GBrowse Details

Vigan.07G123300.01

Basic Information:
Name: Vigan.07G123300.01
Multiple alignment
Variant Information
Position: Chr07:12213914..12215686 (+ strand)
Length: 1773
Functional Information:
Description: Similar to LHCII type III chlorophyll a/b binding protein. [Q9XQB1, Vigna radiata var. radiata]
GO: Biological Process: photosynthesis, light harvesting (GO:0009765)
Cellular Component: membrane (GO:0016020)
InterPro: Chlorophyll A-B binding protein, plant (IPR001344)
Chlorophyll A-B binding protein (IPR022796)
Chlorophyll a/b binding protein domain (IPR023329)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.31,2.88,304.08,2616.87,0.91,635.19,3.61,446.56
Arabidopsis thaliana homolog: AT5G54270.1
Automatic updates:
Name: NM_001253951 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chlorophyll a-b binding protein 13, chloroplastic-like (LOC100779387), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254271 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chlorophyll a-b binding protein 13, chloroplastic-like (LOC100790960), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317299 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata chlorophyll a-b binding protein 13, chloroplastic (LOC106780309), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:12213914..12214261 (+ strand)
Length: 348
Type: five_prime_UTR
Position: Chr07:12214262..12214399 (+ strand)
Length: 138
Type: CDS
Position: Chr07:12214494..12214655 (+ strand)
Length: 162
Type: CDS
Position: Chr07:12214942..12215451 (+ strand)
Length: 510
Type: CDS
Position: Chr07:12215452..12215686 (+ strand)
Length: 235
Type: three_prime_UTR

>Vigan.07G123300.01 class=Sequence position=Chr07:12213914..12215686 (+ strand)
TATGACAGTG GTGTTAGAAG TAATATATGA TAGTGGTGTT AGAAGAAAAA GGTGGGTGTG CCGTGTTAAT TCGAACTATA
AAGCATTTTT CTTTTAAAAT AAAAAAAGGG CTAGTTGGAT AGATATAGAC AAATGATATA GAATGGAGAA AGATAAAATG
TGGATAGAAA GATATGAGTT AGAGATACAT AAAATCCTTT AAACCCTTCT CATTGGTTGC TCCAAACAAC ACCATCCCCA
CCACCAACTT CTACAATTCA TTCTAACCAC AAATTTCTCT TATTCTCTTT CCCTACATAT GATGTTCCAT TCAACCCTTC
TTCTGCAAAC CACTGGAAGT TGGAAGTGAT GGCAGCAACA TTGATGGCAG CAACAAGTGG TTCGGGCACT GTTCTTAAAC
CAAGTCCTTT CCTAGGACAA GGCAAGGCTG GAAATGGCAA CCCTCTTAGG GATGTTGTCT CAATGGGAAG TGGGAAATAC
AGCATGGTAC TATTACTCAC TCTCCTTTTT CTTTTATGAG TTATTGTTTG AGTGAGTCTG AGAATGAATG TTGTTTGGTT
TTGTGTTTGT GAACGAGAAG AGCAATCAGC TGTGGTATGG ACCAGACAGA GTGAAATACT TGGGACCCTT TTCAGCTCAA
ACACCTTCAT ACTTGAAGGG AGAATTTCCA GGTGATTATG GATGGGACAC TGCTGGCTTA TCTGCTGACC CAGAAGCATT
TGCCAAGAAC AGGGCTCTTG AGGTTACTCT TTACCATAAT CCTTCTTTCT TTCCTTCTTC AAACTCAATC ATTTTTAGGA
TCATTTTTAT TTTTATTTTG AGTAACAAGA GAGTCACATA TTTTTAAATT CATTTGATAT ATAATATAAA GCTAAAATAG
TTATAAATAA ATAATTTTTT ATATTTTTTC AAAAATAAAA AAAAAAAGTG TAAAATGAAT AAAAATTTTA TGTGTGGAAA
AATATTTTTT TTTATTTTCT TTTTCCTTTT CTCAATGATA ACAAAAAAAA TGTTTTTTGT GGAATAAGGT GATCCATGGG
CGTTGGGCCA TGCTCGGAGC CCTGGGCTGC ATCACCCCAG AGGTGCTAGA GAAGTGGTTG AGAGTGGACT TCAAGGAGCC
AGTGTGGTTC AAAGCCGGGG CCCAGATATT CTCAGAAGGT GGGCTTGACT ATTTGGGCAA CCCAAACCTT GTCCATGCCC
AAAGCATCTT GGCAGTGCTG GGCTTCCAAG TTGTACTGAT GGGCCTTGTT GAAGGGTTCC GCATCAATGG GCTAGATGGA
GTAGGAGAGG GCAACAACCT CTACCCAGGA GGCCAGTACT TTGACCCACT GGGCCTTGCT GATGACCCAA CCACTTTTGC
TGAGCTCAAA GTGAAGGAGA TCAAGAATGG AAGGCTGGCC ATGTTCTCCA TGTTTGGGTT CTTTGTTCAA GCCATTGTAA
CTGGTAAAGG CCCATTAGAG AACCTTTTGG ACCATCTTGA CAACCCAGTG GCTAACAATG CTTGGGTCTA TGCTACCAAG
TTTGCCCCTG GATCTTAATT AAATCTCCAC CCCTTATCAT CATTATTGTC ATTTATATGT AGATTATGAT CATAAATGAT
AATTGTTGGA TTAGTGAACT TTATAAGGAT TAAGCCTCAT TTTAATCACG GGATATCCCA TCTTTCTTAA GCTAATTTTG
TTTAAAGTAT TCAATGAGAA AGGTGTTTTT GTTAAGAGGG GATGCAATGT TCACGTACTC TTTTTAACAA TGATGACAAG
AGCTAAAAGG ATG

>Vigan.07G123300.01
TATGACAGTG GTGTTAGAAG TAATATATGA TAGTGGTGTT AGAAGAAAAA GGTGGGTGTG CCGTGTTAAT TCGAACTATA
AAGCATTTTT CTTTTAAAAT AAAAAAAGGG CTAGTTGGAT AGATATAGAC AAATGATATA GAATGGAGAA AGATAAAATG
TGGATAGAAA GATATGAGTT AGAGATACAT AAAATCCTTT AAACCCTTCT CATTGGTTGC TCCAAACAAC ACCATCCCCA
CCACCAACTT CTACAATTCA TTCTAACCAC AAATTTCTCT TATTCTCTTT CCCTACATAT GATGTTCCAT TCAACCCTTC
TTCTGCAAAC CACTGGAAGT TGGAAGTGAT GGCAGCAACA TTGATGGCAG CAACAAGTGG TTCGGGCACT GTTCTTAAAC
CAAGTCCTTT CCTAGGACAA GGCAAGGCTG GAAATGGCAA CCCTCTTAGG GATGTTGTCT CAATGGGAAG TGGGAAATAC
AGCATGAGCA ATCAGCTGTG GTATGGACCA GACAGAGTGA AATACTTGGG ACCCTTTTCA GCTCAAACAC CTTCATACTT
GAAGGGAGAA TTTCCAGGTG ATTATGGATG GGACACTGCT GGCTTATCTG CTGACCCAGA AGCATTTGCC AAGAACAGGG
CTCTTGAGGT GATCCATGGG CGTTGGGCCA TGCTCGGAGC CCTGGGCTGC ATCACCCCAG AGGTGCTAGA GAAGTGGTTG
AGAGTGGACT TCAAGGAGCC AGTGTGGTTC AAAGCCGGGG CCCAGATATT CTCAGAAGGT GGGCTTGACT ATTTGGGCAA
CCCAAACCTT GTCCATGCCC AAAGCATCTT GGCAGTGCTG GGCTTCCAAG TTGTACTGAT GGGCCTTGTT GAAGGGTTCC
GCATCAATGG GCTAGATGGA GTAGGAGAGG GCAACAACCT CTACCCAGGA GGCCAGTACT TTGACCCACT GGGCCTTGCT
GATGACCCAA CCACTTTTGC TGAGCTCAAA GTGAAGGAGA TCAAGAATGG AAGGCTGGCC ATGTTCTCCA TGTTTGGGTT
CTTTGTTCAA GCCATTGTAA CTGGTAAAGG CCCATTAGAG AACCTTTTGG ACCATCTTGA CAACCCAGTG GCTAACAATG
CTTGGGTCTA TGCTACCAAG TTTGCCCCTG GATCTTAATT AAATCTCCAC CCCTTATCAT CATTATTGTC ATTTATATGT
AGATTATGAT CATAAATGAT AATTGTTGGA TTAGTGAACT TTATAAGGAT TAAGCCTCAT TTTAATCACG GGATATCCCA
TCTTTCTTAA GCTAATTTTG TTTAAAGTAT TCAATGAGAA AGGTGTTTTT GTTAAGAGGG GATGCAATGT TCACGTACTC
TTTTTAACAA TGATGACAAG AGCTAAAAGG ATG

>Vigan.07G123300.01
ATGGCAGCAA CATTGATGGC AGCAACAAGT GGTTCGGGCA CTGTTCTTAA ACCAAGTCCT TTCCTAGGAC AAGGCAAGGC
TGGAAATGGC AACCCTCTTA GGGATGTTGT CTCAATGGGA AGTGGGAAAT ACAGCATGAG CAATCAGCTG TGGTATGGAC
CAGACAGAGT GAAATACTTG GGACCCTTTT CAGCTCAAAC ACCTTCATAC TTGAAGGGAG AATTTCCAGG TGATTATGGA
TGGGACACTG CTGGCTTATC TGCTGACCCA GAAGCATTTG CCAAGAACAG GGCTCTTGAG GTGATCCATG GGCGTTGGGC
CATGCTCGGA GCCCTGGGCT GCATCACCCC AGAGGTGCTA GAGAAGTGGT TGAGAGTGGA CTTCAAGGAG CCAGTGTGGT
TCAAAGCCGG GGCCCAGATA TTCTCAGAAG GTGGGCTTGA CTATTTGGGC AACCCAAACC TTGTCCATGC CCAAAGCATC
TTGGCAGTGC TGGGCTTCCA AGTTGTACTG ATGGGCCTTG TTGAAGGGTT CCGCATCAAT GGGCTAGATG GAGTAGGAGA
GGGCAACAAC CTCTACCCAG GAGGCCAGTA CTTTGACCCA CTGGGCCTTG CTGATGACCC AACCACTTTT GCTGAGCTCA
AAGTGAAGGA GATCAAGAAT GGAAGGCTGG CCATGTTCTC CATGTTTGGG TTCTTTGTTC AAGCCATTGT AACTGGTAAA
GGCCCATTAG AGAACCTTTT GGACCATCTT GACAACCCAG TGGCTAACAA TGCTTGGGTC TATGCTACCA AGTTTGCCCC
TGGATCTTAA 

>Vigan.07G123300.01
MAATLMAATS GSGTVLKPSP FLGQGKAGNG NPLRDVVSMG SGKYSMSNQL WYGPDRVKYL GPFSAQTPSY LKGEFPGDYG
WDTAGLSADP EAFAKNRALE VIHGRWAMLG ALGCITPEVL EKWLRVDFKE PVWFKAGAQI FSEGGLDYLG NPNLVHAQSI
LAVLGFQVVL MGLVEGFRIN GLDGVGEGNN LYPGGQYFDP LGLADDPTTF AELKVKEIKN GRLAMFSMFG FFVQAIVTGK
GPLENLLDHL DNPVANNAWV YATKFAPGS*