GBrowse Details

Vigan.07G036500.01

Basic Information:
Name: Vigan.07G036500.01
Multiple alignment
Variant Information
Position: Chr07:2561279..2565690 (- strand)
Length: 4412
Functional Information:
Description: Similar to Uncharacterized protein. [V7ATE3, Phaseolus vulgaris]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: histone binding (GO:0042393)
InterPro: Zinc finger, PHD-type (IPR001965)
Zinc finger, FYVE/PHD-type (IPR011011)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, PHD-type, conserved site (IPR019786)
Zinc finger, PHD-finger (IPR019787)
Alfin (IPR021998)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:17.45,18.69,14.35,30.43,9.60,23.30,17.60,14.35
Automatic updates:
Name: NM_001250922 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PHD3 (LOC100170696), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001348659 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PHD finger superfamily protein (LOC100777146), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:2561279..2561610 (- strand)
Length: 332
Type: three_prime_UTR
Position: Chr07:2561611..2561877 (- strand)
Length: 267
Type: CDS
Position: Chr07:2562967..2563105 (- strand)
Length: 139
Type: CDS
Position: Chr07:2563760..2563988 (- strand)
Length: 229
Type: CDS
Position: Chr07:2564807..2564839 (- strand)
Length: 33
Type: CDS
Position: Chr07:2565341..2565425 (- strand)
Length: 85
Type: CDS
Position: Chr07:2565426..2565690 (- strand)
Length: 265
Type: five_prime_UTR

>Vigan.07G036500.01 class=Sequence position=Chr07:2561279..2565690 (- strand)
CGACGATCGA TATGCGTGGA AGCAGTGAGG TTGTAACTTA ATTAAGGTGG ATGCGAGCAC AGAGAATTGA AGGAGGAGGA
TTCATTGTTC ATCATGCAAA TGAAATAAAT TTCACTACAC TATACTCAAA CGCAGCACAT ACCATAATAC CCTGCGATTG
CGTTTTTCCT ATTCTCTCTT CTCTCTCTGA ATTTTGTTGT GAACAAAGTT GCGTGTGTGC AGTGTGGTGA GACCCTAAAC
GACCTCGTTT TCACGTTCTC TGAGAATGGA AGCGCGAAGT CGCTCCGTGG AAGACATATT CGAGGATTTC AAGGGCCGAC
GAGCAGGCAT CATCAAAGCC CTCACCACCG GTAACGTAAC TAATGTGCTT TTCAATTTTA AATTCCATGC ACCGTTAAAT
TACTTATCTA CCACTGTTTT TCGGAAATAC CTATTCCTTT TTTTTCATGA TTGGTTAATG AGTTATGGAA CCAGAAAAAT
AATAATAATA ATCATAATTC ACGAATCACG GCAGGGGATT GTTCACTGAT CTACTGTAGC GGTTTATTTA TTTTTTTCAT
TTTCGGTTGT GAATGACATG TTAACCTGCG ACCAGTTACT GTTCCGTTAC GACATTCAGT TTGTTGTGGT TTAGACGGAA
ACCGAACGTG AGACCTGTTT CTTGTATTGA ATGAATTGAA TCCTTTCTTT CGCATTTCTA TACCTTCAGG GAATTTCAGT
TTGATGAGTC GCACGTGACG GATTTTGATC TTTTTTTTTG TTTTTTAATT TTATGTTTCA ATGTATGAAG GATTTTGATT
TTTTTTTCCT CATACTTGTT TAATATTTCT GGCCTGTTTG TGCTGTTGCA GATGTTGAAG ATTTCTACAG TCAATGTGAT
CCTGGTAAAC CCTGATTTTA GGTTTGAATT GTTTTTCTAG CGGTTTGCAG TTACTGGCTC TTGAATTTTC CTGATGCTAT
TGCTTTTCTA GTACATGTAC TGAAATTAGC TCGATATTCG AGCATGACTG TTTTTCTTGG TCTAGTGTTT GATTTTCACC
GTACCCATCT TGAGGCTCTT GCTATAAAGG GAAGTCAATT CAATATGGGT AGCTTTTATT TTTGTGGTGA CTTGGTCATG
TATTTATTTC AATTGATGAT GACAATTTAT TGTTCTCTAT CATCTGACTG TAAGCTTCGA ACGCCTATTT TTTTTTTTTT
TTTGAACTGC CTTCTTTGTA ATCATTAGCT AATGTAGCTG TAAATTATAT TGCGGTACTC ATTTCCTTCT ATGATTAAAA
TATATTGCAT AGACTTTGGA TATATGATAG ACACTTGTGG AATGACAGTA GGTCACTAGG TTTGGTATGG TTCGGGCTTT
CCCCATACGG TTTGTGATTG GTTACGACCT TACAAAGTTA CATAGTTGTG GGGAATGTAC TATTTTGTAA TCCCAAGTAT
CATTCTCCCC TAGAGATATT ATTGTATTAT TACCCTAGCT GCAGAGCTAG GATGACATGA AATGCTTGAT ACTTCTTAAA
AACCTCTTGG CAGTAAATTT TTTTCGGGAG TAAAGATGTT ATGGAGTTAT TCTAGCTTCA AATAAAAGTA TGCTGTAAAG
GTAGAATTAC CAGTCGTTTT ATCCATATGA AATGTCTTTC CTTTGTTGCT AGTTTATCTG TGTATGAATT TGTTTTTATA
TCCTTTATTT TTATTCTTTC AGAGAAGGAG AATCTGTGCT TATATGGATT ACCCAGTGAG CAGTGGGAAG TAAATTTACC
TGTAGAAGAA GTTCCTCCAG AGCTTCCTGA GCCTGTCCTG GGCATTAACT TTGCTAGGGA TGGCATGCAG GAAAAAGACT
GGCTATCTTT AGTTGCTGTT CATAGTGATA CATGGTTGCT TGCCCTTGCC TTTTATTTTG GAGCCAGATT TGGATTTGAT
AAAACTGACA GGTATATCTT ACTCGGAGCA TATCTCATAT CTCATGTCAA CTTGTAAAGG ATTTGGTTCG ACATGACCTT
GAAAATAAGG GAACTAAGGA AGCAATTTAG GTCAACCTTT TTTTATTTAT CTTGGTTCAG TCAAGTTCCT GTGGAATTTT
TTAACTTATG TTTTTTCTTT CACCACCCTC CTTGCTGACT ACAAGTTTAC CTCTTGTTTA GTATGAACAT TTTTCTCCTT
TTGATAGTTA TTTGGCTGCA TCACTGTTTT TATCTCAGTT TATTTATAAT TTTGTTGCTG ACTAATTATT GTAGAAGCAG
TTGCCCACCA TGGACAAGGG CAAAGATGTT GAAGAATATA ATAACACATT TTGCCTTTTT CTTTGAGAAA AACATGTTGA
AGAGGAAGAG AGAGAGAAAA AGGAATAACA GTGTTGTGAC TACTGTTTAC TGACTTAAGA TGATGCAAGG AGAAAAAGTA
GGAGCAGAGC TTTTATATTA GTTTCATGTG AATGGAATAT CCGTAGTGGG CTTCCTATCT GACACCTAAA TGAATGTTCT
TTCTGTCATC GCTTAGTAGG CTGTGTATTT GCTCTTGATA GTTGGTAATC TGAATATGTT TCCTCCATGC ATCGATGTAC
TCATGATTTG GCATTTGTTA TGTAGGAAAC GACTATTCAG TATGATCAAT GAACTACCAA CAATATTTGA AGTTGTTACT
GGTGGTGGAG CAAAGAAGCC AGTTAAAGAG AAGTCTTCAG TTTCGAACAA CAATGGAAAC AAATCTAAGT CTAACTCTAA
AGTGGTAAAC AATATTTTTC TCCTCAAATC TAGACATGAC ATGTAAAGTA GTTGTCTGGA ACTCTTCTTT TTTTCCCACA
AGTAGTGTCA ATGTTTTGAT CTCAGGTCTT TTAAGATAAC TTTGCTAAAG TTGATAACCT TTCAAGATAC TGTGTTTTGA
AGCTCAGTGT TTCTATGAAG TCTGCCTTAA AAAATGTCTC GTCAATTAAG AGAGGAAGGT GTTTATAAAT TTTACTGTTG
ACATTGATTC TTAAGTGCGA TGTGAGACTT TTGGATGCAC ATTTTGTTTT CAAATGGAAA TAATAGAGAA TTGGTTTGAC
ATGGTCCATG TGCTAAGATG AAAATTGATA TTGAGACCTA GAAATCAAAA CATTAGGATA AACTTCAAAA AAGCTCGAAA
TAAGGGTTGT TACAGCTTAC ATTTCAGTTC CTTGCCTTAG GCATTTCAAG GTGGAAACGT TTCGTATTAA CTGTGATGAT
TTAAACTGGC TGGCACTGAA TTGGAAAAGA AAAAAAGGAA GAATAGAAAA GCAAGTTAGT TTAATTGATT GCTTTGAGTG
AAAAGGAGAC AATTGTTTAG ATGAAGAAGT AAAAGAGTTC TTCCTCATTC TAGACCCTGT CACCCAAAAC AGTATAACTT
CTCATAATCT TCCATTCAAT AACTAGCTGT TTTAAAAGAC TGAGGTGTTA CAATTTGTTA AGAAATTTAT CCTTAGCTTT
GCATATTTTG TATTAGTTTT GACCTCACAT TCGAATGAAC AATGGAGTAG GATAAATACT TCAGAGAGAT GGTGAGATAA
AAAGATCATG AGGGATCCTA ATATGTTATA TCATGGTTTT CCGTTGTTAT CTTTTTAATT CAGTGTATAA GAGCATTAGA
ATGTGGACAT TTATTGATAG CGGCATCTCA TGTTCTTAGA GTGCATCAAT GACTGTTAAT GGAGCATTCA CTGGGTTCTG
TATAGATGTT CGTGCAAATG TATGTGGGAG GAGTTTGAGA ATAGCTGACT TGTATGGCTA GTGTCATCTA GTCTGTGGTT
CTCCTTTACT CAGATAATTT GTGTTCTTAT GTAATTGTTG GCTGGTGGAG CAGCGGGTTC CCGAAACCCA GGGCAGACAG
TCAAAGGCCT TGTTACAACC AAAAGATGAG GATGAAGGAC TAGAAGAGCA AGATGAAGAT GAACATGGAG AGACCTTGTG
TGGGGCATGT GGTGAGAATT ATGGCACTGA TGAGTTCTGG ATTTGCTGTG ACATCTGCGA GAAGTGGTTC CATGGCAAAT
GCGTGAAGAT AACCCCTGCT AGGGCAGAGC ACATCAAGCA ATACAAGTGT CCATCGTGCA GTAACAAGAG AGCTCGCTAA
TCAAGTTTCC GTTATGGACA AACTTTGTTC GAGCCTTTAC TAATCTGGTT AATATGTGTT TCTTTCTAGA TGTAGTTGAT
GGATAGTTTT TCTGTTTGAC ACACATGTAG ATTTTTTGTC TTTTGTGATT GTCTTGGGAA AGTTGTCTTT TCCTAAGCCT
TGCCCTAGCT ATGGATTCAC GTTGGCATAA GCTTCATATG AATGGGGTTG AAACCTTAAT CTCCTGGCCA CCTTAAATAT
TAAGGAAATT GAAGTGCTAC AACATTTGCA CCAAATGAAT GGATGGCATT TGAACATGTT AATTTTCAGT TCTTTCGATT
GTCTGAGGGG AA

>Vigan.07G036500.01
CGACGATCGA TATGCGTGGA AGCAGTGAGG TTGTAACTTA ATTAAGGTGG ATGCGAGCAC AGAGAATTGA AGGAGGAGGA
TTCATTGTTC ATCATGCAAA TGAAATAAAT TTCACTACAC TATACTCAAA CGCAGCACAT ACCATAATAC CCTGCGATTG
CGTTTTTCCT ATTCTCTCTT CTCTCTCTGA ATTTTGTTGT GAACAAAGTT GCGTGTGTGC AGTGTGGTGA GACCCTAAAC
GACCTCGTTT TCACGTTCTC TGAGAATGGA AGCGCGAAGT CGCTCCGTGG AAGACATATT CGAGGATTTC AAGGGCCGAC
GAGCAGGCAT CATCAAAGCC CTCACCACCG ATGTTGAAGA TTTCTACAGT CAATGTGATC CTGAGAAGGA GAATCTGTGC
TTATATGGAT TACCCAGTGA GCAGTGGGAA GTAAATTTAC CTGTAGAAGA AGTTCCTCCA GAGCTTCCTG AGCCTGTCCT
GGGCATTAAC TTTGCTAGGG ATGGCATGCA GGAAAAAGAC TGGCTATCTT TAGTTGCTGT TCATAGTGAT ACATGGTTGC
TTGCCCTTGC CTTTTATTTT GGAGCCAGAT TTGGATTTGA TAAAACTGAC AGGAAACGAC TATTCAGTAT GATCAATGAA
CTACCAACAA TATTTGAAGT TGTTACTGGT GGTGGAGCAA AGAAGCCAGT TAAAGAGAAG TCTTCAGTTT CGAACAACAA
TGGAAACAAA TCTAAGTCTA ACTCTAAAGT GCGGGTTCCC GAAACCCAGG GCAGACAGTC AAAGGCCTTG TTACAACCAA
AAGATGAGGA TGAAGGACTA GAAGAGCAAG ATGAAGATGA ACATGGAGAG ACCTTGTGTG GGGCATGTGG TGAGAATTAT
GGCACTGATG AGTTCTGGAT TTGCTGTGAC ATCTGCGAGA AGTGGTTCCA TGGCAAATGC GTGAAGATAA CCCCTGCTAG
GGCAGAGCAC ATCAAGCAAT ACAAGTGTCC ATCGTGCAGT AACAAGAGAG CTCGCTAATC AAGTTTCCGT TATGGACAAA
CTTTGTTCGA GCCTTTACTA ATCTGGTTAA TATGTGTTTC TTTCTAGATG TAGTTGATGG ATAGTTTTTC TGTTTGACAC
ACATGTAGAT TTTTTGTCTT TTGTGATTGT CTTGGGAAAG TTGTCTTTTC CTAAGCCTTG CCCTAGCTAT GGATTCACGT
TGGCATAAGC TTCATATGAA TGGGGTTGAA ACCTTAATCT CCTGGCCACC TTAAATATTA AGGAAATTGA AGTGCTACAA
CATTTGCACC AAATGAATGG ATGGCATTTG AACATGTTAA TTTTCAGTTC TTTCGATTGT CTGAGGGGAA 

>Vigan.07G036500.01
ATGGAAGCGC GAAGTCGCTC CGTGGAAGAC ATATTCGAGG ATTTCAAGGG CCGACGAGCA GGCATCATCA AAGCCCTCAC
CACCGATGTT GAAGATTTCT ACAGTCAATG TGATCCTGAG AAGGAGAATC TGTGCTTATA TGGATTACCC AGTGAGCAGT
GGGAAGTAAA TTTACCTGTA GAAGAAGTTC CTCCAGAGCT TCCTGAGCCT GTCCTGGGCA TTAACTTTGC TAGGGATGGC
ATGCAGGAAA AAGACTGGCT ATCTTTAGTT GCTGTTCATA GTGATACATG GTTGCTTGCC CTTGCCTTTT ATTTTGGAGC
CAGATTTGGA TTTGATAAAA CTGACAGGAA ACGACTATTC AGTATGATCA ATGAACTACC AACAATATTT GAAGTTGTTA
CTGGTGGTGG AGCAAAGAAG CCAGTTAAAG AGAAGTCTTC AGTTTCGAAC AACAATGGAA ACAAATCTAA GTCTAACTCT
AAAGTGCGGG TTCCCGAAAC CCAGGGCAGA CAGTCAAAGG CCTTGTTACA ACCAAAAGAT GAGGATGAAG GACTAGAAGA
GCAAGATGAA GATGAACATG GAGAGACCTT GTGTGGGGCA TGTGGTGAGA ATTATGGCAC TGATGAGTTC TGGATTTGCT
GTGACATCTG CGAGAAGTGG TTCCATGGCA AATGCGTGAA GATAACCCCT GCTAGGGCAG AGCACATCAA GCAATACAAG
TGTCCATCGT GCAGTAACAA GAGAGCTCGC TAA

>Vigan.07G036500.01
MEARSRSVED IFEDFKGRRA GIIKALTTDV EDFYSQCDPE KENLCLYGLP SEQWEVNLPV EEVPPELPEP VLGINFARDG
MQEKDWLSLV AVHSDTWLLA LAFYFGARFG FDKTDRKRLF SMINELPTIF EVVTGGGAKK PVKEKSSVSN NNGNKSKSNS
KVRVPETQGR QSKALLQPKD EDEGLEEQDE DEHGETLCGA CGENYGTDEF WICCDICEKW FHGKCVKITP ARAEHIKQYK
CPSCSNKRAR *