GBrowse Details

Vigan.07G114800.01

Basic Information:
Name: Vigan.07G114800.01
Multiple alignment
Variant Information
Position: Chr07:10674245..10676855 (- strand)
Length: 2611
Functional Information:
Description: Similar to 50S ribosomal protein L24, chloroplastic-like. [XP_004487627.1, Cicer arietinum]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L24 (IPR003256)
KOW (IPR005824)
Ribosomal protein L24/L26, conserved site (IPR005825)
Translation protein SH3-like domain (IPR008991)
Ribosomal protein L2 domain 2 (IPR014722)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.21,13.21,31.54,164.24,13.25,30.67,10.12,23.46
Arabidopsis thaliana homolog: AT5G54600.1
Automatic updates:
Name: NM_001248622 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500009 (LOC100500009), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251123 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306643 (LOC100306643), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:10674245..10674500 (- strand)
Length: 256
Type: three_prime_UTR
Position: Chr07:10674501..10674710 (- strand)
Length: 210
Type: CDS
Position: Chr07:10674988..10675218 (- strand)
Length: 231
Type: CDS
Position: Chr07:10675470..10675508 (- strand)
Length: 39
Type: CDS
Position: Chr07:10676658..10676765 (- strand)
Length: 108
Type: CDS
Position: Chr07:10676766..10676855 (- strand)
Length: 90
Type: five_prime_UTR

>Vigan.07G114800.01 class=Sequence position=Chr07:10674245..10676855 (- strand)
CTCACCACTG CTCTATTCTT CTCACTCTGG CATCCTTTTA TCCAAAACCA TTATTATCAG AAGCAGAAAT AACGAGAGGT
TGCAGCAACA ATGGCAGCCA TGGCTGCTCT TCAGAGCTCA ATGACTGGTC TTTCCCTCTC CTCCAACTCT TTCTTAGGCC
AGCGCTTTTC CCCCATCACA TTCCCCTCTC TTCTTCCGGT ATGCACTTTT CTCTCCACTC ATCAATGTTT TCCCAGTTTA
TTTTTTCAAT TAAAGTTTCA ATTTTGTCCA CCCCGCGTGG TTCCTTTCTC CCAATAACCA AATGGGCCTT CCTCCTTTTA
ACAATTCATG AAAATTAGCA ATTCAAGTTT TTCTCTCTTT TTTTCTTCCT TTTTAGTTTT TCATTGTAAA TATGGCGATA
TCGTTATTTG TTAGAGCATG TTCATTCATT AAAATGACTA CGTATTTTGA CATTAAGCTT CCGTTGGAAC ATAGTTGGTC
GGTACCTCTG GGAATAAATG CAAACTAAGC CCTTGTGGGT GTACATTTCT TATTGAATTT ATTTAATTGG ACTTTGATGA
CTGAAAAAAT GGATAATTAT GCTCCTGTGT TATGCTGTAT TCAAAAGTTT TGCTTCATAG ACCTCAGAGT ACTGGTGCTT
GAAAATTTGA GATGGGAATT CAAAACTGGT TTTCTATCTC AAAGCATATT CCCACTCCTT ATAGTGGAAA ACTCAGTAAT
TCCAACTGTA GGGTTCATTT GCTTGGTGCT TGTCTATGTG GTACTTTGAA GTTAAGAACT GGCTCAGCAA ACTTTTCAGT
TGAAGTGGTT TCCCTGTTAG GCTGAAGAAA CATATTCTAC AGATGAGGAT AATGTTATAA AACCTTAAAT TCGTTGTAGC
TCTTTTTAAC TTTGGATTAG GTGTTTTACA ATTGAGGATC GTTAGGAACA CACTTTACTA TTGAAACTAA TGAAAAATGA
GACCTGCCAA AATTTGTGAT TTTCAATAAA TTTTAGTCTA GAATAGACTG TTAAAAAAAG TATGTTAGAG AATATGTTGT
TAGCATTTCT CTTTAGTCTT TACAACTTTG TAAACTTGTC CACTATACTA GCTTTCACTT TTTGGCCCTA ATGAAAACAA
TTACTTATCA TCTTTTAATC AATATTTTGT GTTCCGCTTA GTCTGTATTT GGGCTCTAAT TATTTGCAAG AGTGCTCTTT
ACAAATAACA ACTGCAATAA TATTCTGTCA GACAAATGAT TGATGGTTTA TTAACGATAA AATAAATCAA GTTTGTAACT
GAATTTCATG ATTCCATCAA GAGTTTTGTA AACTGACTTG ATAATTGTTT ATCTTTGTGA TATGTAGGGT AAGTCAACCG
AGAAGCAATG TCCCATTGTA ATGAAGGTTA GTATAGATTC TTGGATTGTG CATGACCAAT GCTTATTCTT TGCAAAATCT
GTTAAGCATG TGCAGTCATT TGCAGTTCAT TATTTGTCAT ATATGAATAG TAGGTAGAAC TTACCATTGA CACTGCATCT
TACATTGAGG ATATTGAAGC TAAGCAAATC ATAAAGTTTC ACTGATATTA TATAGTGTAG CTAGCCTTAA CAATCATACT
CTTGTGTTGC ATTTTTTTTC TGCTTCTGCT CTGGCAGCTT AAACGATGGG AGCGAAAGAA GTGTAAACCA AACAGCCTTC
CTATCTTGCA AAAAATGCAT GTTAAACTTG GAGATACGGT GCAAATCATA ACTGGAAGTG AAAGAGGTAA AGTTGGGGAG
ATCACTAGAA TCTTCAAGCA TAACAGCACA GTAATAGTGA AAGATTTAAA TTTGAAGACA AAGCATGTCA AGAGTAGAGA
AGAGGGGGAA CCGGGCGAAA TTATTAAGGT TGTCCTCATT TCCCTTGCTT CACTTTACAA ATTCTTTTCC ATTTCTGAAA
CTTCTTCAAG AAATGTAAGT AACTTTTGTT TTTCACATAG AAAGTATTCA TAATTGGATA TACATTTAGT TTTACATCTC
ATTCGTAGGT TATTATAGGC ATGTTTGGAG GTAAACTAGA AGTGCTTATG ACAGTTTTTC TACTATAAAT ATAGAGCTTT
TTTTCAATAG AAAATCTGTC AAAAGCATAT AAAAAATGTT CATTGGTGTT ATTTTATAAT TCCAGATTGA AGGTCCTATC
CACAGCTCAA ATGTGATGCT GTACTCGAAA GATCAGAAGG TAGCAAGCCG TGTGGGACAC AAAGTCCTTG ATAATGGTAA
TAAAGTTCGG TACCTTATAA AGACTGGAGA AATAATTGAC AGTTCAGAAA ATTGGAAGAA ACTGAAGGAG GAGACTACTA
AGAAACCTGA AGAAGCTGCT GCTGCTGCTG CATAATTTTT CTTGTGTAGT TCATTCATTC TCTGGTAATG TAACTCTAGC
TGTACTTGTT GTGCTCAGTT TTTTTTCATT TTATCATCTG ATGTATATTT TGGTCTGTCT GTTGATCTCC ATATACAAAA
ACCAGGGTGA TTAAATTTGT CTATTGGTTG TTCACTTTGA GCAAAGTGAA TCTTTTTGAA GAGAAATTGT TCATGAAAGT
GGAAATGGCT GTTTTTTTCT GAGTATCTCT GCTTAATTCA ACCAGTTATT G

>Vigan.07G114800.01
CTCACCACTG CTCTATTCTT CTCACTCTGG CATCCTTTTA TCCAAAACCA TTATTATCAG AAGCAGAAAT AACGAGAGGT
TGCAGCAACA ATGGCAGCCA TGGCTGCTCT TCAGAGCTCA ATGACTGGTC TTTCCCTCTC CTCCAACTCT TTCTTAGGCC
AGCGCTTTTC CCCCATCACA TTCCCCTCTC TTCTTCCGGG TAAGTCAACC GAGAAGCAAT GTCCCATTGT AATGAAGCTT
AAACGATGGG AGCGAAAGAA GTGTAAACCA AACAGCCTTC CTATCTTGCA AAAAATGCAT GTTAAACTTG GAGATACGGT
GCAAATCATA ACTGGAAGTG AAAGAGGTAA AGTTGGGGAG ATCACTAGAA TCTTCAAGCA TAACAGCACA GTAATAGTGA
AAGATTTAAA TTTGAAGACA AAGCATGTCA AGAGTAGAGA AGAGGGGGAA CCGGGCGAAA TTATTAAGAT TGAAGGTCCT
ATCCACAGCT CAAATGTGAT GCTGTACTCG AAAGATCAGA AGGTAGCAAG CCGTGTGGGA CACAAAGTCC TTGATAATGG
TAATAAAGTT CGGTACCTTA TAAAGACTGG AGAAATAATT GACAGTTCAG AAAATTGGAA GAAACTGAAG GAGGAGACTA
CTAAGAAACC TGAAGAAGCT GCTGCTGCTG CTGCATAATT TTTCTTGTGT AGTTCATTCA TTCTCTGGTA ATGTAACTCT
AGCTGTACTT GTTGTGCTCA GTTTTTTTTC ATTTTATCAT CTGATGTATA TTTTGGTCTG TCTGTTGATC TCCATATACA
AAAACCAGGG TGATTAAATT TGTCTATTGG TTGTTCACTT TGAGCAAAGT GAATCTTTTT GAAGAGAAAT TGTTCATGAA
AGTGGAAATG GCTGTTTTTT TCTGAGTATC TCTGCTTAAT TCAACCAGTT ATTG

>Vigan.07G114800.01
ATGGCAGCCA TGGCTGCTCT TCAGAGCTCA ATGACTGGTC TTTCCCTCTC CTCCAACTCT TTCTTAGGCC AGCGCTTTTC
CCCCATCACA TTCCCCTCTC TTCTTCCGGG TAAGTCAACC GAGAAGCAAT GTCCCATTGT AATGAAGCTT AAACGATGGG
AGCGAAAGAA GTGTAAACCA AACAGCCTTC CTATCTTGCA AAAAATGCAT GTTAAACTTG GAGATACGGT GCAAATCATA
ACTGGAAGTG AAAGAGGTAA AGTTGGGGAG ATCACTAGAA TCTTCAAGCA TAACAGCACA GTAATAGTGA AAGATTTAAA
TTTGAAGACA AAGCATGTCA AGAGTAGAGA AGAGGGGGAA CCGGGCGAAA TTATTAAGAT TGAAGGTCCT ATCCACAGCT
CAAATGTGAT GCTGTACTCG AAAGATCAGA AGGTAGCAAG CCGTGTGGGA CACAAAGTCC TTGATAATGG TAATAAAGTT
CGGTACCTTA TAAAGACTGG AGAAATAATT GACAGTTCAG AAAATTGGAA GAAACTGAAG GAGGAGACTA CTAAGAAACC
TGAAGAAGCT GCTGCTGCTG CTGCATAA

>Vigan.07G114800.01
MAAMAALQSS MTGLSLSSNS FLGQRFSPIT FPSLLPGKST EKQCPIVMKL KRWERKKCKP NSLPILQKMH VKLGDTVQII
TGSERGKVGE ITRIFKHNST VIVKDLNLKT KHVKSREEGE PGEIIKIEGP IHSSNVMLYS KDQKVASRVG HKVLDNGNKV
RYLIKTGEII DSSENWKKLK EETTKKPEEA AAAAA*