GBrowse Details

Vigan.07G091300.01

Basic Information:
Name: Vigan.07G091300.01
Multiple alignment
Variant Information
Position: Chr07:7884902..7888314 (+ strand)
Length: 3413
Functional Information:
Description: Similar to Cytochrome b6-f complex iron-sulfur subunit. [V7BZ32, Phaseolus vulgaris]
GO: Biological Process: photosynthesis (GO:0015979)
Biological Process: oxidation-reduction process (GO:0055114)
Cellular Component: membrane (GO:0016020)
Cellular Component: thylakoid membrane (GO:0042651)
Molecular Function: ubiquinol-cytochrome-c reductase activity (GO:0008121)
Molecular Function: plastoquinol--plastocyanin reductase activity (GO:0009496)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on diphenols and related substances as donors (GO:0016679)
Molecular Function: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity (GO:0045158)
Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537)
InterPro: Rieske iron-sulphur protein, C-terminal (IPR005805)
Rieske iron-sulphur protein (IPR014349)
Cytochrome b6-f complex Fe-S subunit (IPR014909)
Rieske [2Fe-2S] iron-sulphur domain (IPR017941)
Cytochrome b6-f complex iron-sulfur subunit (IPR023960)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.32,7.40,106.28,1212.95,3.34,228.12,15.09,147.63
Arabidopsis thaliana homolog: AT4G03280.1
Automatic updates:
Name: NM_001250719 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max Rieske iron-sulphur protein precursor (PETC), mRNA.
PubMed ID: 20507538 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:7884902..7885530 (+ strand)
Length: 629
Type: five_prime_UTR
Position: Chr07:7885531..7885569 (+ strand)
Length: 39
Type: CDS
Position: Chr07:7885676..7885917 (+ strand)
Length: 242
Type: CDS
Position: Chr07:7887263..7887380 (+ strand)
Length: 118
Type: CDS
Position: Chr07:7887718..7887900 (+ strand)
Length: 183
Type: CDS
Position: Chr07:7888083..7888184 (+ strand)
Length: 102
Type: CDS
Position: Chr07:7888185..7888314 (+ strand)
Length: 130
Type: three_prime_UTR

>Vigan.07G091300.01 class=Sequence position=Chr07:7884902..7888314 (+ strand)
TCTCTGGAAC TGCCGCTATT GGCTGCATGG GTGAAATCAT AAAGCATAAG CGCCTCGTGG ATGACATGGC AGAAGAAAAC
GAGTAGATGT TTGTGAGGAA GATGACTTGT GATGTGTGGA GAGTTGTGTG TATGATGATC ATCATGGAGA GTGACGGTGA
AGAAGGTTAC AGTAGTGGGT GAAGGGTGGA GGTGAAGATG GCTTGTGATG ATTCGGTGTA GTGGCTGCAT GCACACCTTG
TCGTGGAATA AAAAAAACGG GTGCAGGAAG AAATGGCTAG CCCAGGAAGC CTAAACAAAA GAGTAAGCCC ATGTAATGGA
ATAAAAGGGG AAAGGCCTTA CTCCAAACAA GCTTAAATTC TGTAACAAAA TAAAAATCAA AGTTGGCTAT GCTGGACCAA
AACGACCAAT AAACAAGTAG CTGAAACAAA AAAGAAAAAA AAAACAATAT CGTTTGTTGT TGATTGGTTC AAGAACATGT
GGTCGTGTGG CACCTACGTG CCTTAGCGCC TTATCCAGCA ACTGTAGTGT TGACAGTTGT GGTGGTCGTT TAAGAATTTC
TAACCCGAAA TCTTCACTTT ACATCTCTCT ATCTCTCAAT CTTCATCACC AACAAGTGTT TGAGTAACCA TGGCATCCAC
CACTCTATCT CCTACAACCC CTTCTCAGGT ATCAAAAACA ACAAAAATGT TCATTTTTAA CATATTCTCT ATAATGTGCA
GCATTATCAC GGTGCTTTTG AGTTAACAAG GGACTACATG CGTTGTGATT TCAGCTATGC TCCGGAAAGA GTGGGATTTT
CTGTCCCTCA CAGGCACTTC TTGTGAAACC AATGAAGAGG CAGATGATGG GGAAGAGCAA GGGAATGAAA ATTGCTTGCC
AGGCCACCAG CATTCCTGCT GATAGAGTCC CTGACATGGG CAAAAGGCAG CTCCTGAATC TCCTTCTTCT TGGTGCTATT
TCACTCCCAA GTGCTGGAAT GCTTATTCCC TACACCTATT TCTTCGTTCC TCCAGGGTAG GTTTTCTTTT CATCACCCTC
TCCCTTCTTC TTCTTCTTCT TCTTCTTCTT AAACTTGCAA CTCAACCCTC TTTCTGTTCT GTAAGTGTTA AATGAATTCA
CTTTTTATTT TGGGGGAGGT GGCAATTAGC ATTATTGATC CTATATGACT ATTGACTTGT TCAATTGCGT GTGAATTTAA
TCATGTAGGT TTAGGATCTC TGTTCTTGTT TTTTAACTTA ACTGTTGCAG TTCTATGGCG TGCCTTTGAT TTGTCATCAA
CAATTATATT TGGGAGTTAC ATCTTTTTTG GGTCTTATGA AATTTCAGAT TTCTGGTTTT AGTCCTTGTG AAATTTCAGA
TTCCTGGTTG TTGTCCTTGT AAAATGGGCA GAAATTTTCA CCTTCAAGAC TTGTATTGAT GACGAGAAGA GACTAAAACC
GTAAATTTGA AAATTCATAA GAATCAAAAA CATATTTGCC TTTGCATGTG CTTTTTTCAT AAAGTTGTTG TCGAATTAGT
CCTTAATAAA AGATGCAAAA TCTCATTGAC TTAATCCTTG GACGATTTTT ACTGAACTAG CCCTTCAATT TCATTGCTCT
TATCACTCTA ATATTCCTTA AGGATGAATA TGGTAACATT TGAGATTTTG TAAGTGACAA ATTTTGTGAC AAGTTTTTTG
AAAACTAACA TGGTAACATT TTAAACCATT AAGGAACTAA TTTAGTAACC AAAATTAAAG GACTAATGTG GTGTCTTGTG
TAACTTTTGC AGAAATAAGT TGAGAGTTTA CTCTAGTAAT AATATGAATT CTCAAAAAGA TAGTTTCTCT TATACTAATT
GGATCAGCTT TGGGGATTCT TTTGTGTGAT GATACATCCA TGAGAAGCTT TTCTGTCAAA CCTTGAATAA TTAGCTTCTG
CTTTGCTAGA TGTTCACCCT CTTCTTCAAT ACTGTTACTT CAACCTAATT CCTACATCGT TATAGTGGTG TGATTATAGT
GTAATGATTT CTGTAGTGGG AGGGTACGAG GGAAGTTAAA AATGTGCACA TTCCTAACAT TGGGGGAGAA GTACTGAATT
CATAATTTCT TACTGTTTGG AATTTTGCCT CAGTTATTTA GTTTTGCATT CTTTTCACAT GAGTTTAAAA TTTCTGCACC
TAAGTTCCCA GTTGATTCAT AAGGGAGTAT ATTAAGTTGC TGAGAAGGGG AAGAAATCTA TCATAATGTT AATTACTTAT
TGCATCCAGC ATCTAACAGT TTGATAATTA ACTCTTAACC TTCCAATACG GTTGTTTCCA TTATTCAATC CAGTTTCTTC
ATCTATACGT ACCATTAACC CCAACATGCA AAAAATTACA GTTCAGGTTC TTCAGCTGGA GGTACTGTGG CCAAGGATGC
CGTTGGAAAT GATGTAATCG CAGAGAATTG GCTCAAGACA CATGGACCTG GTGACAGAAC TCTTACACAA GGATTGAAGG
TATGTTTACA GCTGTTTAGT GTTAGTGTTT TCATAGATCT TCAACAACTT GCAGATGTTT TACATTTAAC ATTGAAAGCA
ATAATTTCCC TGGACTGCTT CAGTGCCATT TCTCAATCCT TCTTTAGACC TCTTTTCTTT CCTCAACAAA TTTTTATCTT
GCTACATTAT GCCACTTCTA TCCAGTGACA GTGAAAGGGA AATTTAAACT CTAGATCTAA CTACATAAAC CAAAGGTTTG
CCCTTGTAGA AGTGAAAATG ATTGCCTTCT TACTTTCCAA CCAAAATAAG TATTTTCACA TTTCCATAAT TTGAATCCTA
CCCCTTTTAT TAACAGGGAG ATCCTACCTA TCTTGTGGTG GAGAAAGACA GAACCCTTGC AACATACGCA ATTAACGCGG
TGTGCACTCA TCTCGGATGT GTGGTGCCAT GGAATACAGC TGAGAAAAAG TTCATTTGCC CCTGTCATGG ATCTCAGTAC
AATGACCAAG GAAGAGTTGT GAGAGGGCCT GCTCCCTTGG TAAGTAAATT GGAAAACCAT CTTTTGAGAA ATTTGTGGCC
TTTTTACTTA TAGAAGGATA GGTTCAAGAC ATAGTAATGG TTATTTTCTT AACAACTAGT GTTCAAATTT TAATCTTTTC
TTTTCTCTAC ATACCTGCGG CTAGAACAGT GATGAATAAT TTTGTTGTTC TTGTTGGACA GTCTCTGGCA TTAGCACATT
GTGATATAGA TGATGGGAAG GTGGTGTTTG TTCCTTGGGT TGAAACAGAT TTCAGAACAG GTGATGCTCC ATGGTGGGCT
TAGACTCCTT AAAGCCGTTT CTCTGTTGTC CTATGTATTT AAGTGTGAAA TTCAAACAAT CTGTTTTGTG TCACTGCATA
AATATATTTT GTAATCAAAT TCATATTCTG TGAACTCAAG CTATGGAAAG GCA

>Vigan.07G091300.01
TCTCTGGAAC TGCCGCTATT GGCTGCATGG GTGAAATCAT AAAGCATAAG CGCCTCGTGG ATGACATGGC AGAAGAAAAC
GAGTAGATGT TTGTGAGGAA GATGACTTGT GATGTGTGGA GAGTTGTGTG TATGATGATC ATCATGGAGA GTGACGGTGA
AGAAGGTTAC AGTAGTGGGT GAAGGGTGGA GGTGAAGATG GCTTGTGATG ATTCGGTGTA GTGGCTGCAT GCACACCTTG
TCGTGGAATA AAAAAAACGG GTGCAGGAAG AAATGGCTAG CCCAGGAAGC CTAAACAAAA GAGTAAGCCC ATGTAATGGA
ATAAAAGGGG AAAGGCCTTA CTCCAAACAA GCTTAAATTC TGTAACAAAA TAAAAATCAA AGTTGGCTAT GCTGGACCAA
AACGACCAAT AAACAAGTAG CTGAAACAAA AAAGAAAAAA AAAACAATAT CGTTTGTTGT TGATTGGTTC AAGAACATGT
GGTCGTGTGG CACCTACGTG CCTTAGCGCC TTATCCAGCA ACTGTAGTGT TGACAGTTGT GGTGGTCGTT TAAGAATTTC
TAACCCGAAA TCTTCACTTT ACATCTCTCT ATCTCTCAAT CTTCATCACC AACAAGTGTT TGAGTAACCA TGGCATCCAC
CACTCTATCT CCTACAACCC CTTCTCAGCT ATGCTCCGGA AAGAGTGGGA TTTTCTGTCC CTCACAGGCA CTTCTTGTGA
AACCAATGAA GAGGCAGATG ATGGGGAAGA GCAAGGGAAT GAAAATTGCT TGCCAGGCCA CCAGCATTCC TGCTGATAGA
GTCCCTGACA TGGGCAAAAG GCAGCTCCTG AATCTCCTTC TTCTTGGTGC TATTTCACTC CCAAGTGCTG GAATGCTTAT
TCCCTACACC TATTTCTTCG TTCCTCCAGG TTCAGGTTCT TCAGCTGGAG GTACTGTGGC CAAGGATGCC GTTGGAAATG
ATGTAATCGC AGAGAATTGG CTCAAGACAC ATGGACCTGG TGACAGAACT CTTACACAAG GATTGAAGGG AGATCCTACC
TATCTTGTGG TGGAGAAAGA CAGAACCCTT GCAACATACG CAATTAACGC GGTGTGCACT CATCTCGGAT GTGTGGTGCC
ATGGAATACA GCTGAGAAAA AGTTCATTTG CCCCTGTCAT GGATCTCAGT ACAATGACCA AGGAAGAGTT GTGAGAGGGC
CTGCTCCCTT GTCTCTGGCA TTAGCACATT GTGATATAGA TGATGGGAAG GTGGTGTTTG TTCCTTGGGT TGAAACAGAT
TTCAGAACAG GTGATGCTCC ATGGTGGGCT TAGACTCCTT AAAGCCGTTT CTCTGTTGTC CTATGTATTT AAGTGTGAAA
TTCAAACAAT CTGTTTTGTG TCACTGCATA AATATATTTT GTAATCAAAT TCATATTCTG TGAACTCAAG CTATGGAAAG
GCA

>Vigan.07G091300.01
ATGGCATCCA CCACTCTATC TCCTACAACC CCTTCTCAGC TATGCTCCGG AAAGAGTGGG ATTTTCTGTC CCTCACAGGC
ACTTCTTGTG AAACCAATGA AGAGGCAGAT GATGGGGAAG AGCAAGGGAA TGAAAATTGC TTGCCAGGCC ACCAGCATTC
CTGCTGATAG AGTCCCTGAC ATGGGCAAAA GGCAGCTCCT GAATCTCCTT CTTCTTGGTG CTATTTCACT CCCAAGTGCT
GGAATGCTTA TTCCCTACAC CTATTTCTTC GTTCCTCCAG GTTCAGGTTC TTCAGCTGGA GGTACTGTGG CCAAGGATGC
CGTTGGAAAT GATGTAATCG CAGAGAATTG GCTCAAGACA CATGGACCTG GTGACAGAAC TCTTACACAA GGATTGAAGG
GAGATCCTAC CTATCTTGTG GTGGAGAAAG ACAGAACCCT TGCAACATAC GCAATTAACG CGGTGTGCAC TCATCTCGGA
TGTGTGGTGC CATGGAATAC AGCTGAGAAA AAGTTCATTT GCCCCTGTCA TGGATCTCAG TACAATGACC AAGGAAGAGT
TGTGAGAGGG CCTGCTCCCT TGTCTCTGGC ATTAGCACAT TGTGATATAG ATGATGGGAA GGTGGTGTTT GTTCCTTGGG
TTGAAACAGA TTTCAGAACA GGTGATGCTC CATGGTGGGC TTAG

>Vigan.07G091300.01
MASTTLSPTT PSQLCSGKSG IFCPSQALLV KPMKRQMMGK SKGMKIACQA TSIPADRVPD MGKRQLLNLL LLGAISLPSA
GMLIPYTYFF VPPGSGSSAG GTVAKDAVGN DVIAENWLKT HGPGDRTLTQ GLKGDPTYLV VEKDRTLATY AINAVCTHLG
CVVPWNTAEK KFICPCHGSQ YNDQGRVVRG PAPLSLALAH CDIDDGKVVF VPWVETDFRT GDAPWWA*