Variant information

Chr07:7884902 - 7888314

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
7885058GT461785.771.00START_GAINED(|||None|Vigan.07G091300.01), UTR_5_PRIME(|473||None|Vigan.07G091300.01)Vigna nepalensis
7885121AG341282.771.00UTR_5_PRIME(|410||None|Vigan.07G091300.01)Vigna nepalensis
7885242CT461657.771.00UTR_5_PRIME(|289||None|Vigan.07G091300.01)Vigna nepalensis
7885311TC321350.771.00UTR_5_PRIME(|220||None|Vigan.07G091300.01)Vigna nepalensis
7885352CT21869.771.00START_GAINED(|||None|Vigan.07G091300.01), UTR_5_PRIME(|179||None|Vigan.07G091300.01)Vigna nepalensis
7886502TG481971.771.00INTRON(|||None|Vigan.07G091300.01), UPSTREAM(|4816||None|Vigan.07G091400.01)Vigna nepalensis
7886655TC582315.771.00INTRON(|||None|Vigan.07G091300.01), UPSTREAM(|4663||None|Vigan.07G091400.01)Vigna nepalensis
7886759TC512031.771.00INTRON(|||None|Vigan.07G091300.01), UPSTREAM(|4559||None|Vigan.07G091400.01)Vigna nepalensis
7887652TC411623.771.00INTRON(|||None|Vigan.07G091300.01), UPSTREAM(|3666||None|Vigan.07G091400.01)Vigna nepalensis
7887888GA311177.771.00SYNONYMOUS_CODING(SILENT|ggG/ggA|G190|None|Vigan.07G091300.01), UPSTREAM(|3430||None|Vigan.07G091400.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
7885279CAC351208.731.00UTR_5_PRIME(|251||None|Vigan.07G091300.01)Vigna nepalensis
7885334AGA291354.731.00UTR_5_PRIME(|196||None|Vigan.07G091300.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
7885944(CTT)9(CTT)10401832.731.00INTRON(|||None|Vigan.07G091300.01)Vigna nepalensis