TTTATTAGAA GGCAGTGTCG
TGGCTCCGTT GTTGTATATA TCAGCAACCT AAGTACACAT GCTTCGTTTT TTGTACTATA TATATAAAAG ATGTAATTAT
GTTAGTTCTA CTCAACGGCT CTTGGCCCTT TAGAGATACC AAATAGATTT GTACTAAATT ACTA

>Vigan.08G028500.01
AGGAAGTTAG CAGCGGTGGA CGGTTGTCTT TCACGAGTTT GAGGGAAATG AATTGAAAGG AATCTTCTGG TAGAGCGCAT
TTGTAGCGAA TGTTCCCTCA GCGTCTAAAC ACGCGCTTTC CTTTTTACCA TTGCAAATTC GACTTCCAAT TCCTTTTTGA
CATTTGAGAC GTTCGCAAAC ACATTGAGAT TAAAGGAATC GATAAGCGAT CCAGCGATCG AAGGAAGAAT AGGATGCCCG
AGATGGACGA GGGCGAGGTT ATAGAACAAC CTCTGACGGC CATAGCAGAG GCGTTTGAGG AGCTGTCGAA GTGGATGAAG
GAGAATAGCG ACGGCCGCCA CATTCGCCTC GACAATTTCT GCGAGGTCGC CTCTCTCGTC TCCGTTCTCT TCCGTTGTCT
CGGCCTCGCT TTCAAATTCG CTGAATTGGA ATACGTCGCC AAGCTAGAAG GACTATTGGA AGCATCAAAG ACATGTCCCA
CTCTACAAGA TATTCTTGAA GTTGATGTTG GCAATGATAC AGTGAAAACC TCTGGAAGCT ATTCCCGTAA TCTGCGTAGA
GTTCGGCAGG GTCTTGATCT CGTCAGAGCT ATATTCGAAC AACTTTTGTC TACTGAAGAT TCTTCTCTAA AAGACGTGGC
TTCAACAGCT TATGGGCAGG TATGTGCACC ATACCACACA TGGGCGGTAC GAACAGCTGT GTACGCTGGG ATGTATACAC
TTCCAACGAG AGAACAACTT TTGATGAAGC TCAATGAAAC AGAGCAATCA GCCGAGAAGA AGATGAAAAG GTATATTGCT
GCCTCACTTC CGATTATAGA ATACATTGAT AGTCTGTACC TTTCTCGAAA TATTACGTTG GACTGGTGAG TTTATAAAAA
GAAAAGAGAA AATCTACCAA GTTGAATGCC CTTTCTGTTT ATTAGAAGGC AGTGTCGTGG CTCCGTTGTT GTATATATCA
GCAACCTAAG TACACATGCT TCGTTTTTTG TACTATATAT ATAAAAGATG TAATTATGTT AGTTCTACTC AACGGCTCTT
GGCCCTTTAG AGATACCAAA TAGATTTGTA CTAAATTACT A

>Vigan.08G028500.01
ATGCCCGAGA TGGACGAGGG CGAGGTTATA GAACAACCTC TGACGGCCAT AGCAGAGGCG TTTGAGGAGC TGTCGAAGTG
GATGAAGGAG AATAGCGACG GCCGCCACAT TCGCCTCGAC AATTTCTGCG AGGTCGCCTC TCTCGTCTCC GTTCTCTTCC
GTTGTCTCGG CCTCGCTTTC AAATTCGCTG AATTGGAATA CGTCGCCAAG CTAGAAGGAC TATTGGAAGC ATCAAAGACA
TGTCCCACTC TACAAGATAT TCTTGAAGTT GATGTTGGCA ATGATACAGT GAAAACCTCT GGAAGCTATT CCCGTAATCT
GCGTAGAGTT CGGCAGGGTC TTGATCTCGT CAGAGCTATA TTCGAACAAC TTTTGTCTAC TGAAGATTCT TCTCTAAAAG
ACGTGGCTTC AACAGCTTAT GGGCAGGTAT GTGCACCATA CCACACATGG GCGGTACGAA CAGCTGTGTA CGCTGGGATG
TATACACTTC CAACGAGAGA ACAACTTTTG ATGAAGCTCA ATGAAACAGA GCAATCAGCC GAGAAGAAGA TGAAAAGGTA
TATTGCTGCC TCACTTCCGA TTATAGAATA CATTGATAGT CTGTACCTTT CTCGAAATAT TACGTTGGAC TGGTGA

>Vigan.08G028500.01
MPEMDEGEVI EQPLTAIAEA FEELSKWMKE NSDGRHIRLD NFCEVASLVS VLFRCLGLAF KFAELEYVAK LEGLLEASKT
CPTLQDILEV DVGNDTVKTS GSYSRNLRRV RQGLDLVRAI FEQLLSTEDS SLKDVASTAY GQVCAPYHTW AVRTAVYAGM
YTLPTREQLL MKLNETEQSA EKKMKRYIAA SLPIIEYIDS LYLSRNITLD W*